Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_6nt_mkv2_m9/peak-motifs_oligos_6nt_mkv2_m9.tf
		file1	1	10	41
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m9 MA0820.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 FIGLA 0.817 0.668 10 10 9 11 0.8182 0.9000 0.9000 R -1
oligos_6nt_mkv2_m9 MA1559.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 SNAI3 0.796 0.652 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m9 MA1558.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 SNAI1 0.794 0.650 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m9 MA1620.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 Ptf1a(var.3) 0.745 0.621 10 12 10 12 0.8333 1.0000 0.8333 R -2
oligos_6nt_mkv2_m9 MA1565.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX18 0.743 0.619 10 12 10 12 0.8333 1.0000 0.8333 D 0
oligos_6nt_mkv2_m9 MA0807.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX5 0.769 0.615 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m9 MA0103.3 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 ZEB1 0.803 0.602 10 11 9 12 0.7500 0.9000 0.8182 R -2
oligos_6nt_mkv2_m9 MA1567.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX6 0.735 0.601 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m9 MA0806.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX4 0.751 0.601 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m9 MA0745.2 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 SNAI2 0.774 0.596 10 13 10 13 0.7692 1.0000 0.7692 R -3
oligos_6nt_mkv2_m9 MA0803.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX15 0.729 0.583 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m9 MA0690.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX21 0.707 0.579 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m9 MA0499.2 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 MYOD1 0.747 0.575 10 13 10 13 0.7692 1.0000 0.7692 R -3
oligos_6nt_mkv2_m9 MA1566.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX3 0.700 0.573 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m9 MA1648.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TCF12(var.2) 0.759 0.569 10 11 9 12 0.7500 0.9000 0.8182 R -2
oligos_6nt_mkv2_m9 MA0522.3 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TCF3 0.759 0.569 10 11 9 12 0.7500 0.9000 0.8182 R -2
oligos_6nt_mkv2_m9 MA0805.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX1 0.710 0.568 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv2_m9 MA0830.2 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TCF4 0.731 0.562 10 13 10 13 0.7692 1.0000 0.7692 R -3
oligos_6nt_mkv2_m9 MA1631.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 ASCL1(var.2) 0.727 0.559 10 13 10 13 0.7692 1.0000 0.7692 R -3
oligos_6nt_mkv2_m9 MA1109.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 NEUROD1 0.711 0.547 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv2_m9 MA0688.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX2 0.728 0.546 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6nt_mkv2_m9 MA1621.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 Rbpjl 0.757 0.541 10 14 10 14 0.7143 1.0000 0.7143 R -3
oligos_6nt_mkv2_m9 MA0130.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 ZNF354C 0.897 0.538 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv2_m9 MA0689.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBX20 0.700 0.525 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6nt_mkv2_m9 MA0743.2 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 SCRT1 0.806 0.503 10 16 10 16 0.6250 1.0000 0.6250 D -6
oligos_6nt_mkv2_m9 MA0744.2 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 SCRT2 0.780 0.487 10 16 10 16 0.6250 1.0000 0.6250 D -6
oligos_6nt_mkv2_m9 MA0802.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 TBR1 0.720 0.480 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m9 MA1601.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 ZNF75D 0.709 0.473 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m9 MA0800.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 EOMES 0.705 0.453 10 13 9 14 0.6429 0.9000 0.6923 D 1
oligos_6nt_mkv2_m9 MA0513.1 oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9 SMAD2::SMAD3::SMAD4 0.763 0.407 10 13 8 15 0.5333 0.8000 0.6154 R 2 
 Host name	pedagogix
 Job started	2020-04-13.203521
 Job done	2020-04-13.203558
 Seconds	5
	user	5
	system	0.59
	cuser	29.68
;	csystem	1.53