One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m15/peak-motifs_oligos_7nt_mkv2_m15.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m15/peak-motifs_oligos_7nt_mkv2_m15_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m15_shift4 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m15_shift4 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15)
; oligos_7nt_mkv2_m15 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15); m=0 (reference); ncol1=11; shift=4; ncol=16; ----ssCCCGCCGsg- ; Alignment reference a 0 0 0 0 4 4 0 1 0 0 3 0 0 3 3 0 c 0 0 0 0 7 11 23 24 26 0 19 23 2 10 5 0 g 0 0 0 0 11 8 3 2 1 27 5 4 25 11 18 0 t 0 0 0 0 5 4 1 0 0 0 0 0 0 3 1 0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv2_m15 versus MA1513.1 (KLF15); m=1/7; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.773409; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA0471.2_rc_shift2 (E2F6_rc)
; oligos_7nt_mkv2_m15 versus MA0471.2_rc (E2F6_rc); m=2/7; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.600109; --syTTCCCGCCyyc- ; cor=; Ncor= a 0 0 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 c 0 0 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 g 0 0 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 t 0 0 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0

MA0696.1_shift1 (ZIC1)
; oligos_7nt_mkv2_m15 versus MA0696.1 (ZIC1); m=3/7; ncol2=14; w=11; offset=-3; strand=D; shift=1; score=0.555583; -gACCCCCyGCTGyG- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0

MA0751.1_shift1 (ZIC4)
; oligos_7nt_mkv2_m15 versus MA0751.1 (ZIC4); m=4/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.551324; -krCCCCCyGykGyGh ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0

MA0697.1_shift1 (ZIC3)
; oligos_7nt_mkv2_m15 versus MA0697.1 (ZIC3); m=5/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.550655; -gACCCCCYGCtGyGh ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0

MA1584.1_shift0 (ZIC5)
; oligos_7nt_mkv2_m15 versus MA1584.1 (ZIC5); m=6/7; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.518347; mgACCCCCCGCtGyGm ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0

MA1122.1_rc_shift2 (TFDP1_rc)
; oligos_7nt_mkv2_m15 versus MA1122.1_rc (TFDP1_rc); m=7/7; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.498983; --ssTTCCCGCsc--- ; cor=; Ncor= a 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 c 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 g 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 t 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m15_shift4 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15)				; oligos_7nt_mkv2_m15 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15); m=0 (reference); ncol1=11; shift=4; ncol=16; ----ssCCCGCCGsg- ; Alignment reference a 0 0 0 0 4 4 0 1 0 0 3 0 0 3 3 0 c 0 0 0 0 7 11 23 24 26 0 19 23 2 10 5 0 g 0 0 0 0 11 8 3 2 1 27 5 4 25 11 18 0 t 0 0 0 0 5 4 1 0 0 0 0 0 0 3 1 0
MA1513.1_shift4 (KLF15)				; oligos_7nt_mkv2_m15 versus MA1513.1 (KLF15); m=1/7; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.773409; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0
MA0471.2_rc_shift2 (E2F6_rc)				; oligos_7nt_mkv2_m15 versus MA0471.2_rc (E2F6_rc); m=2/7; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.600109; --syTTCCCGCCyyc- ; cor=; Ncor= a 0 0 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 c 0 0 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 g 0 0 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 t 0 0 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0
MA0696.1_shift1 (ZIC1)				; oligos_7nt_mkv2_m15 versus MA0696.1 (ZIC1); m=3/7; ncol2=14; w=11; offset=-3; strand=D; shift=1; score=0.555583; -gACCCCCyGCTGyG- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0
MA0751.1_shift1 (ZIC4)				; oligos_7nt_mkv2_m15 versus MA0751.1 (ZIC4); m=4/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.551324; -krCCCCCyGykGyGh ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0
MA0697.1_shift1 (ZIC3)				; oligos_7nt_mkv2_m15 versus MA0697.1 (ZIC3); m=5/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.550655; -gACCCCCYGCtGyGh ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0
MA1584.1_shift0 (ZIC5)				; oligos_7nt_mkv2_m15 versus MA1584.1 (ZIC5); m=6/7; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.518347; mgACCCCCCGCtGyGm ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0
MA1122.1_rc_shift2 (TFDP1_rc)				; oligos_7nt_mkv2_m15 versus MA1122.1_rc (TFDP1_rc); m=7/7; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.498983; --ssTTCCCGCsc--- ; cor=; Ncor= a 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 c 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 g 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 t 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0