One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m6/peak-motifs_oligos_7nt_mkv2_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m6/peak-motifs_oligos_7nt_mkv2_m6_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m6_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m6_shift0 (oligos_7nt_mkv2_m6oligos_7nt_mkv2_m6) |
 |
|
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; oligos_7nt_mkv2_m6 (oligos_7nt_mkv2_m6oligos_7nt_mkv2_m6); m=0 (reference); ncol1=11; shift=0; ncol=11; msTGAAAAAyr
; Alignment reference
a 78 23 0 1 138 138 138 124 139 6 38
c 58 59 0 0 0 0 0 0 0 59 4
g 1 41 0 138 1 1 0 0 0 16 93
t 2 16 139 0 0 0 1 15 0 58 4
|
| MA0606.1_rc_shift0 (NFAT5_rc) |
 |
|
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; oligos_7nt_mkv2_m6 versus MA0606.1_rc (NFAT5_rc); m=1/2; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.671421; wrTGGAAAat-
; cor=; Ncor=
a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0
c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0
g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0
t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0
|
| MA0152.1_rc_shift2 (NFATC2_rc) |
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; oligos_7nt_mkv2_m6 versus MA0152.1_rc (NFATC2_rc); m=2/2; ncol2=7; w=7; offset=2; strand=R; shift=2; score=0.486673; --TGGAAAA--
; cor=; Ncor=
a 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0
c 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0
g 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0
t 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0
|