One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m10/peak-motifs_oligos_7nt_mkv2_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m10/peak-motifs_oligos_7nt_mkv2_m10_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m10_shift3 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m10_shift3 (oligos_7nt_mkv2_m10oligos_7nt_mkv2_m10)
; oligos_7nt_mkv2_m10 (oligos_7nt_mkv2_m10oligos_7nt_mkv2_m10); m=0 (reference); ncol1=11; shift=3; ncol=18; ---GRAAAATGAGA---- ; Alignment reference a 0 0 0 3 34 112 112 110 112 0 0 112 1 92 0 0 0 0 c 0 0 0 2 1 0 0 0 0 0 0 0 16 2 0 0 0 0 g 0 0 0 105 77 0 0 0 0 0 112 0 77 17 0 0 0 0 t 0 0 0 2 0 0 0 2 0 112 0 0 18 1 0 0 0 0

MA0517.1_rc_shift3 (STAT1::STAT2_rc)
; oligos_7nt_mkv2_m10 versus MA0517.1_rc (STAT1::STAT2_rc); m=1/9; ncol2=15; w=11; offset=0; strand=R; shift=3; score=0.561567; ---rGRAAmyGAAACTra ; cor=; Ncor= a 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 c 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 g 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 t 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0

MA1549.1_shift5 (POU6F1(var.2))
; oligos_7nt_mkv2_m10 versus MA1549.1 (POU6F1(var.2)); m=2/9; ncol2=10; w=9; offset=2; strand=D; shift=5; score=0.545371; -----rTAATGAGst--- ; cor=; Ncor= a 0 0 0 0 0 2756.0 164.0 6413.0 6413.0 0.0 67.0 6413.0 314.0 1972.0 1577.0 0 0 0 c 0 0 0 0 0 416.0 273.0 179.0 0.0 0.0 206.0 96.0 851.0 3065.0 1238.0 0 0 0 g 0 0 0 0 0 1930.0 10.0 255.0 0.0 298.0 5799.0 0.0 6413.0 3348.0 1534.0 0 0 0 t 0 0 0 0 0 1312.0 6413.0 0.0 0.0 6413.0 615.0 411.0 1855.0 1462.0 2064.0 0 0 0

MA0152.1_rc_shift2 (NFATC2_rc)
; oligos_7nt_mkv2_m10 versus MA0152.1_rc (NFATC2_rc); m=3/9; ncol2=7; w=6; offset=-1; strand=R; shift=2; score=0.480475; --TGGAAAA--------- ; cor=; Ncor= a 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 0 0 0 0 0 0 0 c 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 0 0 0 0 0 0 0 g 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 0 0 0 0 0 0 0 t 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0 0 0 0 0 0 0 0

MA0606.1_rc_shift0 (NFAT5_rc)
; oligos_7nt_mkv2_m10 versus MA0606.1_rc (NFAT5_rc); m=4/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.452735; wrTGGAAAat-------- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 0 0 0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0 0 0 0 0

MA0051.1_shift3 (IRF2)
; oligos_7nt_mkv2_m10 versus MA0051.1 (IRF2); m=5/9; ncol2=18; w=11; offset=0; strand=D; shift=3; score=0.440893; ---sGAAAGyGAAAsyrw ; cor=; Ncor= a 0 0 0 0.0 2.0 12.0 11.0 12.0 2.0 0.0 0.0 12.0 12.0 12.0 0.0 0.0 5.0 6.0 c 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 6.0 7.0 2.0 0.0 g 0 0 0 7.0 10.0 0.0 0.0 0.0 10.0 0.0 12.0 0.0 0.0 0.0 6.0 2.0 3.0 2.0 t 0 0 0 1.0 0.0 0.0 1.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 0.0 3.0 2.0 4.0

MA0625.1_rc_shift0 (NFATC3_rc)
; oligos_7nt_mkv2_m10 versus MA0625.1_rc (NFATC3_rc); m=6/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.440449; aryGGAAAaw-------- ; cor=; Ncor= a 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 0 0 0 0 c 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 0 0 0 0 g 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 0 0 0 0 t 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0 0 0 0 0

MA1562.1_shift1 (SOX14)
; oligos_7nt_mkv2_m10 versus MA1562.1 (SOX14); m=7/9; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.44007; -cCGAACAATg------- ; cor=; Ncor= a 0 265.0 68.0 44.0 594.0 594.0 4.0 594.0 594.0 0.0 75.0 0 0 0 0 0 0 0 c 0 594.0 594.0 18.0 8.0 13.0 594.0 0.0 17.0 2.0 67.0 0 0 0 0 0 0 0 g 0 214.0 44.0 594.0 27.0 0.0 10.0 0.0 0.0 16.0 372.0 0 0 0 0 0 0 0 t 0 182.0 99.0 70.0 37.0 19.0 17.0 0.0 5.0 594.0 80.0 0 0 0 0 0 0 0

MA1525.1_shift0 (NFATC4)
; oligos_7nt_mkv2_m10 versus MA1525.1 (NFATC4); m=8/9; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.436684; aryGGAAAmw-------- ; cor=; Ncor= a 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 0 0 0 0 c 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 0 0 0 0 g 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 0 0 0 0 t 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0 0 0 0 0

