One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift5 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift5 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4); m=0 (reference); ncol1=10; shift=5; ncol=16; -----dsAGGCAGrg- ; Alignment reference a 0 0 0 0 0 17 7 59 0 0 0 59 0 18 13 0 c 0 0 0 0 0 10 15 0 0 0 59 0 0 12 6 0 g 0 0 0 0 0 16 33 0 59 59 0 0 59 23 32 0 t 0 0 0 0 0 16 4 0 0 0 0 0 0 6 8 0

MA0764.2_shift5 (ETV4)
; oligos_6nt_mkv2_m4 versus MA0764.2 (ETV4); m=1/7; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.748447; -----rcAGGAAGyr- ; cor=; Ncor= a 0 0 0 0 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 c 0 0 0 0 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 g 0 0 0 0 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 t 0 0 0 0 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0

MA1596.1_rc_shift1 (ZNF460_rc)
; oligos_6nt_mkv2_m4 versus MA1596.1_rc (ZNF460_rc); m=2/7; ncol2=16; w=10; offset=-4; strand=R; shift=1; score=0.467675; -CyyGGGAGGCkGAGG ; cor=; Ncor= a 0 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 c 0 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 g 0 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 t 0 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0

MA1631.1_rc_shift6 (ASCL1(var.2)_rc)
; oligos_6nt_mkv2_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/7; ncol2=13; w=9; offset=1; strand=R; shift=6; score=0.456198; ------gsrGCAGGTG ; cor=; Ncor= a 0 0 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 c 0 0 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 g 0 0 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 t 0 0 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0

MA0003.4_rc_shift0 (TFAP2A_rc)
; oligos_6nt_mkv2_m4 versus MA0003.4_rc (TFAP2A_rc); m=4/7; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.454783; tksCCTGAGGcarb-- ; cor=; Ncor= a 3008.0 3914.0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 6701.0 5211.0 3469.0 0 0 c 3841.0 3051.0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 3791.0 3374.0 4072.0 0 0 g 3915.0 4783.0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 2634.0 4620.0 4092.0 0 0 t 5204.0 4220.0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 2842.0 2763.0 4335.0 0 0

MA0812.1_shift1 (TFAP2B(var.2))
; oligos_6nt_mkv2_m4 versus MA0812.1 (TFAP2B(var.2)); m=5/7; ncol2=11; w=7; offset=-4; strand=D; shift=1; score=0.43829; -mGCCysAGGCd---- ; cor=; Ncor= a 0 1784.0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 1822.0 0 0 0 0 c 0 1412.0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 371.0 0 0 0 0 g 0 232.0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 1149.0 0 0 0 0 t 0 1121.0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 1207.0 0 0 0 0

MA0814.2_shift0 (TFAP2C(var.2))
; oligos_6nt_mkv2_m4 versus MA0814.2 (TFAP2C(var.2)); m=6/7; ncol2=14; w=9; offset=-5; strand=D; shift=0; score=0.424619; bggCCTGAGGCgvs-- ; cor=; Ncor= a 11314.0 13628.0 3782.0 736.0 482.0 1367.0 1323.0 51058.0 874.0 714.0 4313.0 10186.0 16182.0 12086.0 0 0 c 15858.0 12565.0 14686.0 57108.0 57617.0 5539.0 3036.0 4733.0 1486.0 1575.0 42758.0 12553.0 15252.0 16468.0 0 0 g 17038.0 20129.0 37729.0 2273.0 2060.0 4910.0 55222.0 3944.0 57995.0 57916.0 9867.0 27373.0 18680.0 17367.0 0 0 t 16609.0 14497.0 4622.0 702.0 660.0 49003.0 1238.0 1084.0 464.0 614.0 3881.0 10707.0 10705.0 14898.0 0 0

