One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: dyads_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m4_shift0 (dyads_m4dyads_m4) |
 |
|
|
; dyads_m4 (dyads_m4dyads_m4); m=0 (reference); ncol1=21; shift=0; ncol=21; gCkRRAAAACTGAAAATCAyR
; Alignment reference
a 3 1 2 11 5 16 16 14 16 0 3 0 16 16 16 16 1 0 14 0 4
c 1 11 0 0 0 0 0 2 0 15 0 0 0 0 0 0 0 13 0 9 0
g 9 3 9 5 11 0 0 0 0 1 0 16 0 0 0 0 0 3 2 3 12
t 3 1 5 0 0 0 0 0 0 0 13 0 0 0 0 0 15 0 0 4 0
|
| MA0517.1_rc_shift4 (STAT1::STAT2_rc) |
 |
|
|
; dyads_m4 versus MA0517.1_rc (STAT1::STAT2_rc); m=1/2; ncol2=15; w=15; offset=4; strand=R; shift=4; score=0.504326; ----rGRAAmyGAAACTra--
; cor=; Ncor=
a 0 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 0 0
c 0 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 0 0
g 0 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 0 0
t 0 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0 0 0
|
| MA1623.1_shift4 (Stat2) |
 |
|
|
; dyads_m4 versus MA1623.1 (Stat2); m=2/2; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.477567; ----rgAAACAGAAAsw----
; cor=; Ncor=
a 0 0 0 0 1605.0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 740.0 1262.0 0 0 0 0
c 0 0 0 0 538.0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 1502.0 758.0 0 0 0 0
g 0 0 0 0 1125.0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 1180.0 591.0 0 0 0 0
t 0 0 0 0 691.0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 537.0 1348.0 0 0 0 0
|