MA0624.1_rc_shift0 (NFATC1_rc)
; oligos_7nt_mkv2_m10 versus MA0624.1_rc (NFATC1_rc); m=9/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.422626; aryGGAAaaw-------- ; cor=; Ncor= a 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 0 0 0 0 c 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 0 0 0 0 g 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 0 0 0 0 t 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m10_shift3 (oligos_7nt_mkv2_m10oligos_7nt_mkv2_m10)				; oligos_7nt_mkv2_m10 (oligos_7nt_mkv2_m10oligos_7nt_mkv2_m10); m=0 (reference); ncol1=11; shift=3; ncol=18; ---GRAAAATGAGA---- ; Alignment reference a 0 0 0 3 34 112 112 110 112 0 0 112 1 92 0 0 0 0 c 0 0 0 2 1 0 0 0 0 0 0 0 16 2 0 0 0 0 g 0 0 0 105 77 0 0 0 0 0 112 0 77 17 0 0 0 0 t 0 0 0 2 0 0 0 2 0 112 0 0 18 1 0 0 0 0
MA0517.1_rc_shift3 (STAT1::STAT2_rc)				; oligos_7nt_mkv2_m10 versus MA0517.1_rc (STAT1::STAT2_rc); m=1/9; ncol2=15; w=11; offset=0; strand=R; shift=3; score=0.561567; ---rGRAAmyGAAACTra ; cor=; Ncor= a 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 c 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 g 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 t 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0
MA1549.1_shift5 (POU6F1(var.2))				; oligos_7nt_mkv2_m10 versus MA1549.1 (POU6F1(var.2)); m=2/9; ncol2=10; w=9; offset=2; strand=D; shift=5; score=0.545371; -----rTAATGAGst--- ; cor=; Ncor= a 0 0 0 0 0 2756.0 164.0 6413.0 6413.0 0.0 67.0 6413.0 314.0 1972.0 1577.0 0 0 0 c 0 0 0 0 0 416.0 273.0 179.0 0.0 0.0 206.0 96.0 851.0 3065.0 1238.0 0 0 0 g 0 0 0 0 0 1930.0 10.0 255.0 0.0 298.0 5799.0 0.0 6413.0 3348.0 1534.0 0 0 0 t 0 0 0 0 0 1312.0 6413.0 0.0 0.0 6413.0 615.0 411.0 1855.0 1462.0 2064.0 0 0 0
MA0152.1_rc_shift2 (NFATC2_rc)				; oligos_7nt_mkv2_m10 versus MA0152.1_rc (NFATC2_rc); m=3/9; ncol2=7; w=6; offset=-1; strand=R; shift=2; score=0.480475; --TGGAAAA--------- ; cor=; Ncor= a 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 0 0 0 0 0 0 0 c 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 0 0 0 0 0 0 0 g 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 0 0 0 0 0 0 0 t 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0 0 0 0 0 0 0 0
MA0606.1_rc_shift0 (NFAT5_rc)				; oligos_7nt_mkv2_m10 versus MA0606.1_rc (NFAT5_rc); m=4/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.452735; wrTGGAAAat-------- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 0 0 0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0 0 0 0 0
MA0051.1_shift3 (IRF2)				; oligos_7nt_mkv2_m10 versus MA0051.1 (IRF2); m=5/9; ncol2=18; w=11; offset=0; strand=D; shift=3; score=0.440893; ---sGAAAGyGAAAsyrw ; cor=; Ncor= a 0 0 0 0.0 2.0 12.0 11.0 12.0 2.0 0.0 0.0 12.0 12.0 12.0 0.0 0.0 5.0 6.0 c 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 6.0 7.0 2.0 0.0 g 0 0 0 7.0 10.0 0.0 0.0 0.0 10.0 0.0 12.0 0.0 0.0 0.0 6.0 2.0 3.0 2.0 t 0 0 0 1.0 0.0 0.0 1.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 0.0 3.0 2.0 4.0
MA0625.1_rc_shift0 (NFATC3_rc)				; oligos_7nt_mkv2_m10 versus MA0625.1_rc (NFATC3_rc); m=6/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.440449; aryGGAAAaw-------- ; cor=; Ncor= a 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 0 0 0 0 c 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 0 0 0 0 g 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 0 0 0 0 t 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0 0 0 0 0
MA1562.1_shift1 (SOX14)				; oligos_7nt_mkv2_m10 versus MA1562.1 (SOX14); m=7/9; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.44007; -cCGAACAATg------- ; cor=; Ncor= a 0 265.0 68.0 44.0 594.0 594.0 4.0 594.0 594.0 0.0 75.0 0 0 0 0 0 0 0 c 0 594.0 594.0 18.0 8.0 13.0 594.0 0.0 17.0 2.0 67.0 0 0 0 0 0 0 0 g 0 214.0 44.0 594.0 27.0 0.0 10.0 0.0 0.0 16.0 372.0 0 0 0 0 0 0 0 t 0 182.0 99.0 70.0 37.0 19.0 17.0 0.0 5.0 594.0 80.0 0 0 0 0 0 0 0
MA1525.1_shift0 (NFATC4)				; oligos_7nt_mkv2_m10 versus MA1525.1 (NFATC4); m=8/9; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.436684; aryGGAAAmw-------- ; cor=; Ncor= a 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 0 0 0 0 c 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 0 0 0 0 g 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 0 0 0 0 t 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0 0 0 0 0
MA0624.1_rc_shift0 (NFATC1_rc)				; oligos_7nt_mkv2_m10 versus MA0624.1_rc (NFATC1_rc); m=9/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.422626; aryGGAAaaw-------- ; cor=; Ncor= a 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 0 0 0 0 c 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 0 0 0 0 g 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 0 0 0 0 t 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0 0 0 0 0