Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
		file1	1	14	57
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m4 MA0499.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MYOD1 0.839 0.780 14 13 13 14 0.9286 0.9286 1.0000 R 1
oligos_7nt_mkv2_m4 MA1641.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MYF5 0.894 0.767 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_7nt_mkv2_m4 MA1619.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Ptf1a(var.2) 0.891 0.764 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_7nt_mkv2_m4 MA0500.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MYOG 0.862 0.739 14 12 12 14 0.8571 0.8571 1.0000 R 2
oligos_7nt_mkv2_m4 MA0521.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Tcf12 0.933 0.733 14 11 11 14 0.7857 0.7857 1.0000 D 3
oligos_7nt_mkv2_m4 MA0745.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 SNAI2 0.749 0.696 14 13 13 14 0.9286 0.9286 1.0000 R 1
oligos_7nt_mkv2_m4 MA1485.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 FERD3L 0.797 0.691 14 14 13 15 0.8667 0.9286 0.9286 R 1
oligos_7nt_mkv2_m4 MA1593.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 ZNF317 0.799 0.685 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_7nt_mkv2_m4 MA0832.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Tcf21 0.784 0.680 14 14 13 15 0.8667 0.9286 0.9286 D 1
oligos_7nt_mkv2_m4 MA1618.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Ptf1a 0.716 0.665 14 13 13 14 0.9286 0.9286 1.0000 R 1
oligos_7nt_mkv2_m4 MA1571.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 TGIF2LX 0.772 0.661 14 12 12 14 0.8571 0.8571 1.0000 R 2
oligos_7nt_mkv2_m4 MA0796.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 TGIF1 0.767 0.657 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_7nt_mkv2_m4 MA1572.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 TGIF2LY 0.759 0.651 14 12 12 14 0.8571 0.8571 1.0000 R 2
oligos_7nt_mkv2_m4 MA0797.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 TGIF2 0.752 0.645 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_7nt_mkv2_m4 MA1620.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Ptf1a(var.3) 0.743 0.637 14 12 12 14 0.8571 0.8571 1.0000 R 2
oligos_7nt_mkv2_m4 MA1621.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Rbpjl 0.734 0.636 14 14 13 15 0.8667 0.9286 0.9286 R 1
oligos_7nt_mkv2_m4 MA1467.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 ATOH1(var.2) 0.878 0.627 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA1635.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 BHLHE22(var.2) 0.864 0.617 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_7nt_mkv2_m4 MA1472.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 BHLHA15(var.2) 0.863 0.616 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA0783.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 PKNOX2 0.707 0.606 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_7nt_mkv2_m4 MA0691.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 TFAP4 0.847 0.605 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_7nt_mkv2_m4 MA1100.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 ASCL1 0.825 0.589 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA0816.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 Ascl2 0.818 0.584 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_7nt_mkv2_m4 MA0665.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MSC 0.809 0.578 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_7nt_mkv2_m4 MA1123.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 TWIST1 0.714 0.571 14 13 12 15 0.8000 0.8571 0.9231 R 2
oligos_7nt_mkv2_m4 MA1109.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 NEUROD1 0.707 0.566 14 13 12 15 0.8000 0.8571 0.9231 D 2
oligos_7nt_mkv2_m4 MA0667.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MYF6 0.768 0.549 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA0048.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 NHLH1 0.762 0.545 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA0820.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 FIGLA 0.735 0.525 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA0100.3 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MYB 0.707 0.505 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m4 MA0774.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MEIS2 0.822 0.470 14 8 8 14 0.5714 0.5714 1.0000 D 1
oligos_7nt_mkv2_m4 MA0775.1 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MEIS3 0.777 0.444 14 8 8 14 0.5714 0.5714 1.0000 D 1
oligos_7nt_mkv2_m4 MA0498.2 oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4 MEIS1 0.839 0.419 14 7 7 14 0.5000 0.5000 1.0000 D 1 
 Host name	pedagogix
 Job started	2020-04-13.203709
 Job done	2020-04-13.203737
 Seconds	3.89
	user	3.89
	system	0.59
	cuser	22.11
;	csystem	1.55