One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m11/peak-motifs_oligos_7nt_mkv2_m11.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m11/peak-motifs_oligos_7nt_mkv2_m11_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m11_shift2 ; 6 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv2_m11_shift2 (oligos_7nt_mkv2_m11oligos_7nt_mkv2_m11)     
; oligos_7nt_mkv2_m11 (oligos_7nt_mkv2_m11oligos_7nt_mkv2_m11); m=0 (reference); ncol1=11; shift=2; ncol=16; --CyCTGCCTChs---
; Alignment reference
a	0	0	3	0	0	0	0	0	0	0	0	10	0	0	0	0
c	0	0	27	18	34	0	0	35	35	0	35	11	15	0	0	0
g	0	0	1	2	1	1	35	0	0	0	0	2	17	0	0	0
t	0	0	4	15	0	34	0	0	0	35	0	12	3	0	0	0
MA1596.1_shift0 (ZNF460) 
; oligos_7nt_mkv2_m11 versus MA1596.1 (ZNF460); m=1/5; ncol2=16; w=11; offset=-2; strand=D; shift=0; score=0.541224; rCCTCmGCCTCCCrrG
; cor=; Ncor=
a	412.0	49.0	19.0	27.0	17.0	851.0	61.0	6.0	1.0	13.0	3.0	5.0	12.0	516.0	987.0	243.0
c	131.0	1264.0	1460.0	218.0	1519.0	495.0	23.0	1588.0	1596.0	12.0	1584.0	1583.0	1533.0	110.0	175.0	158.0
g	1023.0	185.0	67.0	83.0	47.0	181.0	1493.0	7.0	9.0	17.0	15.0	15.0	27.0	930.0	421.0	1147.0
t	46.0	114.0	66.0	1284.0	29.0	85.0	35.0	11.0	6.0	1570.0	10.0	9.0	40.0	56.0	29.0	64.0
MA0003.4_shift3 (TFAP2A) 
; oligos_7nt_mkv2_m11 versus MA0003.4 (TFAP2A); m=2/5; ncol2=14; w=10; offset=1; strand=D; shift=3; score=0.502209; ---vytgCCTCAGGsm
; cor=; Ncor=
a	0	0	0	4335.0	2763.0	2842.0	1088.0	280.0	116.0	278.0	530.0	13567.0	186.0	154.0	1221.0	4220.0
c	0	0	0	4092.0	4620.0	2634.0	3615.0	15321.0	15351.0	1173.0	13536.0	739.0	217.0	234.0	9445.0	4783.0
g	0	0	0	4072.0	3374.0	3791.0	9961.0	187.0	212.0	750.0	1406.0	1229.0	15432.0	15422.0	4098.0	3051.0
t	0	0	0	3469.0	5211.0	6701.0	1304.0	180.0	289.0	13767.0	496.0	433.0	133.0	158.0	1204.0	3914.0
MA0814.2_rc_shift3 (TFAP2C(var.2)_rc) 
; oligos_7nt_mkv2_m11 versus MA0814.2_rc (TFAP2C(var.2)_rc); m=3/5; ncol2=14; w=10; offset=1; strand=R; shift=3; score=0.483225; ---sbcGCCTCAGGcc
; cor=; Ncor=
a	0	0	0	14898.0	10705.0	10707.0	3881.0	614.0	464.0	1084.0	1238.0	49003.0	660.0	702.0	4622.0	14497.0
c	0	0	0	17367.0	18680.0	27373.0	9867.0	57916.0	57995.0	3944.0	55222.0	4910.0	2060.0	2273.0	37729.0	20129.0
g	0	0	0	16468.0	15252.0	12553.0	42758.0	1575.0	1486.0	4733.0	3036.0	5539.0	57617.0	57108.0	14686.0	12565.0
t	0	0	0	12086.0	16182.0	10186.0	4313.0	714.0	874.0	51058.0	1323.0	1367.0	482.0	736.0	3782.0	13628.0
MA0812.1_rc_shift5 (TFAP2B(var.2)_rc) 
; oligos_7nt_mkv2_m11 versus MA0812.1_rc (TFAP2B(var.2)_rc); m=4/5; ncol2=11; w=8; offset=3; strand=R; shift=5; score=0.43796; -----hGCCTsrGGCk
; cor=; Ncor=
a	0	0	0	0	0	1207.0	25.0	1.0	2.0	14.0	348.0	2716.0	158.0	0.0	30.0	1121.0
c	0	0	0	0	0	1149.0	299.0	4549.0	4549.0	446.0	1498.0	612.0	1.0	4.0	3940.0	232.0
g	0	0	0	0	0	371.0	4250.0	10.0	4.0	608.0	2126.0	1204.0	4549.0	4549.0	609.0	1412.0
t	0	0	0	0	0	1822.0	47.0	6.0	235.0	3480.0	576.0	16.0	0.0	0.0	36.0	1784.0
MA1569.1_shift5 (TFAP2E) 
; oligos_7nt_mkv2_m11 versus MA1569.1 (TFAP2E); m=5/5; ncol2=11; w=8; offset=3; strand=D; shift=5; score=0.404998; -----ysCCysrGGsr
; cor=; Ncor=
a	0	0	0	0	0	2554.0	0.0	0.0	0.0	0.0	1440.0	7716.0	0.0	0.0	0.0	4904.0
c	0	0	0	0	0	5504.0	6924.0	14449.0	14449.0	4768.0	5928.0	2419.0	0.0	0.0	14449.0	1506.0
g	0	0	0	0	0	1434.0	14449.0	0.0	0.0	2053.0	5766.0	4463.0	14449.0	14449.0	6818.0	5310.0
t	0	0	0	0	0	4957.0	0.0	0.0	0.0	7858.0	1316.0	0.0	0.0	0.0	0.0	2729.0