One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m8/peak-motifs_oligos_7nt_mkv2_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m8/peak-motifs_oligos_7nt_mkv2_m8_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m8_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m8_shift3 (oligos_7nt_mkv2_m8oligos_7nt_mkv2_m8)
; oligos_7nt_mkv2_m8 (oligos_7nt_mkv2_m8oligos_7nt_mkv2_m8); m=0 (reference); ncol1=11; shift=3; ncol=14; ---smCCCTGCCwc ; Alignment reference a 0 0 0 4 10 0 0 0 0 2 0 0 9 6 c 0 0 0 20 15 34 33 34 3 0 34 34 4 16 g 0 0 0 9 5 0 1 0 0 32 0 0 5 6 t 0 0 0 1 4 0 0 0 31 0 0 0 16 6

MA1653.1_shift2 (ZNF148)
; oligos_7nt_mkv2_m8 versus MA1653.1 (ZNF148); m=1/6; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.668258; --ysCCCCTCCCcc ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0

MA1522.1_shift2 (MAZ)
; oligos_7nt_mkv2_m8 versus MA1522.1 (MAZ); m=2/6; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.613611; --ssCCCCTCCcc- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0

MA0155.1_rc_shift1 (INSM1_rc)
; oligos_7nt_mkv2_m8 versus MA0155.1_rc (INSM1_rc); m=3/6; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.573876; -ygmCCCCwkrCA- ; cor=; Ncor= a 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 19.0 0 c 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 4.0 0 g 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 0.0 0 t 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0 1.0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; oligos_7nt_mkv2_m8 versus MA1102.2_rc (CTCFL_rc); m=4/6; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.512438; scGCCCCCTGsy-- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0

MA0057.1_rc_shift1 (MZF1(var.2)_rc)
; oligos_7nt_mkv2_m8 versus MA0057.1_rc (MZF1(var.2)_rc); m=5/6; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.434764; -yymCCCMTmv--- ; cor=; Ncor= a 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 c 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 g 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 t 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0

MA0597.1_shift7 (THAP1)
; oligos_7nt_mkv2_m8 versus MA0597.1 (THAP1); m=6/6; ncol2=9; w=7; offset=4; strand=D; shift=7; score=0.422522; -------ytGCCMk ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m8_shift3 (oligos_7nt_mkv2_m8oligos_7nt_mkv2_m8)				; oligos_7nt_mkv2_m8 (oligos_7nt_mkv2_m8oligos_7nt_mkv2_m8); m=0 (reference); ncol1=11; shift=3; ncol=14; ---smCCCTGCCwc ; Alignment reference a 0 0 0 4 10 0 0 0 0 2 0 0 9 6 c 0 0 0 20 15 34 33 34 3 0 34 34 4 16 g 0 0 0 9 5 0 1 0 0 32 0 0 5 6 t 0 0 0 1 4 0 0 0 31 0 0 0 16 6
MA1653.1_shift2 (ZNF148)				; oligos_7nt_mkv2_m8 versus MA1653.1 (ZNF148); m=1/6; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.668258; --ysCCCCTCCCcc ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0
MA1522.1_shift2 (MAZ)				; oligos_7nt_mkv2_m8 versus MA1522.1 (MAZ); m=2/6; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.613611; --ssCCCCTCCcc- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0
MA0155.1_rc_shift1 (INSM1_rc)				; oligos_7nt_mkv2_m8 versus MA0155.1_rc (INSM1_rc); m=3/6; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.573876; -ygmCCCCwkrCA- ; cor=; Ncor= a 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 19.0 0 c 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 4.0 0 g 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 0.0 0 t 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0 1.0 0
MA1102.2_rc_shift0 (CTCFL_rc)				; oligos_7nt_mkv2_m8 versus MA1102.2_rc (CTCFL_rc); m=4/6; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.512438; scGCCCCCTGsy-- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0
MA0057.1_rc_shift1 (MZF1(var.2)_rc)				; oligos_7nt_mkv2_m8 versus MA0057.1_rc (MZF1(var.2)_rc); m=5/6; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.434764; -yymCCCMTmv--- ; cor=; Ncor= a 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 c 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 g 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 t 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0
MA0597.1_shift7 (THAP1)				; oligos_7nt_mkv2_m8 versus MA0597.1 (THAP1); m=6/6; ncol2=9; w=7; offset=4; strand=D; shift=7; score=0.422522; -------ytGCCMk ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0