MA1569.1_rc_shift1 (TFAP2E_rc)
; oligos_6nt_mkv2_m4 versus MA1569.1_rc (TFAP2E_rc); m=7/7; ncol2=11; w=7; offset=-4; strand=R; shift=1; score=0.401558; -ysCCysrGGsr---- ; cor=; Ncor= a 0 2729.0 0.0 0.0 0.0 0.0 1316.0 7858.0 0.0 0.0 0.0 4957.0 0 0 0 0 c 0 5310.0 6818.0 14449.0 14449.0 4463.0 5766.0 2053.0 0.0 0.0 14449.0 1434.0 0 0 0 0 g 0 1506.0 14449.0 0.0 0.0 2419.0 5928.0 4768.0 14449.0 14449.0 6924.0 5504.0 0 0 0 0 t 0 4904.0 0.0 0.0 0.0 7716.0 1440.0 0.0 0.0 0.0 0.0 2554.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift5 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4); m=0 (reference); ncol1=10; shift=5; ncol=16; -----dsAGGCAGrg- ; Alignment reference a 0 0 0 0 0 17 7 59 0 0 0 59 0 18 13 0 c 0 0 0 0 0 10 15 0 0 0 59 0 0 12 6 0 g 0 0 0 0 0 16 33 0 59 59 0 0 59 23 32 0 t 0 0 0 0 0 16 4 0 0 0 0 0 0 6 8 0
MA0764.2_shift5 (ETV4)				; oligos_6nt_mkv2_m4 versus MA0764.2 (ETV4); m=1/7; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.748447; -----rcAGGAAGyr- ; cor=; Ncor= a 0 0 0 0 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 c 0 0 0 0 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 g 0 0 0 0 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 t 0 0 0 0 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0
MA1596.1_rc_shift1 (ZNF460_rc)				; oligos_6nt_mkv2_m4 versus MA1596.1_rc (ZNF460_rc); m=2/7; ncol2=16; w=10; offset=-4; strand=R; shift=1; score=0.467675; -CyyGGGAGGCkGAGG ; cor=; Ncor= a 0 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 c 0 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 g 0 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 t 0 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0
MA1631.1_rc_shift6 (ASCL1(var.2)_rc)				; oligos_6nt_mkv2_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/7; ncol2=13; w=9; offset=1; strand=R; shift=6; score=0.456198; ------gsrGCAGGTG ; cor=; Ncor= a 0 0 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 c 0 0 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 g 0 0 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 t 0 0 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0
MA0003.4_rc_shift0 (TFAP2A_rc)				; oligos_6nt_mkv2_m4 versus MA0003.4_rc (TFAP2A_rc); m=4/7; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.454783; tksCCTGAGGcarb-- ; cor=; Ncor= a 3008.0 3914.0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 6701.0 5211.0 3469.0 0 0 c 3841.0 3051.0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 3791.0 3374.0 4072.0 0 0 g 3915.0 4783.0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 2634.0 4620.0 4092.0 0 0 t 5204.0 4220.0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 2842.0 2763.0 4335.0 0 0
MA0812.1_shift1 (TFAP2B(var.2))				; oligos_6nt_mkv2_m4 versus MA0812.1 (TFAP2B(var.2)); m=5/7; ncol2=11; w=7; offset=-4; strand=D; shift=1; score=0.43829; -mGCCysAGGCd---- ; cor=; Ncor= a 0 1784.0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 1822.0 0 0 0 0 c 0 1412.0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 371.0 0 0 0 0 g 0 232.0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 1149.0 0 0 0 0 t 0 1121.0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 1207.0 0 0 0 0
MA0814.2_shift0 (TFAP2C(var.2))				; oligos_6nt_mkv2_m4 versus MA0814.2 (TFAP2C(var.2)); m=6/7; ncol2=14; w=9; offset=-5; strand=D; shift=0; score=0.424619; bggCCTGAGGCgvs-- ; cor=; Ncor= a 11314.0 13628.0 3782.0 736.0 482.0 1367.0 1323.0 51058.0 874.0 714.0 4313.0 10186.0 16182.0 12086.0 0 0 c 15858.0 12565.0 14686.0 57108.0 57617.0 5539.0 3036.0 4733.0 1486.0 1575.0 42758.0 12553.0 15252.0 16468.0 0 0 g 17038.0 20129.0 37729.0 2273.0 2060.0 4910.0 55222.0 3944.0 57995.0 57916.0 9867.0 27373.0 18680.0 17367.0 0 0 t 16609.0 14497.0 4622.0 702.0 660.0 49003.0 1238.0 1084.0 464.0 614.0 3881.0 10707.0 10705.0 14898.0 0 0
MA1569.1_rc_shift1 (TFAP2E_rc)				; oligos_6nt_mkv2_m4 versus MA1569.1_rc (TFAP2E_rc); m=7/7; ncol2=11; w=7; offset=-4; strand=R; shift=1; score=0.401558; -ysCCysrGGsr---- ; cor=; Ncor= a 0 2729.0 0.0 0.0 0.0 0.0 1316.0 7858.0 0.0 0.0 0.0 4957.0 0 0 0 0 c 0 5310.0 6818.0 14449.0 14449.0 4463.0 5766.0 2053.0 0.0 0.0 14449.0 1434.0 0 0 0 0 g 0 1506.0 14449.0 0.0 0.0 2419.0 5928.0 4768.0 14449.0 14449.0 6924.0 5504.0 0 0 0 0 t 0 4904.0 0.0 0.0 0.0 7716.0 1440.0 0.0 0.0 0.0 0.0 2554.0 0 0 0 0