One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m7/peak-motifs_oligos_6nt_mkv2_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m7/peak-motifs_oligos_6nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m7_shift5 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m7_shift5 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7)
; oligos_6nt_mkv2_m7 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7); m=0 (reference); ncol1=10; shift=5; ncol=16; -----hgCCTCCCwa- ; Alignment reference a 0 0 0 0 0 10 6 0 0 0 0 0 0 17 16 0 c 0 0 0 0 0 10 7 40 40 0 40 40 40 6 9 0 g 0 0 0 0 0 5 19 0 0 0 0 0 0 5 8 0 t 0 0 0 0 0 15 8 0 0 40 0 0 0 12 7 0

MA0528.2_rc_shift4 (ZNF263_rc)
; oligos_6nt_mkv2_m7 versus MA0528.2_rc (ZNF263_rc); m=1/9; ncol2=12; w=10; offset=-1; strand=R; shift=4; score=0.727169; ----csTCCTCCCcsc ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0

MA1653.1_shift3 (ZNF148)
; oligos_6nt_mkv2_m7 versus MA1653.1 (ZNF148); m=2/9; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.64305; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv2_m7 versus MA0599.1 (KLF5); m=3/9; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.604541; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1522.1_shift3 (MAZ)
; oligos_6nt_mkv2_m7 versus MA1522.1 (MAZ); m=4/9; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.597204; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA1627.1_shift5 (Wt1)
; oligos_6nt_mkv2_m7 versus MA1627.1 (Wt1); m=5/9; ncol2=14; w=10; offset=0; strand=D; shift=5; score=0.583619; -----cycCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA1596.1_shift0 (ZNF460)
; oligos_6nt_mkv2_m7 versus MA1596.1 (ZNF460); m=6/9; ncol2=16; w=10; offset=-5; strand=D; shift=0; score=0.574015; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA1587.1_shift1 (ZNF135)
; oligos_6nt_mkv2_m7 versus MA1587.1 (ZNF135); m=7/9; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.517299; -cCTCGACCTCCyrr- ; cor=; Ncor= a 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_6nt_mkv2_m7 versus MA1630.1_rc (Znf281_rc); m=8/9; ncol2=11; w=8; offset=2; strand=R; shift=7; score=0.490405; -------CcTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0

MA1578.1_shift7 (VEZF1)
; oligos_6nt_mkv2_m7 versus MA1578.1 (VEZF1); m=9/9; ncol2=10; w=8; offset=2; strand=D; shift=7; score=0.48657; -------CCCCCCmyt ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m7_shift5 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7)				; oligos_6nt_mkv2_m7 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7); m=0 (reference); ncol1=10; shift=5; ncol=16; -----hgCCTCCCwa- ; Alignment reference a 0 0 0 0 0 10 6 0 0 0 0 0 0 17 16 0 c 0 0 0 0 0 10 7 40 40 0 40 40 40 6 9 0 g 0 0 0 0 0 5 19 0 0 0 0 0 0 5 8 0 t 0 0 0 0 0 15 8 0 0 40 0 0 0 12 7 0
MA0528.2_rc_shift4 (ZNF263_rc)				; oligos_6nt_mkv2_m7 versus MA0528.2_rc (ZNF263_rc); m=1/9; ncol2=12; w=10; offset=-1; strand=R; shift=4; score=0.727169; ----csTCCTCCCcsc ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0
MA1653.1_shift3 (ZNF148)				; oligos_6nt_mkv2_m7 versus MA1653.1 (ZNF148); m=2/9; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.64305; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA0599.1_shift4 (KLF5)				; oligos_6nt_mkv2_m7 versus MA0599.1 (KLF5); m=3/9; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.604541; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA1522.1_shift3 (MAZ)				; oligos_6nt_mkv2_m7 versus MA1522.1 (MAZ); m=4/9; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.597204; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0
MA1627.1_shift5 (Wt1)				; oligos_6nt_mkv2_m7 versus MA1627.1 (Wt1); m=5/9; ncol2=14; w=10; offset=0; strand=D; shift=5; score=0.583619; -----cycCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA1596.1_shift0 (ZNF460)				; oligos_6nt_mkv2_m7 versus MA1596.1 (ZNF460); m=6/9; ncol2=16; w=10; offset=-5; strand=D; shift=0; score=0.574015; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA1587.1_shift1 (ZNF135)				; oligos_6nt_mkv2_m7 versus MA1587.1 (ZNF135); m=7/9; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.517299; -cCTCGACCTCCyrr- ; cor=; Ncor= a 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0
MA1630.1_rc_shift7 (Znf281_rc)				; oligos_6nt_mkv2_m7 versus MA1630.1_rc (Znf281_rc); m=8/9; ncol2=11; w=8; offset=2; strand=R; shift=7; score=0.490405; -------CcTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0
MA1578.1_shift7 (VEZF1)				; oligos_6nt_mkv2_m7 versus MA1578.1 (VEZF1); m=9/9; ncol2=10; w=8; offset=2; strand=D; shift=7; score=0.48657; -------CCCCCCmyt ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0