One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m21/peak-motifs_dyads_m21_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m21_shift2 ; 22 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m21_shift2 (dyads_m21dyads_m21)     
; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=14; shift=2; ncol=18; --ssAGCAGCTGCTss--
; Alignment reference
a	0	0	11	7	45	6	0	50	0	0	2	1	1	3	7	11	0	0
c	0	0	14	24	1	1	51	0	3	49	0	0	44	3	14	16	0	0
g	0	0	16	14	3	44	0	0	49	3	0	51	1	1	24	14	0	0
t	0	0	11	7	3	1	1	2	0	0	50	0	6	45	7	11	0	0
MA0832.1_rc_shift2 (Tcf21_rc) 
; dyads_m21 versus MA0832.1_rc (Tcf21_rc); m=1/21; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.781897; --ryAACAGCTGTTry--
; cor=; Ncor=
a	0	0	60.0	19.0	171.0	171.0	0.0	171.0	1.0	2.0	0.0	0.0	0.0	3.0	46.0	17.0	0	0
c	0	0	32.0	80.0	0.0	20.0	171.0	0.0	1.0	171.0	0.0	0.0	0.0	23.0	22.0	70.0	0	0
g	0	0	49.0	23.0	23.0	4.0	0.0	0.0	171.0	0.0	1.0	171.0	10.0	1.0	76.0	29.0	0	0
t	0	0	30.0	50.0	5.0	0.0	0.0	0.0	0.0	0.0	171.0	0.0	171.0	171.0	28.0	55.0	0	0
MA0500.2_rc_shift3 (MYOG_rc) 
; dyads_m21 versus MA0500.2_rc (MYOG_rc); m=2/21; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.776399; ---sarCAGCTGyts---
; cor=; Ncor=
a	0	0	0	5310.0	8475.0	7192.0	88.0	21777.0	95.0	169.0	163.0	182.0	1678.0	4692.0	5070.0	0	0	0
c	0	0	0	6369.0	3718.0	2706.0	21985.0	179.0	131.0	21963.0	236.0	101.0	10790.0	5483.0	5596.0	0	0	0
g	0	0	0	5660.0	5497.0	10792.0	102.0	238.0	21964.0	130.0	176.0	21988.0	2730.0	3754.0	6381.0	0	0	0
t	0	0	0	5018.0	4667.0	1667.0	182.0	163.0	167.0	95.0	21782.0	86.0	7159.0	8428.0	5310.0	0	0	0
MA1631.1_rc_shift2 (ASCL1(var.2)_rc) 
; dyads_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/21; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.704272; --gsrGCAGGTGchg---
; cor=; Ncor=
a	0	0	8032.0	7779.0	9017.0	2394.0	249.0	32756.0	151.0	815.0	618.0	289.0	3290.0	8805.0	7347.0	0	0	0
c	0	0	8356.0	8939.0	2966.0	2719.0	33411.0	492.0	607.0	3209.0	860.0	321.0	18576.0	8601.0	8371.0	0	0	0
g	0	0	11996.0	10555.0	17883.0	28844.0	445.0	740.0	33402.0	30169.0	563.0	33562.0	6654.0	7998.0	11805.0	0	0	0
t	0	0	5972.0	7083.0	4490.0	399.0	251.0	368.0	196.0	163.0	32315.0	184.0	5836.0	8952.0	6833.0	0	0	0
MA0816.1_rc_shift4 (Ascl2_rc) 
; dyads_m21 versus MA0816.1_rc (Ascl2_rc); m=4/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.685691; ----rrCAGCTGyt----
; cor=; Ncor=
a	0	0	0	0	199.0	94.0	2.0	300.0	1.0	18.0	15.0	1.0	1.0	16.0	0	0	0	0
c	0	0	0	0	28.0	15.0	300.0	0.0	2.0	300.0	0.0	0.0	172.0	63.0	0	0	0	0
g	0	0	0	0	101.0	206.0	1.0	0.0	300.0	23.0	0.0	300.0	41.0	36.0	0	0	0	0
t	0	0	0	0	34.0	6.0	0.0	4.0	3.0	7.0	300.0	3.0	128.0	237.0	0	0	0	0
MA0830.2_rc_shift2 (TCF4_rc) 
; dyads_m21 versus MA0830.2_rc (TCF4_rc); m=5/21; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.684841; --ssggCAGGTGccg---
