One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m38/peak-motifs_dyads_m38.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m38/peak-motifs_dyads_m38_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: dyads_m38_shift3 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m38_shift3 (dyads_m38dyads_m38)
; dyads_m38 (dyads_m38dyads_m38); m=0 (reference); ncol1=12; shift=3; ncol=17; ---twTTAAATAAww-- ; Alignment reference a 0 0 0 6 9 3 0 27 27 22 3 26 27 12 8 0 0 c 0 0 0 7 5 1 0 0 1 1 0 0 0 3 6 0 0 g 0 0 0 5 3 2 1 0 1 2 0 1 1 5 6 0 0 t 0 0 0 11 12 23 28 2 0 4 26 2 1 9 9 0 0

MA0639.1_shift3 (DBP)
; dyads_m38 versus MA0639.1 (DBP); m=1/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.714164; ---krTTAYRTAAya-- ; cor=; Ncor= a 0 0 0 1552.0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 2574.0 0 0 c 0 0 0 1714.0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 1657.0 0 0 g 0 0 0 1903.0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 1747.0 0 0 t 0 0 0 1930.0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0 1122.0 0 0

MA0843.1_shift3 (TEF)
; dyads_m38 versus MA0843.1 (TEF); m=2/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.707679; ---yrTTACrTAAym-- ; cor=; Ncor= a 0 0 0 541.0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 1383.0 0 0 c 0 0 0 1053.0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 1141.0 0 0 g 0 0 0 853.0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 554.0 0 0 t 0 0 0 1154.0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0 522.0 0 0

MA0621.1_rc_shift4 (mix-a_rc)
; dyads_m38 versus MA0621.1_rc (mix-a_rc); m=3/23; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.70679; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0

MA0135.1_shift2 (Lhx3)
; dyads_m38 versus MA0135.1 (Lhx3); m=4/23; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.678274; --wAATTAATTAwyy-- ; cor=; Ncor= a 0 0 9.0 16.0 19.0 0.0 0.0 19.0 20.0 2.0 0.0 16.0 9.0 2.0 2.0 0 0 c 0 0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 8.0 9.0 0 0 g 0 0 3.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 3.0 0 0 t 0 0 8.0 0.0 1.0 20.0 20.0 1.0 0.0 16.0 19.0 3.0 8.0 10.0 6.0 0 0

MA0025.2_rc_shift2 (NFIL3_rc)
; dyads_m38 versus MA0025.2_rc (NFIL3_rc); m=5/23; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.666504; --wtaTTrCATAAyw-- ; cor=; Ncor= a 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 c 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 g 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 t 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0

MA0703.2_rc_shift5 (LMX1B_rc)
; dyads_m38 versus MA0703.2_rc (LMX1B_rc); m=6/23; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.649413; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0

MA1463.1_shift4 (ARGFX)
; dyads_m38 versus MA1463.1 (ARGFX); m=7/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.609615; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0

MA0628.1_shift4 (POU6F1)
; dyads_m38 versus MA0628.1 (POU6F1); m=8/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.608898; ----ayTAATTArt--- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0

MA1487.1_shift3 (FOXE1)
; dyads_m38 versus MA1487.1 (FOXE1); m=9/23; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.590756; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0

MA0707.1_shift4 (MNX1)
; dyads_m38 versus MA0707.1 (MNX1); m=10/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.589425; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0

MA0601.1_shift2 (Arid3b)
; dyads_m38 versus MA0601.1 (Arid3b); m=11/23; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.568551; --awaTTAATwaa---- ; cor=; Ncor= a 0 0 468.0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 262.0 490.0 351.0 0 0 0 0 c 0 0 177.0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 168.0 170.0 216.0 0 0 0 0 g 0 0 177.0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 73.0 170.0 216.0 0 0 0 0 t 0 0 177.0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0 498.0 170.0 216.0 0 0 0 0

