Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/dyads_m5/peak-motifs_dyads_m5.tf
		file1	1	14	57
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
dyads_m5 MA0499.2 dyads_m5dyads_m5 MYOD1 0.840 0.780 14 13 13 14 0.9286 0.9286 1.0000 R 1
dyads_m5 MA1641.1 dyads_m5dyads_m5 MYF5 0.895 0.767 14 12 12 14 0.8571 0.8571 1.0000 D 2
dyads_m5 MA1619.1 dyads_m5dyads_m5 Ptf1a(var.2) 0.891 0.764 14 12 12 14 0.8571 0.8571 1.0000 D 2
dyads_m5 MA0500.2 dyads_m5dyads_m5 MYOG 0.863 0.740 14 12 12 14 0.8571 0.8571 1.0000 R 2
dyads_m5 MA0521.1 dyads_m5dyads_m5 Tcf12 0.933 0.733 14 11 11 14 0.7857 0.7857 1.0000 D 3
dyads_m5 MA0745.2 dyads_m5dyads_m5 SNAI2 0.750 0.697 14 13 13 14 0.9286 0.9286 1.0000 R 1
dyads_m5 MA1485.1 dyads_m5dyads_m5 FERD3L 0.792 0.686 14 14 13 15 0.8667 0.9286 0.9286 R 1
dyads_m5 MA1593.1 dyads_m5dyads_m5 ZNF317 0.799 0.685 14 12 12 14 0.8571 0.8571 1.0000 D 2
dyads_m5 MA0832.1 dyads_m5dyads_m5 Tcf21 0.785 0.680 14 14 13 15 0.8667 0.9286 0.9286 D 1
dyads_m5 MA1618.1 dyads_m5dyads_m5 Ptf1a 0.716 0.665 14 13 13 14 0.9286 0.9286 1.0000 R 1
dyads_m5 MA1571.1 dyads_m5dyads_m5 TGIF2LX 0.770 0.660 14 12 12 14 0.8571 0.8571 1.0000 R 2
dyads_m5 MA0796.1 dyads_m5dyads_m5 TGIF1 0.765 0.655 14 12 12 14 0.8571 0.8571 1.0000 D 2
dyads_m5 MA1572.1 dyads_m5dyads_m5 TGIF2LY 0.758 0.650 14 12 12 14 0.8571 0.8571 1.0000 R 2
dyads_m5 MA0797.1 dyads_m5dyads_m5 TGIF2 0.750 0.643 14 12 12 14 0.8571 0.8571 1.0000 D 2
dyads_m5 MA1620.1 dyads_m5dyads_m5 Ptf1a(var.3) 0.744 0.637 14 12 12 14 0.8571 0.8571 1.0000 R 2
dyads_m5 MA1621.1 dyads_m5dyads_m5 Rbpjl 0.734 0.636 14 14 13 15 0.8667 0.9286 0.9286 R 1
dyads_m5 MA1467.1 dyads_m5dyads_m5 ATOH1(var.2) 0.878 0.627 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA1635.1 dyads_m5dyads_m5 BHLHE22(var.2) 0.864 0.617 14 10 10 14 0.7143 0.7143 1.0000 D 3
dyads_m5 MA1472.1 dyads_m5dyads_m5 BHLHA15(var.2) 0.863 0.617 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA0691.1 dyads_m5dyads_m5 TFAP4 0.847 0.605 14 10 10 14 0.7143 0.7143 1.0000 D 3
dyads_m5 MA0783.1 dyads_m5dyads_m5 PKNOX2 0.705 0.604 14 12 12 14 0.8571 0.8571 1.0000 D 2
dyads_m5 MA1100.2 dyads_m5dyads_m5 ASCL1 0.826 0.590 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA0816.1 dyads_m5dyads_m5 Ascl2 0.819 0.585 14 10 10 14 0.7143 0.7143 1.0000 D 3
dyads_m5 MA0665.1 dyads_m5dyads_m5 MSC 0.809 0.578 14 10 10 14 0.7143 0.7143 1.0000 D 3
dyads_m5 MA1123.2 dyads_m5dyads_m5 TWIST1 0.714 0.571 14 13 12 15 0.8000 0.8571 0.9231 R 2
dyads_m5 MA1109.1 dyads_m5dyads_m5 NEUROD1 0.709 0.567 14 13 12 15 0.8000 0.8571 0.9231 D 2
dyads_m5 MA0667.1 dyads_m5dyads_m5 MYF6 0.769 0.549 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA0048.2 dyads_m5dyads_m5 NHLH1 0.760 0.543 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA0820.1 dyads_m5dyads_m5 FIGLA 0.735 0.525 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA0100.3 dyads_m5dyads_m5 MYB 0.707 0.505 14 10 10 14 0.7143 0.7143 1.0000 R 3
dyads_m5 MA0774.1 dyads_m5dyads_m5 MEIS2 0.815 0.466 14 8 8 14 0.5714 0.5714 1.0000 D 1
dyads_m5 MA0775.1 dyads_m5dyads_m5 MEIS3 0.770 0.440 14 8 8 14 0.5714 0.5714 1.0000 D 1
dyads_m5 MA0498.2 dyads_m5dyads_m5 MEIS1 0.832 0.416 14 7 7 14 0.5000 0.5000 1.0000 D 1 
 Host name	pedagogix
 Job started	2020-04-13.204806
 Job done	2020-04-13.204836
 Seconds	3.8
	user	3.8
	system	0.5
	cuser	22.67
;	csystem	1.61