Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
		file1	1	14	35
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m1 MA1641.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MYF5 0.921 0.789 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA0796.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 TGIF1 0.908 0.778 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA1619.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Ptf1a(var.2) 0.907 0.777 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA1571.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 TGIF2LX 0.907 0.777 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA1572.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 TGIF2LY 0.895 0.767 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m1 MA0797.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 TGIF2 0.890 0.763 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m1 MA0832.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Tcf21 0.763 0.763 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 MA0500.2 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MYOG 0.857 0.735 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA1621.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Rbpjl 0.732 0.732 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 MA0783.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 PKNOX2 0.847 0.726 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m1 MA0499.2 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MYOD1 0.748 0.695 14 13 13 14 0.9286 0.9286 1.0000 R 0
oligos_6nt_mkv2_m1 MA1618.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Ptf1a 0.736 0.683 14 13 13 14 0.9286 0.9286 1.0000 R 0
oligos_6nt_mkv2_m1 MA0521.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Tcf12 0.866 0.681 14 11 11 14 0.7857 0.7857 1.0000 D 2
oligos_6nt_mkv2_m1 MA1467.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 ATOH1(var.2) 0.931 0.665 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA1620.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Ptf1a(var.3) 0.768 0.659 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA1472.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 BHLHA15(var.2) 0.889 0.635 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA1635.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 BHLHE22(var.2) 0.875 0.625 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA1593.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 ZNF317 0.722 0.619 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m1 MA1100.2 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 ASCL1 0.846 0.604 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA0665.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MSC 0.843 0.602 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv2_m1 MA0691.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 TFAP4 0.841 0.601 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA0816.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 Ascl2 0.830 0.593 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA0667.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MYF6 0.812 0.580 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA0048.2 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 NHLH1 0.744 0.532 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv2_m1 MA0820.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 FIGLA 0.737 0.526 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA1638.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 HAND2 0.701 0.500 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m1 MA0774.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MEIS2 0.807 0.461 14 8 8 14 0.5714 0.5714 1.0000 R 6
oligos_6nt_mkv2_m1 MA0775.1 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MEIS3 0.738 0.421 14 8 8 14 0.5714 0.5714 1.0000 R 6
oligos_6nt_mkv2_m1 MA0498.2 oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1 MEIS1 0.816 0.408 14 7 7 14 0.5000 0.5000 1.0000 R 7 
 Host name	pedagogix
 Job started	2020-04-13.203317
 Job done	2020-04-13.203340
 Seconds	2.97
	user	2.97
	system	0.31
	cuser	17.74
;	csystem	1.38