Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m36/peak-motifs_dyads_m36.tf
		file1	1	15	67
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m36 MA0499.2 dyads_m36dyads_m36 MYOD1 0.879 0.762 15 13 13 15 0.8667 0.8667 1.0000 R 1
dyads_m36 MA0832.1 dyads_m36dyads_m36 Tcf21 0.795 0.742 15 14 14 15 0.9333 0.9333 1.0000 D 1
dyads_m36 MA0500.2 dyads_m36dyads_m36 MYOG 0.898 0.719 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m36 MA1641.1 dyads_m36dyads_m36 MYF5 0.895 0.716 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m36 MA1619.1 dyads_m36dyads_m36 Ptf1a(var.2) 0.890 0.712 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m36 MA1485.1 dyads_m36dyads_m36 FERD3L 0.760 0.709 15 14 14 15 0.9333 0.9333 1.0000 R 1
dyads_m36 MA0521.1 dyads_m36dyads_m36 Tcf12 0.952 0.698 15 11 11 15 0.7333 0.7333 1.0000 D 3
dyads_m36 MA1621.1 dyads_m36dyads_m36 Rbpjl 0.735 0.686 15 14 14 15 0.9333 0.9333 1.0000 R 1
dyads_m36 MA0745.2 dyads_m36dyads_m36 SNAI2 0.781 0.676 15 13 13 15 0.8667 0.8667 1.0000 R 1
dyads_m36 MA1618.1 dyads_m36dyads_m36 Ptf1a 0.737 0.639 15 13 13 15 0.8667 0.8667 1.0000 D 2
dyads_m36 MA1123.2 dyads_m36dyads_m36 TWIST1 0.718 0.622 15 13 13 15 0.8667 0.8667 1.0000 R 2
dyads_m36 MA1631.1 dyads_m36dyads_m36 ASCL1(var.2) 0.713 0.618 15 13 13 15 0.8667 0.8667 1.0000 D 2
dyads_m36 MA0830.2 dyads_m36dyads_m36 TCF4 0.707 0.612 15 13 13 15 0.8667 0.8667 1.0000 R 1
dyads_m36 MA1109.1 dyads_m36dyads_m36 NEUROD1 0.703 0.609 15 13 13 15 0.8667 0.8667 1.0000 D 2
dyads_m36 MA1620.1 dyads_m36dyads_m36 Ptf1a(var.3) 0.748 0.598 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m36 MA1467.1 dyads_m36dyads_m36 ATOH1(var.2) 0.894 0.596 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA1472.1 dyads_m36dyads_m36 BHLHA15(var.2) 0.888 0.592 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA1571.1 dyads_m36dyads_m36 TGIF2LX 0.736 0.589 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m36 MA1593.1 dyads_m36dyads_m36 ZNF317 0.736 0.589 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m36 MA1635.1 dyads_m36dyads_m36 BHLHE22(var.2) 0.883 0.588 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m36 MA0796.1 dyads_m36dyads_m36 TGIF1 0.733 0.587 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m36 MA0816.1 dyads_m36dyads_m36 Ascl2 0.878 0.585 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m36 MA1100.2 dyads_m36dyads_m36 ASCL1 0.875 0.583 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA1572.1 dyads_m36dyads_m36 TGIF2LY 0.723 0.579 15 12 12 15 0.8000 0.8000 1.0000 R 2
dyads_m36 MA0797.1 dyads_m36dyads_m36 TGIF2 0.720 0.576 15 12 12 15 0.8000 0.8000 1.0000 D 2
dyads_m36 MA0691.1 dyads_m36dyads_m36 TFAP4 0.833 0.555 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m36 MA0665.1 dyads_m36dyads_m36 MSC 0.827 0.552 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m36 MA0048.2 dyads_m36dyads_m36 NHLH1 0.806 0.537 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA1648.1 dyads_m36dyads_m36 TCF12(var.2) 0.721 0.529 15 11 11 15 0.7333 0.7333 1.0000 D 3
dyads_m36 MA0522.3 dyads_m36dyads_m36 TCF3 0.718 0.526 15 11 11 15 0.7333 0.7333 1.0000 D 3
dyads_m36 MA0667.1 dyads_m36dyads_m36 MYF6 0.784 0.523 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA0820.1 dyads_m36dyads_m36 FIGLA 0.738 0.492 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA1559.1 dyads_m36dyads_m36 SNAI3 0.729 0.486 15 10 10 15 0.6667 0.6667 1.0000 D 3
dyads_m36 MA0100.3 dyads_m36dyads_m36 MYB 0.706 0.471 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA1638.1 dyads_m36dyads_m36 HAND2 0.701 0.467 15 10 10 15 0.6667 0.6667 1.0000 R 3
dyads_m36 MA0774.1 dyads_m36dyads_m36 MEIS2 0.814 0.434 15 8 8 15 0.5333 0.5333 1.0000 D 1
dyads_m36 MA0775.1 dyads_m36dyads_m36 MEIS3 0.776 0.414 15 8 8 15 0.5333 0.5333 1.0000 D 1 
 Host name	pedagogix
 Job started	2020-04-13.205249
 Job done	2020-04-13.205325
 Seconds	4.51
	user	4.51
	system	0.52
	cuser	27.57
;	csystem	1.85