One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift5 ; 11 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift5 (oligos_7nt_mkv2_m5oligos_7nt_mkv2_m5)     
; oligos_7nt_mkv2_m5 (oligos_7nt_mkv2_m5oligos_7nt_mkv2_m5); m=0 (reference); ncol1=11; shift=5; ncol=16; -----AmACTGAAAAw
; Alignment reference
a	0	0	0	0	0	80	55	98	0	0	0	98	98	98	90	60
c	0	0	0	0	0	0	40	0	98	0	0	0	0	0	4	2
g	0	0	0	0	0	10	0	0	0	0	98	0	0	0	2	0
t	0	0	0	0	0	8	3	0	0	98	0	0	0	0	2	36
MA1623.1_shift3 (Stat2) 
; oligos_7nt_mkv2_m5 versus MA1623.1 (Stat2); m=1/10; ncol2=13; w=11; offset=-2; strand=D; shift=3; score=0.661438; ---rgAAACAGAAAsw
; cor=; Ncor=
a	0	0	0	1605.0	969.0	3554.0	3736.0	3738.0	286.0	3146.0	152.0	3700.0	3747.0	3514.0	740.0	1262.0
c	0	0	0	538.0	306.0	76.0	75.0	72.0	2907.0	151.0	45.0	49.0	45.0	147.0	1502.0	758.0
g	0	0	0	1125.0	2287.0	168.0	71.0	87.0	524.0	74.0	3707.0	163.0	98.0	157.0	1180.0	591.0
t	0	0	0	691.0	397.0	161.0	77.0	62.0	242.0	588.0	55.0	47.0	69.0	141.0	537.0	1348.0
MA0772.1_shift2 (IRF7) 
; oligos_7nt_mkv2_m5 versus MA0772.1 (IRF7); m=2/10; ncol2=14; w=11; offset=-3; strand=D; shift=2; score=0.594326; --mCGAAAryGAAAvT
; cor=; Ncor=
a	0	0	373.0	97.0	36.0	957.0	957.0	957.0	279.0	8.0	30.0	957.0	957.0	957.0	1184.0	160.0
c	0	0	323.0	957.0	67.0	3.0	0.0	2.0	156.0	582.0	3.0	16.0	3.0	10.0	957.0	153.0
g	0	0	71.0	50.0	957.0	1.0	0.0	1.0	505.0	2.0	957.0	4.0	3.0	7.0	1235.0	31.0
t	0	0	191.0	46.0	90.0	0.0	1.0	1.0	17.0	375.0	7.0	5.0	1.0	41.0	301.0	804.0
MA0652.1_shift2 (IRF8) 
; oligos_7nt_mkv2_m5 versus MA0652.1 (IRF8); m=3/10; ncol2=14; w=11; offset=-3; strand=D; shift=2; score=0.570298; --yCGAAACCGAAACT
; cor=; Ncor=
a	0	0	1309.0	63.0	3.0	5878.0	5878.0	5878.0	54.0	6.0	0.0	5878.0	5878.0	5878.0	11.0	321.0
c	0	0	1996.0	5878.0	0.0	2.0	0.0	0.0	5878.0	5878.0	0.0	0.0	0.0	5.0	5878.0	1454.0
g	0	0	571.0	19.0	5878.0	0.0	0.0	0.0	580.0	0.0	5878.0	3.0	2.0	0.0	1061.0	8.0
t	0	0	2002.0	884.0	2.0	0.0	33.0	3.0	6.0	1228.0	0.0	0.0	68.0	0.0	15.0	5878.0
MA1420.1_shift2 (IRF5) 
; oligos_7nt_mkv2_m5 versus MA1420.1 (IRF5); m=4/10; ncol2=14; w=11; offset=-3; strand=D; shift=2; score=0.555499; --cCGAAACCGAAmCy
; cor=; Ncor=
a	0	0	35.0	10.0	15.0	223.0	224.0	225.0	1.0	0.0	105.0	224.0	206.0	223.0	29.0	22.0
c	0	0	169.0	177.0	3.0	2.0	5.0	0.0	180.0	182.0	30.0	11.0	6.0	84.0	171.0	80.0
g	0	0	22.0	17.0	357.0	6.0	4.0	5.0	0.0	0.0	365.0	7.0	25.0	12.0	25.0	23.0
t	0	0	42.0	38.0	21.0	7.0	44.0	1.0	4.0	37.0	8.0	1.0	40.0	15.0	22.0	157.0
MA1155.1_shift0 (ZSCAN4) 
; oligos_7nt_mkv2_m5 versus MA1155.1 (ZSCAN4); m=5/10; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.548818; tGCACACmCTGaAAa-
; cor=; Ncor=
a	257.0	290.0	0.0	1292.0	0.0	1281.0	3.0	772.0	7.0	8.0	3.0	1118.0	1225.0	1269.0	1000.0	0
