One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift4 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift4 (oligos_6nt_mkv2_m5oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5 (oligos_6nt_mkv2_m5oligos_6nt_mkv2_m5); m=0 (reference); ncol1=10; shift=4; ncol=16; ----ssCCCCGCsg-- ; Alignment reference a 0 0 0 0 0 3 0 0 0 0 0 0 2 1 0 0 c 0 0 0 0 10 7 23 21 23 24 0 25 8 6 0 0 g 0 0 0 0 11 9 2 4 2 1 25 0 9 15 0 0 t 0 0 0 0 4 6 0 0 0 0 0 0 6 3 0 0

MA1122.1_rc_shift3 (TFDP1_rc)
; oligos_6nt_mkv2_m5 versus MA1122.1_rc (TFDP1_rc); m=1/11; ncol2=11; w=10; offset=-1; strand=R; shift=3; score=0.659509; ---ssTTCCCGCsc-- ; cor=; Ncor= a 0 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 c 0 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 g 0 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 t 0 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0

MA1513.1_shift5 (KLF15)
; oligos_6nt_mkv2_m5 versus MA1513.1 (KLF15); m=2/11; ncol2=11; w=9; offset=1; strand=D; shift=5; score=0.614917; -----scCCCGCCCcs ; cor=; Ncor= a 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 c 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 g 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 t 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0

MA0599.1_shift5 (KLF5)
; oligos_6nt_mkv2_m5 versus MA0599.1 (KLF5); m=3/11; ncol2=10; w=9; offset=1; strand=D; shift=5; score=0.593891; -----gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0

MA0696.1_shift2 (ZIC1)
; oligos_6nt_mkv2_m5 versus MA0696.1 (ZIC1); m=4/11; ncol2=14; w=10; offset=-2; strand=D; shift=2; score=0.564998; --gACCCCCyGCTGyG ; cor=; Ncor= a 0 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 c 0 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 g 0 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 t 0 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0

MA0736.1_shift2 (GLIS2)
; oligos_6nt_mkv2_m5 versus MA0736.1 (GLIS2); m=5/11; ncol2=14; w=10; offset=-2; strand=D; shift=2; score=0.551023; --kACCCCCCrCramG ; cor=; Ncor= a 0 0 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 407.0 15.0 c 0 0 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 265.0 187.0 g 0 0 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 112.0 1051.0 t 0 0 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0 197.0 63.0

MA0697.1_shift2 (ZIC3)
; oligos_6nt_mkv2_m5 versus MA0697.1 (ZIC3); m=6/11; ncol2=15; w=10; offset=-2; strand=D; shift=2; score=0.541901; --gACCCCCYGCtGyG ; cor=; Ncor= a 0 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 c 0 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 g 0 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 t 0 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0

MA0751.1_shift2 (ZIC4)
; oligos_6nt_mkv2_m5 versus MA0751.1 (ZIC4); m=7/11; ncol2=15; w=10; offset=-2; strand=D; shift=2; score=0.526796; --krCCCCCyGykGyG ; cor=; Ncor= a 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 c 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 g 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 t 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0

MA1584.1_shift1 (ZIC5)
; oligos_6nt_mkv2_m5 versus MA1584.1 (ZIC5); m=8/11; ncol2=16; w=10; offset=-3; strand=D; shift=1; score=0.509132; -mgACCCCCCGCtGyG ; cor=; Ncor= a 0 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 c 0 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 g 0 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 t 0 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0

MA0162.4_shift0 (EGR1)
; oligos_6nt_mkv2_m5 versus MA0162.4 (EGR1); m=9/11; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.501472; ccmCGCCCACgCms-- ; cor=; Ncor= a 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 0 c 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 0 g 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 0 t 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0 0

MA1650.1_shift6 (ZBTB14)
; oligos_6nt_mkv2_m5 versus MA1650.1 (ZBTB14); m=10/11; ncol2=12; w=8; offset=2; strand=D; shift=6; score=0.433305; ------ssCCGCGCAC ; cor=; Ncor= a 0 0 0 0 0 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 c 0 0 0 0 0 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 g 0 0 0 0 0 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 t 0 0 0 0 0 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0

