Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
		file1	1	14	36
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m3 MA0832.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Tcf21 0.896 0.896 14 14 14 14 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m3 MA1641.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MYF5 0.958 0.821 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m3 MA1619.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Ptf1a(var.2) 0.947 0.812 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m3 MA1485.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 FERD3L 0.805 0.805 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 MA1621.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Rbpjl 0.804 0.804 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 MA0500.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MYOG 0.905 0.776 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m3 MA0499.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MYOD1 0.833 0.774 14 13 13 14 0.9286 0.9286 1.0000 D 1
oligos_6nt_mkv2_m3 MA1618.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Ptf1a 0.812 0.754 14 13 13 14 0.9286 0.9286 1.0000 R 0
oligos_6nt_mkv2_m3 MA0521.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Tcf12 0.924 0.726 14 11 11 14 0.7857 0.7857 1.0000 R 1
oligos_6nt_mkv2_m3 MA1467.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 ATOH1(var.2) 0.981 0.701 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA0745.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 SNAI2 0.753 0.699 14 13 13 14 0.9286 0.9286 1.0000 D 1
oligos_6nt_mkv2_m3 MA1620.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Ptf1a(var.3) 0.814 0.698 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m3 MA0796.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TGIF1 0.789 0.676 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m3 MA1571.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TGIF2LX 0.787 0.674 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m3 MA1123.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TWIST1 0.718 0.666 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_6nt_mkv2_m3 MA1472.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 BHLHA15(var.2) 0.931 0.665 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA0665.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MSC 0.929 0.663 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv2_m3 MA1572.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TGIF2LY 0.771 0.661 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m3 MA0797.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TGIF2 0.771 0.661 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_6nt_mkv2_m3 MA0667.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MYF6 0.900 0.643 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA0816.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 Ascl2 0.895 0.639 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA0691.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TFAP4 0.894 0.639 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA1635.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 BHLHE22(var.2) 0.883 0.630 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv2_m3 MA0783.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 PKNOX2 0.731 0.627 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m3 MA0091.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TAL1::TCF3 0.731 0.626 14 12 12 14 0.8571 0.8571 1.0000 D 0
oligos_6nt_mkv2_m3 MA1100.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 ASCL1 0.866 0.619 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA0048.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 NHLH1 0.795 0.568 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA0820.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 FIGLA 0.792 0.566 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA1638.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 HAND2 0.721 0.515 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA1570.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 TFAP4(var.2) 0.709 0.507 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA1559.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 SNAI3 0.708 0.505 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv2_m3 MA0100.3 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MYB 0.704 0.503 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv2_m3 MA1558.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 SNAI1 0.701 0.501 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv2_m3 MA0774.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MEIS2 0.805 0.460 14 8 8 14 0.5714 0.5714 1.0000 R 6
oligos_6nt_mkv2_m3 MA0775.1 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MEIS3 0.766 0.438 14 8 8 14 0.5714 0.5714 1.0000 R 6
oligos_6nt_mkv2_m3 MA0498.2 oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3 MEIS1 0.813 0.407 14 7 7 14 0.5000 0.5000 1.0000 R 7 
 Host name	pedagogix
 Job started	2020-04-13.203412
 Job done	2020-04-13.203442
 Seconds	4.05
	user	4.05
	system	0.47
	cuser	23.53
;	csystem	1.61