One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m33/peak-motifs_dyads_m33.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m33/peak-motifs_dyads_m33_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m33_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m33_shift0 (dyads_m33dyads_m33)
; dyads_m33 (dyads_m33dyads_m33); m=0 (reference); ncol1=10; shift=0; ncol=12; ACACTGTAGr-- ; Alignment reference a 54 1 76 0 0 0 0 76 5 21 0 0 c 17 68 0 76 0 0 0 0 3 6 0 0 g 0 6 0 0 1 76 0 0 66 48 0 0 t 5 1 0 0 75 0 76 0 2 1 0 0

MA1580.1_rc_shift0 (ZBTB32_rc)
; dyads_m33 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.752354; wtACTGTACa-- ; cor=; Ncor= a 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 0 0 c 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 0 0 g 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 0 0 t 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0 0 0

MA1542.1_rc_shift1 (OSR1_rc)
; dyads_m33 versus MA1542.1_rc (OSR1_rc); m=2/3; ncol2=10; w=9; offset=1; strand=R; shift=1; score=0.573803; -mACrGTAGCr- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0

MA1585.1_shift2 (ZKSCAN1)
; dyads_m33 versus MA1585.1 (ZKSCAN1); m=3/3; ncol2=10; w=8; offset=2; strand=D; shift=2; score=0.472673; --AyAGTAGGtg ; cor=; Ncor= a 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 c 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 g 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 t 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m33_shift0 (dyads_m33dyads_m33)				; dyads_m33 (dyads_m33dyads_m33); m=0 (reference); ncol1=10; shift=0; ncol=12; ACACTGTAGr-- ; Alignment reference a 54 1 76 0 0 0 0 76 5 21 0 0 c 17 68 0 76 0 0 0 0 3 6 0 0 g 0 6 0 0 1 76 0 0 66 48 0 0 t 5 1 0 0 75 0 76 0 2 1 0 0
MA1580.1_rc_shift0 (ZBTB32_rc)				; dyads_m33 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.752354; wtACTGTACa-- ; cor=; Ncor= a 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 0 0 c 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 0 0 g 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 0 0 t 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0 0 0
MA1542.1_rc_shift1 (OSR1_rc)				; dyads_m33 versus MA1542.1_rc (OSR1_rc); m=2/3; ncol2=10; w=9; offset=1; strand=R; shift=1; score=0.573803; -mACrGTAGCr- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0
MA1585.1_shift2 (ZKSCAN1)				; dyads_m33 versus MA1585.1 (ZKSCAN1); m=3/3; ncol2=10; w=8; offset=2; strand=D; shift=2; score=0.472673; --AyAGTAGGtg ; cor=; Ncor= a 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 c 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 g 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 t 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0