; cor=; Ncor=
a	0	0	6827.0	6430.0	6126.0	3555.0	242.0	27398.0	188.0	751.0	512.0	215.0	1737.0	7059.0	6225.0	0	0	0
c	0	0	7662.0	7964.0	4933.0	5281.0	28432.0	679.0	1197.0	1733.0	1295.0	321.0	18498.0	8618.0	7140.0	0	0	0
g	0	0	9843.0	8658.0	12872.0	18935.0	540.0	1016.0	27724.0	26765.0	635.0	28686.0	5062.0	6754.0	10052.0	0	0	0
t	0	0	5133.0	6413.0	5534.0	1694.0	251.0	372.0	356.0	216.0	27023.0	243.0	4168.0	7034.0	6048.0	0	0	0
MA0521.1_rc_shift3 (Tcf12_rc) 
; dyads_m21 versus MA0521.1_rc (Tcf12_rc); m=6/21; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.670011; ---cwsCAGCTGYy----
; cor=; Ncor=
a	0	0	0	2191.0	3642.0	1682.0	0.0	12895.0	0.0	0.0	0.0	0.0	0.0	17.0	0	0	0	0
c	0	0	0	4836.0	2925.0	3811.0	12895.0	0.0	1889.0	12887.0	0.0	0.0	3951.0	5123.0	0	0	0	0
g	0	0	0	3005.0	2416.0	5527.0	0.0	0.0	10822.0	0.0	0.0	12895.0	124.0	1585.0	0	0	0	0
t	0	0	0	2863.0	3912.0	1875.0	0.0	0.0	184.0	8.0	12895.0	0.0	8820.0	6170.0	0	0	0	0
MA1619.1_shift3 (Ptf1a(var.2)) 
; dyads_m21 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.662798; ---rmaCAGCTGtky---
; cor=; Ncor=
a	0	0	0	1869.0	1978.0	4346.0	49.0	7119.0	34.0	224.0	26.0	27.0	535.0	1221.0	1602.0	0	0	0
c	0	0	0	1803.0	2430.0	1070.0	7149.0	41.0	307.0	6697.0	66.0	27.0	1312.0	1632.0	1977.0	0	0	0
g	0	0	0	1974.0	1629.0	1308.0	28.0	65.0	6689.0	299.0	40.0	7150.0	1065.0	2426.0	1803.0	0	0	0
t	0	0	0	1607.0	1216.0	529.0	27.0	28.0	223.0	33.0	7121.0	49.0	4341.0	1974.0	1871.0	0	0	0
MA1641.1_rc_shift3 (MYF5_rc) 
; dyads_m21 versus MA1641.1_rc (MYF5_rc); m=8/21; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.659974; ---gvaCAGCTGtbc---
; cor=; Ncor=
a	0	0	0	2697.0	3507.0	7489.0	95.0	10966.0	100.0	222.0	129.0	43.0	578.0	1572.0	2554.0	0	0	0
c	0	0	0	2701.0	2985.0	1368.0	10912.0	47.0	230.0	10658.0	69.0	161.0	1774.0	3145.0	3258.0	0	0	0
g	0	0	0	3258.0	3146.0	1775.0	161.0	68.0	10657.0	230.0	47.0	10911.0	1368.0	2986.0	2700.0	0	0	0
t	0	0	0	2554.0	1572.0	578.0	42.0	129.0	223.0	100.0	10965.0	95.0	7490.0	3507.0	2698.0	0	0	0
MA1100.2_shift4 (ASCL1) 
; dyads_m21 versus MA1100.2 (ASCL1); m=9/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.634379; ----rrCAGCTGcy----
; cor=; Ncor=
a	0	0	0	0	1267.0	1334.0	0.0	4413.0	107.0	729.0	118.0	52.0	177.0	843.0	0	0	0	0
c	0	0	0	0	926.0	521.0	4413.0	157.0	1288.0	4413.0	24.0	0.0	3065.0	1487.0	0	0	0	0
g	0	0	0	0	1495.0	3079.0	0.0	60.0	4413.0	1320.0	121.0	4413.0	814.0	889.0	0	0	0	0
t	0	0	0	0	726.0	354.0	14.0	218.0	625.0	20.0	4413.0	29.0	1349.0	1194.0	0	0	0	0
MA0048.2_rc_shift4 (NHLH1_rc) 
; dyads_m21 versus MA0048.2_rc (NHLH1_rc); m=10/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.628128; ----mGCAGCTGCg----
; cor=; Ncor=
a	0	0	0	0	1489.0	350.0	1.0	2166.0	0.0	114.0	0.0	0.0	142.0	111.0	0	0	0	0
c	0	0	0	0	2166.0	102.0	2166.0	4.0	124.0	2166.0	1.0	0.0	2166.0	181.0	0	0	0	0
