One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m3_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m3_shift0 (dyads_m3dyads_m3)
; dyads_m3 (dyads_m3dyads_m3); m=0 (reference); ncol1=15; shift=0; ncol=15; rmArCAGCTGTCwyy ; Alignment reference a 8 6 20 13 0 22 0 1 0 0 0 0 7 3 5 c 3 10 2 1 22 0 1 20 0 0 2 17 5 9 7 g 6 4 0 7 0 0 21 1 0 22 0 3 2 4 4 t 5 2 0 1 0 0 0 0 22 0 20 2 8 6 6

MA0832.1_rc_shift0 (Tcf21_rc)
; dyads_m3 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.82518; ryAACAGCTGTTry- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift0 (FERD3L)
; dyads_m3 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.747264; GyrmCAGCTGTyAC- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA1641.1_rc_shift1 (MYF5_rc)
; dyads_m3 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.727563; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m3 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.720817; svmaCACCTGtsyc- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1619.1_shift1 (Ptf1a(var.2))
; dyads_m3 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.716077; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0499.2_shift1 (MYOD1)
; dyads_m3 versus MA0499.2 (MYOD1); m=6/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.706549; -cwgCACCTGTymy- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; dyads_m3 versus MA0500.2_rc (MYOG_rc); m=7/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.690954; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; dyads_m3 versus MA1618.1_rc (Ptf1a_rc); m=8/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.690205; dmaaCATCTGtkh-- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; dyads_m3 versus MA0521.1_rc (Tcf12_rc); m=9/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.650243; -cwsCAGCTGYy--- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; dyads_m3 versus MA1467.1 (ATOH1(var.2)); m=10/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.647487; --AACAGCTGTY--- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0745.2_shift1 (SNAI2)
; dyads_m3 versus MA0745.2 (SNAI2); m=11/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.625494; -aygCACCTGTmry- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)
; dyads_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.621109; -rmaCAGGTGtky-- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; dyads_m3 versus MA0665.1_rc (MSC_rc); m=13/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.613156; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; dyads_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.602962; --avCAGCTGyy--- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0667.1_shift2 (MYF6)
; dyads_m3 versus MA0667.1 (MYF6); m=15/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.597259; --AACArCTGTY--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; dyads_m3 versus MA0796.1_rc (TGIF1_rc); m=16/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.587159; -TGACAGCTGTCA-- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m3 versus MA0816.1 (Ascl2); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.586559; --arCAGCTGyy--- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0091.1_shift0 (TAL1::TCF3)
; dyads_m3 versus MA0091.1 (TAL1::TCF3); m=18/29; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.585506; mgAmCAKMTGkT--- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA1571.1_rc_shift1 (TGIF2LX_rc)
; dyads_m3 versus MA1571.1_rc (TGIF2LX_rc); m=19/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.585441; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0691.1_shift2 (TFAP4)
; dyads_m3 versus MA0691.1 (TFAP4); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.581097; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; dyads_m3 versus MA0797.1_rc (TGIF2_rc); m=21/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.574553; -TGACAsCTGTCA-- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_shift1 (TGIF2LY)
; dyads_m3 versus MA1572.1 (TGIF2LY); m=22/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.573539; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; dyads_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554866; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1100.2_shift2 (ASCL1)
; dyads_m3 versus MA1100.2 (ASCL1); m=24/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553419; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m3 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.516132; --wmCACCTGkw--- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; dyads_m3 versus MA0048.2_rc (NHLH1_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.502625; --mGCAGCTGCg--- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1570.1_shift2 (TFAP4(var.2))
; dyads_m3 versus MA1570.1 (TFAP4(var.2)); m=27/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.466888; --ahCAyrTGkt--- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; dyads_m3 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.444323; ------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; dyads_m3 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.429033; ------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m3_shift0 (dyads_m3dyads_m3)				; dyads_m3 (dyads_m3dyads_m3); m=0 (reference); ncol1=15; shift=0; ncol=15; rmArCAGCTGTCwyy ; Alignment reference a 8 6 20 13 0 22 0 1 0 0 0 0 7 3 5 c 3 10 2 1 22 0 1 20 0 0 2 17 5 9 7 g 6 4 0 7 0 0 21 1 0 22 0 3 2 4 4 t 5 2 0 1 0 0 0 0 22 0 20 2 8 6 6
