One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m26/peak-motifs_dyads_m26_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m26_shift5 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
dyads_m26_shift5 (dyads_m26dyads_m26)     
; dyads_m26 (dyads_m26dyads_m26); m=0 (reference); ncol1=12; shift=5; ncol=17; -----csCCGcsGCGss
; Alignment reference
a	0	0	0	0	0	1	0	1	0	1	4	3	0	1	0	3	2
c	0	0	0	0	0	19	15	25	27	1	15	13	2	24	3	10	8
g	0	0	0	0	0	6	10	2	1	26	6	11	24	2	25	12	16
t	0	0	0	0	0	2	3	0	0	0	3	1	2	1	0	3	2
MA0697.1_shift1 (ZIC3) 
; dyads_m26 versus MA0697.1 (ZIC3); m=1/5; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.553415; -gACCCCCYGCtGyGh-
; cor=; Ncor=
a	0	20.0	163.0	7.0	7.0	22.0	0.0	0.0	0.0	22.0	4.0	18.0	3.0	24.0	3.0	56.0	0
c	0	50.0	32.0	203.0	204.0	188.0	209.0	206.0	142.0	5.0	178.0	26.0	0.0	89.0	2.0	79.0	0
g	0	163.0	43.0	0.0	3.0	0.0	0.0	0.0	0.0	217.0	6.0	53.0	225.0	13.0	214.0	13.0	0
t	0	69.0	0.0	4.0	7.0	19.0	0.0	0.0	61.0	2.0	29.0	163.0	3.0	74.0	23.0	53.0	0
MA0751.1_shift1 (ZIC4) 
; dyads_m26 versus MA0751.1 (ZIC4); m=2/5; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.533236; -krCCCCCyGykGyGh-
; cor=; Ncor=
a	0	578.0	3013.0	315.0	209.0	614.0	8.0	114.0	24.0	1095.0	24.0	1052.0	258.0	704.0	74.0	1083.0	0
c	0	934.0	812.0	2870.0	2890.0	2757.0	2999.0	2985.0	2222.0	68.0	2279.0	865.0	18.0	1044.0	452.0	1224.0	0
g	0	4126.0	1553.0	52.0	121.0	225.0	0.0	0.0	6.0	4795.0	252.0	1903.0	5086.0	599.0	4522.0	363.0	0
t	0	1887.0	21.0	98.0	147.0	275.0	1.0	11.0	1078.0	69.0	1017.0	3488.0	67.0	1454.0	1156.0	916.0	0
MA1584.1_shift0 (ZIC5) 
; dyads_m26 versus MA1584.1 (ZIC5); m=3/5; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.517538; mgACCCCCCGCtGyGm-
; cor=; Ncor=
a	6068.0	555.0	19266.0	250.0	147.0	1311.0	5.0	67.0	10.0	2110.0	2.0	2536.0	251.0	5255.0	52.0	8073.0	0
c	6877.0	3318.0	2320.0	21201.0	21163.0	20221.0	21263.0	21235.0	17685.0	21.0	19607.0	3844.0	8.0	9445.0	1733.0	11606.0	0
g	5212.0	17329.0	2765.0	0.0	58.0	470.0	0.0	2.0	0.0	20412.0	235.0	3252.0	21153.0	1725.0	19961.0	792.0	0
t	3106.0	5687.0	0.0	17.0	57.0	328.0	1.0	2.0	3577.0	23.0	5843.0	18007.0	2.0	10267.0	2756.0	5356.0	0
MA0696.1_shift1 (ZIC1) 
; dyads_m26 versus MA0696.1 (ZIC1); m=4/5; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.475885; -gACCCCCyGCTGyG--
; cor=; Ncor=
a	0	1113.0	22722.0	836.0	1264.0	2606.0	0.0	185.0	22.0	2156.0	23.0	1215.0	73.0	3121.0	35.0	0	0
c	0	3934.0	2660.0	28949.0	29217.0	25527.0	29399.0	29532.0	18412.0	45.0	27426.0	1757.0	24.0	7693.0	520.0	0	0
g	0	25702.0	7408.0	58.0	204.0	327.0	4.0	10.0	0.0	31995.0	439.0	5531.0	34649.0	1690.0	34431.0	0	0
t	0	8960.0	23.0	125.0	281.0	927.0	7.0	14.0	10313.0	14.0	6735.0	27084.0	1.0	16190.0	2725.0	0	0
MA0736.1_shift1 (GLIS2) 
; dyads_m26 versus MA0736.1 (GLIS2); m=5/5; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.450557; -kACCCCCCrCramG--
; cor=; Ncor=
a	0	74.0	813.0	3.0	4.0	7.0	2.0	56.0	52.0	412.0	3.0	459.0	484.0	407.0	15.0	0	0
c	0	179.0	94.0	1072.0	1074.0	1074.0	1087.0	1061.0	1056.0	12.0	1080.0	36.0	16.0	265.0	187.0	0	0
g	0	929.0	130.0	3.0	0.0	0.0	0.0	0.0	1.0	915.0	28.0	909.0	234.0	112.0	1051.0	0	0
t	0	439.0	1.0	5.0	1.0	14.0	0.0	4.0	99.0	50.0	69.0	64.0	228.0	197.0	63.0	0	0