MA0853.1_shift1 (Alx4)
; dyads_m38 versus MA0853.1 (Alx4); m=12/23; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.55955; -cgcryTAATTArthas ; cor=; Ncor= a 0 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 17.0 29.0 36.0 23.0 c 0 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 23.0 28.0 23.0 29.0 g 0 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 18.0 13.0 19.0 25.0 t 0 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 42.0 30.0 22.0 23.0

MA0619.1_shift3 (LIN54)
; dyads_m38 versus MA0619.1 (LIN54); m=13/23; ncol2=9; w=9; offset=0; strand=D; shift=3; score=0.558337; ---wTTTrAATt----- ; cor=; Ncor= a 0 0 0 411.0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 243.0 0 0 0 0 0 c 0 0 0 91.0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 249.0 0 0 0 0 0 g 0 0 0 212.0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 159.0 0 0 0 0 0 t 0 0 0 285.0 999.0 999.0 788.0 0.0 0.0 0.0 685.0 350.0 0 0 0 0 0

MA0847.2_shift4 (FOXD2)
; dyads_m38 versus MA0847.2 (FOXD2); m=14/23; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.551184; ----sywAwRTAAAYAw ; cor=; Ncor= a 0 0 0 0 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 c 0 0 0 0 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 g 0 0 0 0 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 t 0 0 0 0 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0

MA0854.1_rc_shift0 (Alx1_rc)
; dyads_m38 versus MA0854.1_rc (Alx1_rc); m=15/23; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.540145; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0

MA0702.2_rc_shift5 (LMX1A_rc)
; dyads_m38 versus MA0702.2_rc (LMX1A_rc); m=16/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.536035; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0

MA0874.1_shift0 (Arx)
; dyads_m38 versus MA0874.1 (Arx); m=17/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.529196; gtscryTAATTArtksw ; cor=; Ncor= a 24.0 13.0 16.0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 16.0 18.0 9.0 53.0 c 22.0 16.0 37.0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 16.0 11.0 36.0 10.0 g 40.0 19.0 29.0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 14.0 44.0 37.0 7.0 t 14.0 52.0 19.0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 54.0 27.0 18.0 30.0

MA0704.1_rc_shift5 (Lhx4_rc)
; dyads_m38 versus MA0704.1_rc (Lhx4_rc); m=18/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.505489; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 275.0 135.0 2896.0 2896.0 155.0 255.0 2896.0 1161.0 0 0 0 0 c 0 0 0 0 0 857.0 316.0 57.0 0.0 0.0 309.0 0.0 495.0 0 0 0 0 g 0 0 0 0 0 449.0 39.0 446.0 0.0 0.0 428.0 912.0 817.0 0 0 0 0 t 0 0 0 0 0 1314.0 2896.0 0.0 0.0 2896.0 2896.0 217.0 422.0 0 0 0 0

MA0851.1_shift0 (Foxj3)
; dyads_m38 versus MA0851.1 (Foxj3); m=19/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.50405; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0

MA0674.1_rc_shift5 (NKX6-1_rc)
; dyads_m38 versus MA0674.1_rc (NKX6-1_rc); m=20/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.479272; -----tTAATkRs---- ; cor=; Ncor= a 0 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 381.0 0 0 0 0 c 0 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 734.0 0 0 0 0 g 0 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 695.0 0 0 0 0 t 0 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 403.0 0 0 0 0

MA0715.1_rc_shift6 (PROP1_rc)
; dyads_m38 versus MA0715.1_rc (PROP1_rc); m=21/23; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.451684; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0

MA0151.1_shift4 (Arid3a)
; dyads_m38 versus MA0151.1 (Arid3a); m=22/23; ncol2=6; w=6; offset=1; strand=D; shift=4; score=0.425255; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0