c	383.0	2.0	1676.0	0.0	1665.0	0.0	1702.0	374.0	1684.0	11.0	50.0	107.0	279.0	0.0	200.0	0
g	112.0	1737.0	1.0	0.0	0.0	2.0	0.0	320.0	0.0	75.0	1873.0	230.0	0.0	2.0	365.0	0
t	1373.0	0.0	0.0	2.0	0.0	2.0	73.0	8.0	2.0	1699.0	218.0	362.0	6.0	1.0	229.0	0
MA0869.1_rc_shift4 (Sox11_rc) 
; oligos_7nt_mkv2_m5 versus MA0869.1_rc (Sox11_rc); m=6/10; ncol2=15; w=11; offset=-1; strand=R; shift=4; score=0.535813; ----AACACTGmAATT
; cor=; Ncor=
a	0	0	0	0	305.0	305.0	0.0	305.0	99.0	0.0	1.0	425.0	305.0	305.0	0.0	0.0
c	0	0	0	0	5.0	0.0	305.0	2.0	305.0	0.0	0.0	305.0	0.0	0.0	0.0	0.0
g	0	0	0	0	14.0	0.0	0.0	0.0	0.0	0.0	305.0	39.0	1.0	0.0	0.0	0.0
t	0	0	0	0	1.0	0.0	0.0	0.0	0.0	305.0	0.0	41.0	0.0	0.0	305.0	305.0
MA0653.1_shift1 (IRF9) 
; oligos_7nt_mkv2_m5 versus MA0653.1 (IRF9); m=7/10; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.530397; -AwCGAAACCGAAACy
; cor=; Ncor=
a	0	3467.0	2392.0	49.0	43.0	3467.0	3467.0	3467.0	43.0	16.0	2.0	3467.0	3467.0	3467.0	4.0	99.0
c	0	52.0	498.0	3467.0	3.0	5.0	0.0	2.0	3467.0	3467.0	0.0	2.0	1.0	0.0	3467.0	1129.0
g	0	43.0	204.0	33.0	3467.0	1.0	0.0	0.0	197.0	0.0	3467.0	0.0	0.0	0.0	239.0	7.0
t	0	110.0	1076.0	118.0	5.0	0.0	3.0	1.0	9.0	831.0	1.0	0.0	21.0	3.0	2.0	2338.0
MA0517.1_rc_shift3 (STAT1::STAT2_rc) 
; oligos_7nt_mkv2_m5 versus MA0517.1_rc (STAT1::STAT2_rc); m=8/10; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.523728; ---rGRAAmyGAAACT
; cor=; Ncor=
a	0	0	0	191.0	107.0	442.0	608.0	593.0	241.0	99.0	39.0	600.0	615.0	618.0	2.0	32.0
c	0	0	0	36.0	9.0	4.0	0.0	10.0	161.0	191.0	0.0	4.0	0.0	0.0	467.0	151.0
g	0	0	0	365.0	489.0	170.0	2.0	13.0	111.0	75.0	581.0	13.0	2.0	2.0	148.0	7.0
t	0	0	0	28.0	15.0	4.0	10.0	4.0	107.0	255.0	0.0	3.0	3.0	0.0	3.0	430.0
MA1419.1_shift2 (IRF4) 
; oligos_7nt_mkv2_m5 versus MA1419.1 (IRF4); m=9/10; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.515937; --yCGAAACCGAAACy
; cor=; Ncor=
a	0	0	10448.0	364.0	350.0	45331.0	45331.0	45331.0	187.0	27.0	57.0	45331.0	45331.0	45331.0	829.0	1377.0
c	0	0	18876.0	45331.0	66.0	124.0	8.0	6.0	45331.0	45331.0	6.0	46.0	11.0	15.0	45331.0	17589.0
g	0	0	2105.0	87.0	45331.0	91.0	25.0	4.0	593.0	4.0	45331.0	7.0	23.0	4.0	4251.0	253.0
t	0	0	13901.0	5937.0	31.0	112.0	444.0	8.0	497.0	3801.0	3.0	5.0	1002.0	13.0	80.0	27742.0
MA0152.1_rc_shift9 (NFATC2_rc) 
; oligos_7nt_mkv2_m5 versus MA0152.1_rc (NFATC2_rc); m=10/10; ncol2=7; w=7; offset=4; strand=R; shift=9; score=0.474043; ---------TGGAAAA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	4.0	0.0	0.0	26.0	24.0	21.0	20.0
c	0	0	0	0	0	0	0	0	0	1.0	0.0	0.0	0.0	0.0	2.0	2.0
g	0	0	0	0	0	0	0	0	0	3.0	26.0	25.0	0.0	1.0	2.0	1.0
t	0	0	0	0	0	0	0	0	0	18.0	0.0	1.0	0.0	1.0	1.0	3.0