One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m25/peak-motifs_dyads_m25_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m25_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m25_shift1 (dyads_m25dyads_m25)
; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=17; shift=1; ncol=18; -dkAACAGCTGCTGyCyt ; Alignment reference a 0 4 2 12 13 0 15 0 0 3 0 1 1 0 2 0 3 3 c 0 2 3 1 0 15 0 1 15 0 0 12 0 1 4 12 4 3 g 0 4 6 2 2 0 0 13 0 0 15 0 0 13 1 1 0 3 t 0 5 4 0 0 0 0 1 0 12 0 2 14 1 8 2 8 6

MA0832.1_shift1 (Tcf21)
; dyads_m25 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.71051; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m25 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.616578; -GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m25 versus MA0500.2_rc (MYOG_rc); m=3/20; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.597222; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m25 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.580397; -rkrACAGGTGcwg---- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0

MA1641.1_shift2 (MYF5)
; dyads_m25 versus MA1641.1 (MYF5); m=5/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.569539; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; dyads_m25 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.56528; ---rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m25 versus MA1619.1 (Ptf1a(var.2)); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.563369; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m25 versus MA0816.1 (Ascl2); m=8/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.548385; ---arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; dyads_m25 versus MA1618.1_rc (Ptf1a_rc); m=9/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.545304; -dmaaCATCTGtkh---- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; dyads_m25 versus MA0091.1 (TAL1::TCF3); m=10/20; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.544554; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m25 versus MA0665.1 (MSC); m=11/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.532233; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m25 versus MA0691.1 (TFAP4); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.522601; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m25 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.517149; ---rrCAGCTGbt----- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m25 versus MA0667.1_rc (MYF6_rc); m=14/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502897; ---RACAGyTGTT----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m25 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502638; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m25 versus MA1100.2_rc (ASCL1_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.487063; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m25 versus MA1635.1 (BHLHE22(var.2)); m=17/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.475638; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; dyads_m25 versus MA1655.1 (ZNF341); m=18/20; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.472656; grGAACAGCcas------ ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; dyads_m25 versus MA0048.2 (NHLH1); m=19/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.467729; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA0820.1_shift3 (FIGLA)
; dyads_m25 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.441821; ---wmCACCTGkw----- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m25_shift1 (dyads_m25dyads_m25)				; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=17; shift=1; ncol=18; -dkAACAGCTGCTGyCyt ; Alignment reference a 0 4 2 12 13 0 15 0 0 3 0 1 1 0 2 0 3 3 c 0 2 3 1 0 15 0 1 15 0 0 12 0 1 4 12 4 3 g 0 4 6 2 2 0 0 13 0 0 15 0 0 13 1 1 0 3 t 0 5 4 0 0 0 0 1 0 12 0 2 14 1 8 2 8 6
MA0832.1_shift1 (Tcf21)				; dyads_m25 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.71051; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; dyads_m25 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.616578; -GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0
MA0500.2_rc_shift2 (MYOG_rc)				; dyads_m25 versus MA0500.2_rc (MYOG_rc); m=3/20; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.597222; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0
MA0499.2_rc_shift1 (MYOD1_rc)				; dyads_m25 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.580397; -rkrACAGGTGcwg---- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0
MA1641.1_shift2 (MYF5)				; dyads_m25 versus MA1641.1 (MYF5); m=5/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.569539; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0
MA0521.1_shift3 (Tcf12)				; dyads_m25 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.56528; ---rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; dyads_m25 versus MA1619.1 (Ptf1a(var.2)); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.563369; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0
MA0816.1_shift3 (Ascl2)				; dyads_m25 versus MA0816.1 (Ascl2); m=8/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.548385; ---arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0
MA1618.1_rc_shift1 (Ptf1a_rc)				; dyads_m25 versus MA1618.1_rc (Ptf1a_rc); m=9/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.545304; -dmaaCATCTGtkh---- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0
MA0091.1_shift1 (TAL1::TCF3)				; dyads_m25 versus MA0091.1 (TAL1::TCF3); m=10/20; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.544554; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0
MA0665.1_shift3 (MSC)				; dyads_m25 versus MA0665.1 (MSC); m=11/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.532233; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0
MA0691.1_shift3 (TFAP4)				; dyads_m25 versus MA0691.1 (TFAP4); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.522601; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; dyads_m25 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.517149; ---rrCAGCTGbt----- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0
MA0667.1_rc_shift3 (MYF6_rc)				; dyads_m25 versus MA0667.1_rc (MYF6_rc); m=14/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502897; ---RACAGyTGTT----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; dyads_m25 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502638; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; dyads_m25 versus MA1100.2_rc (ASCL1_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.487063; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; dyads_m25 versus MA1635.1 (BHLHE22(var.2)); m=17/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.475638; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0
MA1655.1_shift0 (ZNF341)				; dyads_m25 versus MA1655.1 (ZNF341); m=18/20; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.472656; grGAACAGCcas------ ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0
MA0048.2_shift3 (NHLH1)				; dyads_m25 versus MA0048.2 (NHLH1); m=19/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.467729; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0
MA0820.1_shift3 (FIGLA)				; dyads_m25 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.441821; ---wmCACCTGkw----- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0