One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m22/peak-motifs_dyads_m22.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m22/peak-motifs_dyads_m22_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m22_shift3 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m22_shift3 (dyads_m22dyads_m22)
; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=10; shift=3; ncol=13; ---wmCAAATGst ; Alignment reference a 0 0 0 11 9 0 21 21 21 0 0 1 5 c 0 0 0 3 7 21 0 0 0 0 0 10 5 g 0 0 0 1 2 0 0 0 0 0 21 6 5 t 0 0 0 6 3 0 0 0 0 21 0 4 6

MA0461.2_shift3 (Atoh1)
; dyads_m22 versus MA0461.2 (Atoh1); m=1/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.772287; ---rmCATATGky ; cor=; Ncor= a 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0

MA1638.1_shift3 (HAND2)
; dyads_m22 versus MA1638.1 (HAND2); m=2/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.758422; ---amCAGATGby ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0

MA0633.1_rc_shift3 (Twist2_rc)
; dyads_m22 versus MA0633.1_rc (Twist2_rc); m=3/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.75634; ---mACATATGky ; cor=; Ncor= a 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 c 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 g 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 t 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0

MA1108.2_shift3 (MXI1)
; dyads_m22 versus MA1108.2 (MXI1); m=4/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.751815; ---rvCACATGkc ; cor=; Ncor= a 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 c 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 g 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 t 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0

MA1468.1_shift3 (ATOH7)
; dyads_m22 versus MA1468.1 (ATOH7); m=5/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.747184; ---AmCATATGky ; cor=; Ncor= a 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0

MA0818.1_shift3 (BHLHE22)
; dyads_m22 versus MA0818.1 (BHLHE22); m=6/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.744777; ---AmCATATGyy ; cor=; Ncor= a 0 0 0 520.0 189.0 6.0 520.0 0.0 520.0 11.0 0.0 4.0 36.0 c 0 0 0 26.0 229.0 520.0 6.0 2.0 4.0 48.0 2.0 193.0 254.0 g 0 0 0 172.0 99.0 0.0 24.0 0.0 2.0 0.0 520.0 123.0 21.0 t 0 0 0 21.0 4.0 0.0 8.0 520.0 2.0 520.0 4.0 201.0 520.0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; dyads_m22 versus MA1570.1_rc (TFAP4(var.2)_rc); m=7/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.741622; ---amCAyrTGdt ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0

MA0100.3_shift3 (MYB)
; dyads_m22 versus MA0100.3 (MYB); m=8/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.74109; ---mbCAACTGhm ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0

MA0826.1_shift3 (OLIG1)
; dyads_m22 versus MA0826.1 (OLIG1); m=9/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.740897; ---AmCATATGkT ; cor=; Ncor= a 0 0 0 11391.0 5931.0 52.0 11391.0 12.0 11391.0 195.0 0.0 12.0 490.0 c 0 0 0 240.0 4142.0 11391.0 1.0 15.0 80.0 175.0 0.0 2082.0 2812.0 g 0 0 0 1526.0 1321.0 0.0 139.0 113.0 17.0 0.0 11391.0 4568.0 257.0 t 0 0 0 205.0 0.0 0.0 80.0 11391.0 10.0 11391.0 74.0 4730.0 11391.0

MA0827.1_shift3 (OLIG3)
; dyads_m22 versus MA0827.1 (OLIG3); m=10/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.735691; ---AmCATATGby ; cor=; Ncor= a 0 0 0 1915.0 800.0 222.0 1915.0 0.0 1915.0 56.0 4.0 28.0 265.0 c 0 0 0 204.0 1115.0 1915.0 10.0 26.0 103.0 224.0 4.0 662.0 964.0 g 0 0 0 427.0 208.0 0.0 99.0 72.0 11.0 2.0 1915.0 904.0 176.0 t 0 0 0 132.0 6.0 3.0 22.0 1915.0 0.0 1915.0 275.0 1010.0 1915.0