g	0	0	0	0	736.0	2166.0	4.0	4.0	2166.0	301.0	3.0	2166.0	179.0	2166.0	0	0	0	0
t	0	0	0	0	308.0	296.0	2.0	0.0	96.0	0.0	2166.0	3.0	461.0	788.0	0	0	0	0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc) 
; dyads_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.606974; ----rrCAGCTGbt----
; cor=; Ncor=
a	0	0	0	0	577.0	1015.0	0.0	1504.0	11.0	467.0	137.0	33.0	81.0	170.0	0	0	0	0
c	0	0	0	0	316.0	489.0	1504.0	0.0	72.0	1504.0	33.0	6.0	591.0	357.0	0	0	0	0
g	0	0	0	0	410.0	610.0	0.0	4.0	1504.0	30.0	33.0	1504.0	607.0	281.0	0	0	0	0
t	0	0	0	0	202.0	54.0	0.0	54.0	445.0	11.0	1504.0	47.0	897.0	697.0	0	0	0	0
MA0091.1_rc_shift4 (TAL1::TCF3_rc) 
; dyads_m21 versus MA0091.1_rc (TAL1::TCF3_rc); m=12/21; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.605532; ----AmCAKMTGkTck--
; cor=; Ncor=
a	0	0	0	0	34.0	21.0	1.0	44.0	0.0	32.0	0.0	0.0	0.0	2.0	5.0	9.0	0	0
c	0	0	0	0	2.0	20.0	43.0	0.0	0.0	11.0	0.0	1.0	0.0	3.0	20.0	8.0	0	0
g	0	0	0	0	4.0	3.0	0.0	0.0	32.0	1.0	0.0	43.0	24.0	0.0	10.0	14.0	0	0
t	0	0	0	0	4.0	0.0	0.0	0.0	12.0	0.0	44.0	0.0	20.0	39.0	9.0	13.0	0	0
MA1635.1_shift4 (BHLHE22(var.2)) 
; dyads_m21 versus MA1635.1 (BHLHE22(var.2)); m=13/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.601951; ----csCAGCTGsg----
; cor=; Ncor=
a	0	0	0	0	3886.0	4453.0	0.0	18267.0	1.0	14.0	0.0	14.0	1526.0	4398.0	0	0	0	0
c	0	0	0	0	5621.0	5110.0	18331.0	37.0	53.0	18288.0	52.0	15.0	7269.0	4447.0	0	0	0	0
g	0	0	0	0	4447.0	7267.0	11.0	52.0	18288.0	53.0	37.0	18327.0	5112.0	5625.0	0	0	0	0
t	0	0	0	0	4402.0	1526.0	14.0	0.0	14.0	1.0	18267.0	0.0	4449.0	3886.0	0	0	0	0
MA0691.1_shift4 (TFAP4) 
; dyads_m21 versus MA0691.1 (TFAP4); m=14/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.58979; ----AwCAGCTGwT----
; cor=; Ncor=
a	0	0	0	0	3423.0	2159.0	0.0	3423.0	2.0	21.0	1.0	0.0	1810.0	299.0	0	0	0	0
c	0	0	0	0	500.0	546.0	3423.0	2.0	85.0	3423.0	1.0	1.0	114.0	682.0	0	0	0	0
g	0	0	0	0	337.0	62.0	0.0	0.0	3423.0	49.0	0.0	3423.0	333.0	433.0	0	0	0	0
t	0	0	0	0	228.0	1264.0	0.0	0.0	14.0	6.0	3423.0	0.0	1613.0	3423.0	0	0	0	0
MA0665.1_shift4 (MSC) 
; dyads_m21 versus MA0665.1 (MSC); m=15/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.576689; ----AACAGCTGTT----
; cor=; Ncor=
a	0	0	0	0	69.0	69.0	0.0	69.0	0.0	0.0	0.0	0.0	3.0	0.0	0	0	0	0
c	0	0	0	0	0.0	12.0	69.0	0.0	12.0	69.0	0.0	0.0	10.0	9.0	0	0	0	0
g	0	0	0	0	18.0	3.0	3.0	0.0	69.0	3.0	0.0	69.0	4.0	4.0	0	0	0	0
t	0	0	0	0	7.0	0.0	1.0	0.0	0.0	0.0	69.0	4.0	69.0	69.0	0	0	0	0
MA1529.1_rc_shift0 (NHLH2_rc) 
; dyads_m21 versus MA1529.1_rc (NHLH2_rc); m=16/21; ncol2=18; w=14; offset=-2; strand=R; shift=0; score=0.574977; gkGrCGCAGCTGCKrCcc
; cor=; Ncor=
a	4228.0	3330.0	2533.0	13503.0	740.0	1230.0	0.0	21358.0	0.0	1054.0	1.0	5.0	2634.0	151.0	5394.0	2763.0	5198.0	4143.0
