One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m14/peak-motifs_oligos_7nt_mkv2_m14.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m14/peak-motifs_oligos_7nt_mkv2_m14_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m14_shift3 ; 7 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv2_m14_shift3 (oligos_7nt_mkv2_m14oligos_7nt_mkv2_m14)     
; oligos_7nt_mkv2_m14 (oligos_7nt_mkv2_m14oligos_7nt_mkv2_m14); m=0 (reference); ncol1=11; shift=3; ncol=15; ---tMACTCACTCA-
; Alignment reference
a	0	0	0	1	17	24	0	0	0	24	0	0	2	21	0
c	0	0	0	5	7	0	24	0	24	0	24	0	20	1	0
g	0	0	0	2	0	0	0	0	0	0	0	0	2	1	0
t	0	0	0	16	0	0	0	24	0	0	0	24	0	1	0
MA1523.1_shift1 (MSANTD3) 
; oligos_7nt_mkv2_m14 versus MA1523.1 (MSANTD3); m=1/6; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.523543; -stmCACTCAm----
; cor=; Ncor=
a	0	98.0	111.0	332.0	64.0	980.0	31.0	37.0	47.0	775.0	271.0	0	0	0	0
c	0	269.0	211.0	272.0	723.0	0.0	896.0	7.0	862.0	140.0	568.0	0	0	0	0
g	0	515.0	220.0	249.0	31.0	2.0	27.0	0.0	29.0	24.0	63.0	0	0	0	0
t	0	117.0	456.0	145.0	180.0	16.0	45.0	954.0	60.0	59.0	96.0	0	0	0	0
MA0503.1_shift5 (Nkx2-5(var.2)) 
; oligos_7nt_mkv2_m14 versus MA0503.1 (Nkx2-5(var.2)); m=2/6; ncol2=11; w=9; offset=2; strand=D; shift=5; score=0.491186; -----arsCWCTCAa
; cor=; Ncor=
a	0	0	0	0	0	1790.0	1282.0	344.0	0.0	2467.0	0.0	0.0	0.0	2858.0	2265.0
c	0	0	0	0	0	327.0	192.0	1777.0	3429.0	6.0	3429.0	0.0	3391.0	431.0	3.0
g	0	0	0	0	0	821.0	1467.0	1292.0	0.0	0.0	0.0	0.0	0.0	0.0	825.0
t	0	0	0	0	0	491.0	488.0	16.0	0.0	956.0	0.0	3429.0	38.0	140.0	336.0
MA1645.1_shift4 (NKX2-2) 
; oligos_7nt_mkv2_m14 versus MA1645.1 (NKX2-2); m=3/6; ncol2=14; w=10; offset=1; strand=D; shift=4; score= 0.4748; ----hawCCACTCAA
; cor=; Ncor=
a	0	0	0	0	6953.0	9464.0	7295.0	2438.0	618.0	23748.0	478.0	490.0	397.0	21326.0	20003.0
c	0	0	0	0	6959.0	5638.0	5558.0	20232.0	24341.0	463.0	24693.0	452.0	24058.0	2772.0	2104.0
g	0	0	0	0	4904.0	4854.0	6329.0	2293.0	176.0	257.0	420.0	295.0	838.0	580.0	2266.0
t	0	0	0	0	7207.0	6067.0	6841.0	1060.0	888.0	1555.0	432.0	24786.0	730.0	1345.0	1650.0
MA0063.2_shift6 (NKX2-5) 
; oligos_7nt_mkv2_m14 versus MA0063.2 (NKX2-5); m=4/6; ncol2=11; w=8; offset=3; strand=D; shift=6; score=0.464907; ------rmCACTCAA
; cor=; Ncor=
a	0	0	0	0	0	0	1723.0	1526.0	96.0	5246.0	144.0	135.0	222.0	4819.0	4931.0
c	0	0	0	0	0	0	1024.0	1646.0	5002.0	48.0	5098.0	82.0	4319.0	120.0	165.0
g	0	0	0	0	0	0	1687.0	1318.0	24.0	76.0	49.0	61.0	62.0	217.0	98.0
t	0	0	0	0	0	0	1010.0	954.0	322.0	74.0	153.0	5166.0	841.0	288.0	250.0
MA0693.2_rc_shift2 (VDR_rc) 
; oligos_7nt_mkv2_m14 versus MA0693.2_rc (VDR_rc); m=5/6; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.424444; --TGAACyyr-----
; cor=; Ncor=
a	0	0	19.0	174.0	827.0	890.0	32.0	34.0	32.0	455.0	0	0	0	0	0
c	0	0	76.0	28.0	82.0	70.0	919.0	386.0	567.0	43.0	0	0	0	0	0
g	0	0	19.0	743.0	31.0	23.0	25.0	24.0	45.0	280.0	0	0	0	0	0
t	0	0	886.0	55.0	61.0	17.0	24.0	555.0	356.0	222.0	0	0	0	0	0
MA0478.1_shift0 (FOSL2) 
; oligos_7nt_mkv2_m14 versus MA0478.1 (FOSL2); m=6/6; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=0.405699; krrTGAsTCAb----
; cor=; Ncor=
a	833.0	1525.0	2861.0	0.0	0.0	5075.0	0.0	0.0	205.0	5318.0	0.0	0	0	0	0
c	994.0	592.0	55.0	0.0	0.0	51.0	3286.0	0.0	5113.0	0.0	1399.0	0	0	0	0
g	2086.0	2707.0	2328.0	0.0	5318.0	192.0	1838.0	0.0	0.0	0.0	1933.0	0	0	0	0
t	1405.0	494.0	74.0	5318.0	0.0	0.0	194.0	5318.0	0.0	0.0	1986.0	0	0	0	0