MA0033.2_shift5 (FOXL1)
; dyads_m38 versus MA0033.2 (FOXL1); m=23/23; ncol2=7; w=7; offset=2; strand=D; shift=5; score=0.423816; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m38_shift3 (dyads_m38dyads_m38)				; dyads_m38 (dyads_m38dyads_m38); m=0 (reference); ncol1=12; shift=3; ncol=17; ---twTTAAATAAww-- ; Alignment reference a 0 0 0 6 9 3 0 27 27 22 3 26 27 12 8 0 0 c 0 0 0 7 5 1 0 0 1 1 0 0 0 3 6 0 0 g 0 0 0 5 3 2 1 0 1 2 0 1 1 5 6 0 0 t 0 0 0 11 12 23 28 2 0 4 26 2 1 9 9 0 0
MA0639.1_shift3 (DBP)				; dyads_m38 versus MA0639.1 (DBP); m=1/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.714164; ---krTTAYRTAAya-- ; cor=; Ncor= a 0 0 0 1552.0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 2574.0 0 0 c 0 0 0 1714.0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 1657.0 0 0 g 0 0 0 1903.0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 1747.0 0 0 t 0 0 0 1930.0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0 1122.0 0 0
MA0843.1_shift3 (TEF)				; dyads_m38 versus MA0843.1 (TEF); m=2/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.707679; ---yrTTACrTAAym-- ; cor=; Ncor= a 0 0 0 541.0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 1383.0 0 0 c 0 0 0 1053.0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 1141.0 0 0 g 0 0 0 853.0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 554.0 0 0 t 0 0 0 1154.0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0 522.0 0 0
MA0621.1_rc_shift4 (mix-a_rc)				; dyads_m38 versus MA0621.1_rc (mix-a_rc); m=3/23; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.70679; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0
MA0135.1_shift2 (Lhx3)				; dyads_m38 versus MA0135.1 (Lhx3); m=4/23; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.678274; --wAATTAATTAwyy-- ; cor=; Ncor= a 0 0 9.0 16.0 19.0 0.0 0.0 19.0 20.0 2.0 0.0 16.0 9.0 2.0 2.0 0 0 c 0 0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 8.0 9.0 0 0 g 0 0 3.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 3.0 0 0 t 0 0 8.0 0.0 1.0 20.0 20.0 1.0 0.0 16.0 19.0 3.0 8.0 10.0 6.0 0 0
MA0025.2_rc_shift2 (NFIL3_rc)				; dyads_m38 versus MA0025.2_rc (NFIL3_rc); m=5/23; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.666504; --wtaTTrCATAAyw-- ; cor=; Ncor= a 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 c 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 g 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 t 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0
MA0703.2_rc_shift5 (LMX1B_rc)				; dyads_m38 versus MA0703.2_rc (LMX1B_rc); m=6/23; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.649413; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0
MA1463.1_shift4 (ARGFX)				; dyads_m38 versus MA1463.1 (ARGFX); m=7/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.609615; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0
MA0628.1_shift4 (POU6F1)				; dyads_m38 versus MA0628.1 (POU6F1); m=8/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.608898; ----ayTAATTArt--- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0
MA1487.1_shift3 (FOXE1)				; dyads_m38 versus MA1487.1 (FOXE1); m=9/23; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.590756; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0
MA0707.1_shift4 (MNX1)				; dyads_m38 versus MA0707.1 (MNX1); m=10/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.589425; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0
MA0601.1_shift2 (Arid3b)				; dyads_m38 versus MA0601.1 (Arid3b); m=11/23; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.568551; --awaTTAATwaa---- ; cor=; Ncor= a 0 0 468.0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 262.0 490.0 351.0 0 0 0 0 c 0 0 177.0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 168.0 170.0 216.0 0 0 0 0 g 0 0 177.0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 73.0 170.0 216.0 0 0 0 0 t 0 0 177.0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0 498.0 170.0 216.0 0 0 0 0
