One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m24/peak-motifs_dyads_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m24/peak-motifs_dyads_m24_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m24_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m24_shift0 (dyads_m24dyads_m24)				; dyads_m24 (dyads_m24dyads_m24); m=0 (reference); ncol1=18; shift=0; ncol=18; ygRRAAAmsTGAAAAwyr ; Alignment reference a 3 8 25 24 32 34 33 13 3 3 0 33 33 34 34 20 1 12 c 12 0 0 0 2 0 1 20 14 0 0 0 0 0 0 0 10 0 g 2 20 9 9 0 0 0 1 15 0 34 1 1 0 0 0 6 21 t 17 6 0 1 0 0 0 0 2 31 0 0 0 0 0 14 17 1
MA1118.1_shift3 (SIX1)				; dyads_m24 versus MA1118.1 (SIX1); m=1/2; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.441277; ---GwAACCTGAkm---- ; cor=; Ncor= a 0 0 0 96.0 400.0 1049.0 1076.0 43.0 112.0 51.0 48.0 1070.0 146.0 546.0 0 0 0 0 c 0 0 0 43.0 77.0 18.0 8.0 959.0 871.0 46.0 9.0 7.0 179.0 360.0 0 0 0 0 g 0 0 0 859.0 90.0 6.0 10.0 12.0 31.0 30.0 1025.0 11.0 289.0 73.0 0 0 0 0 t 0 0 0 110.0 541.0 35.0 14.0 94.0 94.0 981.0 26.0 20.0 494.0 129.0 0 0 0 0
MA0606.1_rc_shift7 (NFAT5_rc)				; dyads_m24 versus MA0606.1_rc (NFAT5_rc); m=2/2; ncol2=10; w=10; offset=7; strand=R; shift=7; score=0.40924; -------wrTGGAAAat- ; cor=; Ncor= a 0 0 0 0 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 c 0 0 0 0 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 g 0 0 0 0 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 t 0 0 0 0 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0