MA0678.1_shift3 (OLIG2)
; dyads_m22 versus MA0678.1 (OLIG2); m=11/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.733957; ---AmCATATGky ; cor=; Ncor= a 0 0 0 1609.0 680.0 74.0 1609.0 0.0 1609.0 21.0 10.0 4.0 146.0 c 0 0 0 90.0 929.0 1609.0 2.0 0.0 22.0 159.0 3.0 396.0 689.0 g 0 0 0 283.0 142.0 4.0 53.0 0.0 18.0 0.0 1609.0 866.0 57.0 t 0 0 0 108.0 16.0 0.0 22.0 1609.0 4.0 1609.0 117.0 744.0 1609.0

MA0669.1_shift3 (NEUROG2)
; dyads_m22 versus MA0669.1 (NEUROG2); m=12/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.727348; ---raCATATGtY ; cor=; Ncor= a 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 c 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 g 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 t 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0

MA0623.2_shift3 (NEUROG1)
; dyads_m22 versus MA0623.2 (NEUROG1); m=13/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.726845; ---raCATATGky ; cor=; Ncor= a 0 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 c 0 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 g 0 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 t 0 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0

MA0668.1_rc_shift3 (NEUROD2_rc)
; dyads_m22 versus MA0668.1_rc (NEUROD2_rc); m=14/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.716048; ---rmCATATGky ; cor=; Ncor= a 0 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 c 0 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 g 0 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 t 0 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0

MA1524.1_rc_shift2 (MSGN1_rc)
; dyads_m22 versus MA1524.1_rc (MSGN1_rc); m=15/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.680842; --srmCAwwTGGy ; cor=; Ncor= a 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 c 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 g 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 t 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0

MA0607.1_rc_shift4 (Bhlha15_rc)
; dyads_m22 versus MA0607.1_rc (Bhlha15_rc); m=16/27; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.622381; ----aCATATGs- ; cor=; Ncor= a 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0

MA0817.1_shift2 (BHLHE23)
; dyads_m22 versus MA0817.1 (BHLHE23); m=17/27; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.618803; --aAmCATATGkT ; cor=; Ncor= a 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 c 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 g 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 t 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0

MA0091.1_rc_shift3 (TAL1::TCF3_rc)
; dyads_m22 versus MA0091.1_rc (TAL1::TCF3_rc); m=18/27; ncol2=12; w=10; offset=0; strand=R; shift=3; score=0.59928; ---AmCAKMTGkT ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0

MA1568.1_rc_shift2 (TCF21(var.2)_rc)
; dyads_m22 versus MA1568.1_rc (TCF21(var.2)_rc); m=19/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.591196; --yrmCATATGGt ; cor=; Ncor= a 0 0 105.0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 c 0 0 315.0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 g 0 0 150.0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 t 0 0 301.0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0

MA1642.1_shift1 (NEUROG2(var.2))
; dyads_m22 versus MA1642.1 (NEUROG2(var.2)); m=20/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.577374; -rrraCAGATGGy ; cor=; Ncor= a 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0

MA1618.1_shift2 (Ptf1a)
; dyads_m22 versus MA1618.1 (Ptf1a); m=21/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.567014; --dmaCAGATGtt ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0

MA1123.2_shift1 (TWIST1)
; dyads_m22 versus MA1123.2 (TWIST1); m=22/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.558119; -awwCCAGATGtb ; cor=; Ncor= a 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 c 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 g 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 t 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0

MA1109.1_shift2 (NEUROD1)
; dyads_m22 versus MA1109.1 (NEUROD1); m=23/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.549392; --graCAGATGGy ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0

MA0507.1_rc_shift0 (POU2F2_rc)
; dyads_m22 versus MA0507.1_rc (POU2F2_rc); m=24/27; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.54504; wyATGCAAATkmr ; cor=; Ncor= a 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 c 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 g 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 t 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0

MA0514.1_rc_shift1 (Sox3_rc)
; dyads_m22 versus MA0514.1_rc (Sox3_rc); m=25/27; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.487129; -rrrACAAAGG-- ; cor=; Ncor= a 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0

MA0792.1_shift1 (POU5F1B)
; dyads_m22 versus MA0792.1 (POU5F1B); m=26/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.418926; -TATGywAAT--- ; cor=; Ncor= a 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 0 c 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 0 g 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 0 t 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0 0

