One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m39/peak-motifs_dyads_m39.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m39/peak-motifs_dyads_m39_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m39_shift5 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m39_shift5 (dyads_m39dyads_m39) |
 |
|
|
; dyads_m39 (dyads_m39dyads_m39); m=0 (reference); ncol1=10; shift=5; ncol=15; -----GwGAAATAyr
; Alignment reference
a 0 0 0 0 0 5 25 0 56 56 56 0 56 5 21
c 0 0 0 0 0 7 1 0 0 0 0 0 0 20 6
g 0 0 0 0 0 40 3 56 0 0 0 0 0 5 23
t 0 0 0 0 0 4 27 0 0 0 0 56 0 26 6
|
| MA0102.4_rc_shift0 (CEBPA_rc) |
 |
|
|
; dyads_m39 versus MA0102.4_rc (CEBPA_rc); m=1/1; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.442908; wwaTTGTGCAATmw-
; cor=; Ncor=
a 24153.0 20623.0 50992.0 1411.0 1092.0 9787.0 6308.0 2053.0 10928.0 75354.0 76586.0 4573.0 28452.0 24323.0 0
c 16045.0 12932.0 7312.0 1381.0 340.0 1583.0 6751.0 678.0 57887.0 2365.0 722.0 12772.0 20062.0 15847.0 0
g 17147.0 17396.0 16193.0 1034.0 5655.0 61538.0 3535.0 75124.0 936.0 282.0 826.0 7284.0 12801.0 14823.0 0
t 21658.0 28052.0 4506.0 75177.0 71916.0 6095.0 62409.0 1148.0 9252.0 1002.0 869.0 54374.0 17688.0 24010.0 0
|