c	2264.0	1579.0	1183.0	1520.0	20977.0	275.0	21363.0	3.0	2266.0	20096.0	26.0	2.0	18930.0	671.0	4908.0	18450.0	13903.0	9732.0
g	11271.0	13462.0	18351.0	7207.0	204.0	20611.0	2.0	14.0	20268.0	2459.0	0.0	21359.0	2324.0	15451.0	6141.0	1065.0	2219.0	2655.0
t	3601.0	6392.0	3766.0	1184.0	210.0	693.0	0.0	0.0	525.0	6.0	21364.0	2.0	2378.0	5603.0	4921.0	3741.0	4312.0	4834.0
MA1648.1_rc_shift3 (TCF12(var.2)_rc) 
; dyads_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/21; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.560077; ---srGCAGGTGss----
; cor=; Ncor=
a	0	0	0	12248.0	16113.0	3412.0	1047.0	53985.0	662.0	1754.0	1733.0	1887.0	10887.0	12473.0	0	0	0	0
c	0	0	0	20060.0	14293.0	2314.0	55922.0	2625.0	3536.0	3780.0	5607.0	1186.0	18560.0	16996.0	0	0	0	0
g	0	0	0	18154.0	17603.0	55061.0	2088.0	3886.0	55765.0	55598.0	2007.0	57848.0	17594.0	19393.0	0	0	0	0
t	0	0	0	11414.0	13867.0	1089.0	2819.0	1380.0	1913.0	744.0	52529.0	955.0	14835.0	13014.0	0	0	0	0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc) 
; dyads_m21 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.558575; ----RACAGCTGTT----
; cor=; Ncor=
a	0	0	0	0	426.0	944.0	0.0	1368.0	0.0	181.0	76.0	0.0	0.0	0.0	0	0	0	0
c	0	0	0	0	0.0	35.0	1368.0	0.0	0.0	1368.0	0.0	0.0	182.0	466.0	0	0	0	0
g	0	0	0	0	943.0	296.0	0.0	0.0	1368.0	0.0	0.0	1368.0	179.0	171.0	0	0	0	0
t	0	0	0	0	0.0	93.0	0.0	0.0	204.0	0.0	1368.0	0.0	1008.0	1368.0	0	0	0	0
MA0522.3_shift4 (TCF3) 
; dyads_m21 versus MA0522.3 (TCF3); m=19/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.551891; ----svCACCTGCss---
; cor=; Ncor=
a	0	0	0	0	6270.0	8032.0	469.0	28916.0	309.0	1127.0	380.0	1089.0	295.0	7276.0	5485.0	0	0	0
c	0	0	0	0	10212.0	9269.0	29379.0	396.0	28640.0	27199.0	2003.0	1038.0	28742.0	8727.0	10122.0	0	0	0
g	0	0	0	0	8539.0	9432.0	708.0	1574.0	1362.0	2652.0	1339.0	28642.0	987.0	8025.0	9222.0	0	0	0
t	0	0	0	0	6240.0	4528.0	705.0	375.0	950.0	283.0	27539.0	492.0	1237.0	7233.0	6432.0	0	0	0
MA0667.1_shift4 (MYF6) 
; dyads_m21 versus MA0667.1 (MYF6); m=20/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.529663; ----AACArCTGTY----
; cor=; Ncor=
a	0	0	0	0	444.0	444.0	0.0	444.0	159.0	12.0	11.0	0.0	2.0	0.0	0	0	0	0
c	0	0	0	0	12.0	18.0	444.0	3.0	30.0	353.0	0.0	2.0	22.0	159.0	0	0	0	0
g	0	0	0	0	70.0	24.0	0.0	7.0	256.0	35.0	0.0	444.0	0.0	7.0	0	0	0	0
t	0	0	0	0	7.0	1.0	0.0	0.0	12.0	56.0	444.0	0.0	444.0	444.0	0	0	0	0
MA0820.1_rc_shift4 (FIGLA_rc) 
; dyads_m21 versus MA0820.1_rc (FIGLA_rc); m=21/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.507949; ----wmCAGGTGkw----
; cor=; Ncor=
a	0	0	0	0	753.0	832.0	65.0	1780.0	0.0	0.0	14.0	29.0	237.0	449.0	0	0	0	0
c	0	0	0	0	289.0	569.0	1780.0	17.0	311.0	527.0	0.0	0.0	160.0	175.0	0	0	0	0
g	0	0	0	0	283.0	225.0	33.0	0.0	1780.0	1780.0	46.0	1780.0	693.0	270.0	0	0	0	0
t	0	0	0	0	455.0	154.0	36.0	56.0	9.0	0.0	1780.0	0.0	690.0	886.0	0	0	0	0