MA0789.1_shift1 (POU3F4)
; dyads_m22 versus MA0789.1 (POU3F4); m=27/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.408937; -TATGCwAAT--- ; cor=; Ncor= a 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 0 c 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 0 g 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 0 t 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m22_shift3 (dyads_m22dyads_m22)				; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=10; shift=3; ncol=13; ---wmCAAATGst ; Alignment reference a 0 0 0 11 9 0 21 21 21 0 0 1 5 c 0 0 0 3 7 21 0 0 0 0 0 10 5 g 0 0 0 1 2 0 0 0 0 0 21 6 5 t 0 0 0 6 3 0 0 0 0 21 0 4 6
MA0461.2_shift3 (Atoh1)				; dyads_m22 versus MA0461.2 (Atoh1); m=1/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.772287; ---rmCATATGky ; cor=; Ncor= a 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0
MA1638.1_shift3 (HAND2)				; dyads_m22 versus MA1638.1 (HAND2); m=2/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.758422; ---amCAGATGby ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0
MA0633.1_rc_shift3 (Twist2_rc)				; dyads_m22 versus MA0633.1_rc (Twist2_rc); m=3/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.75634; ---mACATATGky ; cor=; Ncor= a 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 c 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 g 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 t 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0
MA1108.2_shift3 (MXI1)				; dyads_m22 versus MA1108.2 (MXI1); m=4/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.751815; ---rvCACATGkc ; cor=; Ncor= a 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 c 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 g 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 t 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0
MA1468.1_shift3 (ATOH7)				; dyads_m22 versus MA1468.1 (ATOH7); m=5/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.747184; ---AmCATATGky ; cor=; Ncor= a 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0
MA0818.1_shift3 (BHLHE22)				; dyads_m22 versus MA0818.1 (BHLHE22); m=6/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.744777; ---AmCATATGyy ; cor=; Ncor= a 0 0 0 520.0 189.0 6.0 520.0 0.0 520.0 11.0 0.0 4.0 36.0 c 0 0 0 26.0 229.0 520.0 6.0 2.0 4.0 48.0 2.0 193.0 254.0 g 0 0 0 172.0 99.0 0.0 24.0 0.0 2.0 0.0 520.0 123.0 21.0 t 0 0 0 21.0 4.0 0.0 8.0 520.0 2.0 520.0 4.0 201.0 520.0
MA1570.1_rc_shift3 (TFAP4(var.2)_rc)				; dyads_m22 versus MA1570.1_rc (TFAP4(var.2)_rc); m=7/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.741622; ---amCAyrTGdt ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0
MA0100.3_shift3 (MYB)				; dyads_m22 versus MA0100.3 (MYB); m=8/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.74109; ---mbCAACTGhm ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0
MA0826.1_shift3 (OLIG1)				; dyads_m22 versus MA0826.1 (OLIG1); m=9/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.740897; ---AmCATATGkT ; cor=; Ncor= a 0 0 0 11391.0 5931.0 52.0 11391.0 12.0 11391.0 195.0 0.0 12.0 490.0 c 0 0 0 240.0 4142.0 11391.0 1.0 15.0 80.0 175.0 0.0 2082.0 2812.0 g 0 0 0 1526.0 1321.0 0.0 139.0 113.0 17.0 0.0 11391.0 4568.0 257.0 t 0 0 0 205.0 0.0 0.0 80.0 11391.0 10.0 11391.0 74.0 4730.0 11391.0
MA0827.1_shift3 (OLIG3)				; dyads_m22 versus MA0827.1 (OLIG3); m=10/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.735691; ---AmCATATGby ; cor=; Ncor= a 0 0 0 1915.0 800.0 222.0 1915.0 0.0 1915.0 56.0 4.0 28.0 265.0 c 0 0 0 204.0 1115.0 1915.0 10.0 26.0 103.0 224.0 4.0 662.0 964.0 g 0 0 0 427.0 208.0 0.0 99.0 72.0 11.0 2.0 1915.0 904.0 176.0 t 0 0 0 132.0 6.0 3.0 22.0 1915.0 0.0 1915.0 275.0 1010.0 1915.0
MA0678.1_shift3 (OLIG2)				; dyads_m22 versus MA0678.1 (OLIG2); m=11/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.733957; ---AmCATATGky ; cor=; Ncor= a 0 0 0 1609.0 680.0 74.0 1609.0 0.0 1609.0 21.0 10.0 4.0 146.0 c 0 0 0 90.0 929.0 1609.0 2.0 0.0 22.0 159.0 3.0 396.0 689.0 g 0 0 0 283.0 142.0 4.0 53.0 0.0 18.0 0.0 1609.0 866.0 57.0 t 0 0 0 108.0 16.0 0.0 22.0 1609.0 4.0 1609.0 117.0 744.0 1609.0
MA0669.1_shift3 (NEUROG2)				; dyads_m22 versus MA0669.1 (NEUROG2); m=12/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.727348; ---raCATATGtY ; cor=; Ncor= a 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 c 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 g 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 t 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0
MA0623.2_shift3 (NEUROG1)				; dyads_m22 versus MA0623.2 (NEUROG1); m=13/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.726845; ---raCATATGky ; cor=; Ncor= a 0 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 c 0 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 g 0 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 t 0 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0