MA0853.1_shift1 (Alx4)				; dyads_m38 versus MA0853.1 (Alx4); m=12/23; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.55955; -cgcryTAATTArthas ; cor=; Ncor= a 0 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 17.0 29.0 36.0 23.0 c 0 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 23.0 28.0 23.0 29.0 g 0 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 18.0 13.0 19.0 25.0 t 0 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 42.0 30.0 22.0 23.0
MA0619.1_shift3 (LIN54)				; dyads_m38 versus MA0619.1 (LIN54); m=13/23; ncol2=9; w=9; offset=0; strand=D; shift=3; score=0.558337; ---wTTTrAATt----- ; cor=; Ncor= a 0 0 0 411.0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 243.0 0 0 0 0 0 c 0 0 0 91.0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 249.0 0 0 0 0 0 g 0 0 0 212.0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 159.0 0 0 0 0 0 t 0 0 0 285.0 999.0 999.0 788.0 0.0 0.0 0.0 685.0 350.0 0 0 0 0 0
MA0847.2_shift4 (FOXD2)				; dyads_m38 versus MA0847.2 (FOXD2); m=14/23; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.551184; ----sywAwRTAAAYAw ; cor=; Ncor= a 0 0 0 0 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 c 0 0 0 0 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 g 0 0 0 0 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 t 0 0 0 0 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0
MA0854.1_rc_shift0 (Alx1_rc)				; dyads_m38 versus MA0854.1_rc (Alx1_rc); m=15/23; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.540145; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0
MA0702.2_rc_shift5 (LMX1A_rc)				; dyads_m38 versus MA0702.2_rc (LMX1A_rc); m=16/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.536035; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0
MA0874.1_shift0 (Arx)				; dyads_m38 versus MA0874.1 (Arx); m=17/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.529196; gtscryTAATTArtksw ; cor=; Ncor= a 24.0 13.0 16.0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 16.0 18.0 9.0 53.0 c 22.0 16.0 37.0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 16.0 11.0 36.0 10.0 g 40.0 19.0 29.0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 14.0 44.0 37.0 7.0 t 14.0 52.0 19.0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 54.0 27.0 18.0 30.0
MA0704.1_rc_shift5 (Lhx4_rc)				; dyads_m38 versus MA0704.1_rc (Lhx4_rc); m=18/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.505489; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 275.0 135.0 2896.0 2896.0 155.0 255.0 2896.0 1161.0 0 0 0 0 c 0 0 0 0 0 857.0 316.0 57.0 0.0 0.0 309.0 0.0 495.0 0 0 0 0 g 0 0 0 0 0 449.0 39.0 446.0 0.0 0.0 428.0 912.0 817.0 0 0 0 0 t 0 0 0 0 0 1314.0 2896.0 0.0 0.0 2896.0 2896.0 217.0 422.0 0 0 0 0
MA0851.1_shift0 (Foxj3)				; dyads_m38 versus MA0851.1 (Foxj3); m=19/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.50405; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0
MA0674.1_rc_shift5 (NKX6-1_rc)				; dyads_m38 versus MA0674.1_rc (NKX6-1_rc); m=20/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.479272; -----tTAATkRs---- ; cor=; Ncor= a 0 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 381.0 0 0 0 0 c 0 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 734.0 0 0 0 0 g 0 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 695.0 0 0 0 0 t 0 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 403.0 0 0 0 0
MA0715.1_rc_shift6 (PROP1_rc)				; dyads_m38 versus MA0715.1_rc (PROP1_rc); m=21/23; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.451684; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0
MA0151.1_shift4 (Arid3a)				; dyads_m38 versus MA0151.1 (Arid3a); m=22/23; ncol2=6; w=6; offset=1; strand=D; shift=4; score=0.425255; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0
MA0033.2_shift5 (FOXL1)				; dyads_m38 versus MA0033.2 (FOXL1); m=23/23; ncol2=7; w=7; offset=2; strand=D; shift=5; score=0.423816; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0