MA1548.1_shift1 (PLAGL2)
; oligos_6nt_mkv2_m5 versus MA1548.1 (PLAGL2); m=11/11; ncol2=10; w=7; offset=-3; strand=D; shift=1; score=0.402104; -tGGGCCCCCt----- ; cor=; Ncor= a 0 224.0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 210.0 0 0 0 0 0 c 0 224.0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 210.0 0 0 0 0 0 g 0 224.0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 210.0 0 0 0 0 0 t 0 327.0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 369.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m5_shift4 (oligos_6nt_mkv2_m5oligos_6nt_mkv2_m5)				; oligos_6nt_mkv2_m5 (oligos_6nt_mkv2_m5oligos_6nt_mkv2_m5); m=0 (reference); ncol1=10; shift=4; ncol=16; ----ssCCCCGCsg-- ; Alignment reference a 0 0 0 0 0 3 0 0 0 0 0 0 2 1 0 0 c 0 0 0 0 10 7 23 21 23 24 0 25 8 6 0 0 g 0 0 0 0 11 9 2 4 2 1 25 0 9 15 0 0 t 0 0 0 0 4 6 0 0 0 0 0 0 6 3 0 0
MA1122.1_rc_shift3 (TFDP1_rc)				; oligos_6nt_mkv2_m5 versus MA1122.1_rc (TFDP1_rc); m=1/11; ncol2=11; w=10; offset=-1; strand=R; shift=3; score=0.659509; ---ssTTCCCGCsc-- ; cor=; Ncor= a 0 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 c 0 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 g 0 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 t 0 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0
MA1513.1_shift5 (KLF15)				; oligos_6nt_mkv2_m5 versus MA1513.1 (KLF15); m=2/11; ncol2=11; w=9; offset=1; strand=D; shift=5; score=0.614917; -----scCCCGCCCcs ; cor=; Ncor= a 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 c 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 g 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 t 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0
MA0599.1_shift5 (KLF5)				; oligos_6nt_mkv2_m5 versus MA0599.1 (KLF5); m=3/11; ncol2=10; w=9; offset=1; strand=D; shift=5; score=0.593891; -----gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0
MA0696.1_shift2 (ZIC1)				; oligos_6nt_mkv2_m5 versus MA0696.1 (ZIC1); m=4/11; ncol2=14; w=10; offset=-2; strand=D; shift=2; score=0.564998; --gACCCCCyGCTGyG ; cor=; Ncor= a 0 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 c 0 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 g 0 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 t 0 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0
MA0736.1_shift2 (GLIS2)				; oligos_6nt_mkv2_m5 versus MA0736.1 (GLIS2); m=5/11; ncol2=14; w=10; offset=-2; strand=D; shift=2; score=0.551023; --kACCCCCCrCramG ; cor=; Ncor= a 0 0 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 407.0 15.0 c 0 0 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 265.0 187.0 g 0 0 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 112.0 1051.0 t 0 0 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0 197.0 63.0
MA0697.1_shift2 (ZIC3)				; oligos_6nt_mkv2_m5 versus MA0697.1 (ZIC3); m=6/11; ncol2=15; w=10; offset=-2; strand=D; shift=2; score=0.541901; --gACCCCCYGCtGyG ; cor=; Ncor= a 0 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 c 0 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 g 0 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 t 0 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0
MA0751.1_shift2 (ZIC4)				; oligos_6nt_mkv2_m5 versus MA0751.1 (ZIC4); m=7/11; ncol2=15; w=10; offset=-2; strand=D; shift=2; score=0.526796; --krCCCCCyGykGyG ; cor=; Ncor= a 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 c 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 g 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 t 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0
MA1584.1_shift1 (ZIC5)				; oligos_6nt_mkv2_m5 versus MA1584.1 (ZIC5); m=8/11; ncol2=16; w=10; offset=-3; strand=D; shift=1; score=0.509132; -mgACCCCCCGCtGyG ; cor=; Ncor= a 0 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 c 0 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 g 0 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 t 0 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0
MA0162.4_shift0 (EGR1)				; oligos_6nt_mkv2_m5 versus MA0162.4 (EGR1); m=9/11; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.501472; ccmCGCCCACgCms-- ; cor=; Ncor= a 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 0 c 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 0 g 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 0 t 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0 0
MA1650.1_shift6 (ZBTB14)				; oligos_6nt_mkv2_m5 versus MA1650.1 (ZBTB14); m=10/11; ncol2=12; w=8; offset=2; strand=D; shift=6; score=0.433305; ------ssCCGCGCAC ; cor=; Ncor= a 0 0 0 0 0 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 c 0 0 0 0 0 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 g 0 0 0 0 0 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 t 0 0 0 0 0 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0
MA1548.1_shift1 (PLAGL2)				; oligos_6nt_mkv2_m5 versus MA1548.1 (PLAGL2); m=11/11; ncol2=10; w=7; offset=-3; strand=D; shift=1; score=0.402104; -tGGGCCCCCt----- ; cor=; Ncor= a 0 224.0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 210.0 0 0 0 0 0 c 0 224.0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 210.0 0 0 0 0 0 g 0 224.0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 210.0 0 0 0 0 0 t 0 327.0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 369.0 0 0 0 0 0