Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25.tf
		file1	1	17	15
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m25 MA0832.1 dyads_m25dyads_m25 Tcf21 0.863 0.711 17 14 14 17 0.8235 0.8235 1.0000 D 0
dyads_m25 MA1485.1 dyads_m25dyads_m25 FERD3L 0.749 0.617 17 14 14 17 0.8235 0.8235 1.0000 R 0
dyads_m25 MA0500.2 dyads_m25dyads_m25 MYOG 0.846 0.597 17 12 12 17 0.7059 0.7059 1.0000 R 1
dyads_m25 MA0499.2 dyads_m25dyads_m25 MYOD1 0.759 0.580 17 13 13 17 0.7647 0.7647 1.0000 R 0
dyads_m25 MA1641.1 dyads_m25dyads_m25 MYF5 0.807 0.570 17 12 12 17 0.7059 0.7059 1.0000 D 1
dyads_m25 MA0521.1 dyads_m25dyads_m25 Tcf12 0.874 0.565 17 11 11 17 0.6471 0.6471 1.0000 D 2
dyads_m25 MA1619.1 dyads_m25dyads_m25 Ptf1a(var.2) 0.798 0.563 17 12 12 17 0.7059 0.7059 1.0000 D 1
dyads_m25 MA0816.1 dyads_m25dyads_m25 Ascl2 0.932 0.548 17 10 10 17 0.5882 0.5882 1.0000 D 2
dyads_m25 MA1618.1 dyads_m25dyads_m25 Ptf1a 0.713 0.545 17 13 13 17 0.7647 0.7647 1.0000 R 0
dyads_m25 MA0091.1 dyads_m25dyads_m25 TAL1::TCF3 0.771 0.545 17 12 12 17 0.7059 0.7059 1.0000 D 0
dyads_m25 MA0665.1 dyads_m25dyads_m25 MSC 0.905 0.532 17 10 10 17 0.5882 0.5882 1.0000 D 2
dyads_m25 MA0691.1 dyads_m25dyads_m25 TFAP4 0.888 0.523 17 10 10 17 0.5882 0.5882 1.0000 D 2
dyads_m25 MA1472.1 dyads_m25dyads_m25 BHLHA15(var.2) 0.879 0.517 17 10 10 17 0.5882 0.5882 1.0000 R 2
dyads_m25 MA0667.1 dyads_m25dyads_m25 MYF6 0.855 0.503 17 10 10 17 0.5882 0.5882 1.0000 R 2
dyads_m25 MA1467.1 dyads_m25dyads_m25 ATOH1(var.2) 0.854 0.503 17 10 10 17 0.5882 0.5882 1.0000 R 2
dyads_m25 MA1100.2 dyads_m25dyads_m25 ASCL1 0.828 0.487 17 10 10 17 0.5882 0.5882 1.0000 R 2
dyads_m25 MA1635.1 dyads_m25dyads_m25 BHLHE22(var.2) 0.809 0.476 17 10 10 17 0.5882 0.5882 1.0000 D 2
dyads_m25 MA1655.1 dyads_m25dyads_m25 ZNF341 0.773 0.473 17 12 11 18 0.6111 0.6471 0.9167 D -1
dyads_m25 MA0048.2 dyads_m25dyads_m25 NHLH1 0.795 0.468 17 10 10 17 0.5882 0.5882 1.0000 D 2
dyads_m25 MA0820.1 dyads_m25dyads_m25 FIGLA 0.751 0.442 17 10 10 17 0.5882 0.5882 1.0000 D 2 
 Host name	pedagogix
 Job started	2020-04-13.205204
 Job done	2020-04-13.205220
 Seconds	2.5
	user	2.5
	system	0.31
	cuser	12.92
;	csystem	0.99