MA0668.1_rc_shift3 (NEUROD2_rc)				; dyads_m22 versus MA0668.1_rc (NEUROD2_rc); m=14/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.716048; ---rmCATATGky ; cor=; Ncor= a 0 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 c 0 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 g 0 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 t 0 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0
MA1524.1_rc_shift2 (MSGN1_rc)				; dyads_m22 versus MA1524.1_rc (MSGN1_rc); m=15/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.680842; --srmCAwwTGGy ; cor=; Ncor= a 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 c 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 g 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 t 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0
MA0607.1_rc_shift4 (Bhlha15_rc)				; dyads_m22 versus MA0607.1_rc (Bhlha15_rc); m=16/27; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.622381; ----aCATATGs- ; cor=; Ncor= a 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0
MA0817.1_shift2 (BHLHE23)				; dyads_m22 versus MA0817.1 (BHLHE23); m=17/27; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.618803; --aAmCATATGkT ; cor=; Ncor= a 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 c 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 g 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 t 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0
MA0091.1_rc_shift3 (TAL1::TCF3_rc)				; dyads_m22 versus MA0091.1_rc (TAL1::TCF3_rc); m=18/27; ncol2=12; w=10; offset=0; strand=R; shift=3; score=0.59928; ---AmCAKMTGkT ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0
MA1568.1_rc_shift2 (TCF21(var.2)_rc)				; dyads_m22 versus MA1568.1_rc (TCF21(var.2)_rc); m=19/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.591196; --yrmCATATGGt ; cor=; Ncor= a 0 0 105.0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 c 0 0 315.0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 g 0 0 150.0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 t 0 0 301.0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0
MA1642.1_shift1 (NEUROG2(var.2))				; dyads_m22 versus MA1642.1 (NEUROG2(var.2)); m=20/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.577374; -rrraCAGATGGy ; cor=; Ncor= a 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0
MA1618.1_shift2 (Ptf1a)				; dyads_m22 versus MA1618.1 (Ptf1a); m=21/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.567014; --dmaCAGATGtt ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0
MA1123.2_shift1 (TWIST1)				; dyads_m22 versus MA1123.2 (TWIST1); m=22/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.558119; -awwCCAGATGtb ; cor=; Ncor= a 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 c 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 g 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 t 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0
MA1109.1_shift2 (NEUROD1)				; dyads_m22 versus MA1109.1 (NEUROD1); m=23/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.549392; --graCAGATGGy ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0
MA0507.1_rc_shift0 (POU2F2_rc)				; dyads_m22 versus MA0507.1_rc (POU2F2_rc); m=24/27; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.54504; wyATGCAAATkmr ; cor=; Ncor= a 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 c 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 g 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 t 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0
MA0514.1_rc_shift1 (Sox3_rc)				; dyads_m22 versus MA0514.1_rc (Sox3_rc); m=25/27; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.487129; -rrrACAAAGG-- ; cor=; Ncor= a 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0
MA0792.1_shift1 (POU5F1B)				; dyads_m22 versus MA0792.1 (POU5F1B); m=26/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.418926; -TATGywAAT--- ; cor=; Ncor= a 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 0 c 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 0 g 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 0 t 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0 0
MA0789.1_shift1 (POU3F4)				; dyads_m22 versus MA0789.1 (POU3F4); m=27/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.408937; -TATGCwAAT--- ; cor=; Ncor= a 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 0 c 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 0 g 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 0 t 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0 0