Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9.tf
		file1	1	11	13
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m9 MA0621.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 mix-a 0.745 0.745 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m9 MA1463.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 ARGFX 0.720 0.654 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_7nt_mkv2_m9 MA0703.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 LMX1B 0.769 0.640 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv2_m9 MA0047.3 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXA2 0.742 0.618 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv2_m9 MA0846.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXC2 0.803 0.618 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_7nt_mkv2_m9 MA1606.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Foxf1 0.739 0.616 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv2_m9 MA1113.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 PBX2 0.724 0.612 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv2_m9 MA0481.3 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXP1 0.729 0.608 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv2_m9 MA1683.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXA3 0.728 0.606 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv2_m9 MA1103.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXK2 0.720 0.600 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv2_m9 MA0593.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXP2 0.709 0.591 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv2_m9 MA0852.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXK1 0.716 0.563 11 14 11 14 0.7857 1.0000 0.7857 D -2
oligos_7nt_mkv2_m9 MA0032.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXC1 0.807 0.559 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv2_m9 MA0845.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXB1 0.803 0.556 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv2_m9 MA0702.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 LMX1A 0.761 0.553 11 8 8 11 0.7273 0.7273 1.0000 R 1
oligos_7nt_mkv2_m9 MA0614.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Foxj2 0.755 0.549 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv2_m9 MA1489.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXN3 0.754 0.549 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv2_m9 MA1487.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXE1 0.735 0.539 11 15 11 15 0.7333 1.0000 0.7333 D -1
oligos_7nt_mkv2_m9 MA0613.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXG1 0.739 0.538 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv2_m9 MA0033.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXL1 0.823 0.524 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_7nt_mkv2_m9 MA0031.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXD1 0.716 0.520 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv2_m9 MA0851.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Foxj3 0.802 0.519 11 17 11 17 0.6471 1.0000 0.6471 D -4
oligos_7nt_mkv2_m9 MA0157.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXO3 0.714 0.519 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv2_m9 MA0848.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXO4 0.776 0.494 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_7nt_mkv2_m9 MA0042.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXI1 0.772 0.492 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_7nt_mkv2_m9 MA0030.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXF2 0.737 0.491 11 14 10 15 0.6667 0.9091 0.7143 D -4
oligos_7nt_mkv2_m9 MA0850.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXP3 0.761 0.484 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_7nt_mkv2_m9 MA0847.2 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXD2 0.793 0.476 11 13 9 15 0.6000 0.8182 0.6923 D -4
oligos_7nt_mkv2_m9 MA0849.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 FOXO6 0.744 0.473 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_7nt_mkv2_m9 MA1607.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Foxl2 0.705 0.470 11 14 10 15 0.6667 0.9091 0.7143 D -4
oligos_7nt_mkv2_m9 MA0853.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Alx4 0.721 0.467 11 17 11 17 0.6471 1.0000 0.6471 R -4
oligos_7nt_mkv2_m9 MA0854.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Alx1 0.705 0.456 11 17 11 17 0.6471 1.0000 0.6471 R -4
oligos_7nt_mkv2_m9 MA0151.1 oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9 Arid3a 0.737 0.402 11 6 6 11 0.5455 0.5455 1.0000 D 0 
 Host name	pedagogix
 Job started	2020-04-13.203754
 Job done	2020-04-13.203836
 Seconds	5.63
	user	5.63
	system	1.36
	cuser	31.84
;	csystem	2.77