MA0832.1_rc_shift0 (Tcf21_rc)				; dyads_m3 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.82518; ryAACAGCTGTTry- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA1485.1_shift0 (FERD3L)				; dyads_m3 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.747264; GyrmCAGCTGTyAC- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA1641.1_rc_shift1 (MYF5_rc)				; dyads_m3 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.727563; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1621.1_shift0 (Rbpjl)				; dyads_m3 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.720817; svmaCACCTGtsyc- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0
MA1619.1_shift1 (Ptf1a(var.2))				; dyads_m3 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.716077; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0499.2_shift1 (MYOD1)				; dyads_m3 versus MA0499.2 (MYOD1); m=6/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.706549; -cwgCACCTGTymy- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0500.2_rc_shift1 (MYOG_rc)				; dyads_m3 versus MA0500.2_rc (MYOG_rc); m=7/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.690954; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1618.1_rc_shift0 (Ptf1a_rc)				; dyads_m3 versus MA1618.1_rc (Ptf1a_rc); m=8/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.690205; dmaaCATCTGtkh-- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; dyads_m3 versus MA0521.1_rc (Tcf12_rc); m=9/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.650243; -cwsCAGCTGYy--- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; dyads_m3 versus MA1467.1 (ATOH1(var.2)); m=10/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.647487; --AACAGCTGTY--- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0
MA0745.2_shift1 (SNAI2)				; dyads_m3 versus MA0745.2 (SNAI2); m=11/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.625494; -aygCACCTGTmry- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)				; dyads_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.621109; -rmaCAGGTGtky-- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0665.1_rc_shift2 (MSC_rc)				; dyads_m3 versus MA0665.1_rc (MSC_rc); m=13/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.613156; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; dyads_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.602962; --avCAGCTGyy--- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA0667.1_shift2 (MYF6)				; dyads_m3 versus MA0667.1 (MYF6); m=15/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.597259; --AACArCTGTY--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; dyads_m3 versus MA0796.1_rc (TGIF1_rc); m=16/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.587159; -TGACAGCTGTCA-- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0
MA0816.1_shift2 (Ascl2)				; dyads_m3 versus MA0816.1 (Ascl2); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.586559; --arCAGCTGyy--- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA0091.1_shift0 (TAL1::TCF3)				; dyads_m3 versus MA0091.1 (TAL1::TCF3); m=18/29; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.585506; mgAmCAKMTGkT--- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0
MA1571.1_rc_shift1 (TGIF2LX_rc)				; dyads_m3 versus MA1571.1_rc (TGIF2LX_rc); m=19/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.585441; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0
MA0691.1_shift2 (TFAP4)				; dyads_m3 versus MA0691.1 (TFAP4); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.581097; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0797.1_rc_shift1 (TGIF2_rc)				; dyads_m3 versus MA0797.1_rc (TGIF2_rc); m=21/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.574553; -TGACAsCTGTCA-- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA1572.1_shift1 (TGIF2LY)				; dyads_m3 versus MA1572.1 (TGIF2LY); m=22/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.573539; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; dyads_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554866; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA1100.2_shift2 (ASCL1)				; dyads_m3 versus MA1100.2 (ASCL1); m=24/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553419; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0820.1_shift2 (FIGLA)				; dyads_m3 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.516132; --wmCACCTGkw--- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0048.2_rc_shift2 (NHLH1_rc)				; dyads_m3 versus MA0048.2_rc (NHLH1_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.502625; --mGCAGCTGCg--- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA1570.1_shift2 (TFAP4(var.2))				; dyads_m3 versus MA1570.1 (TFAP4(var.2)); m=27/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.466888; --ahCAyrTGkt--- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; dyads_m3 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.444323; ------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0
MA0775.1_rc_shift6 (MEIS3_rc)				; dyads_m3 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.429033; ------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0