One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_7nt_mkv2_m9/peak-motifs_oligos_7nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m9_shift4 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m9_shift4 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9)
; oligos_7nt_mkv2_m9 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9); m=0 (reference); ncol1=11; shift=4; ncol=17; ----wtTAAATAAag-- ; Alignment reference a 0 0 0 0 4 3 0 12 12 13 1 13 12 6 3 0 0 c 0 0 0 0 3 3 0 0 0 0 0 0 1 3 1 0 0 g 0 0 0 0 1 3 0 1 0 0 0 0 0 2 6 0 0 t 0 0 0 0 5 4 13 0 1 0 12 0 0 2 3 0 0

MA0621.1_rc_shift4 (mix-a_rc)
; oligos_7nt_mkv2_m9 versus MA0621.1_rc (mix-a_rc); m=1/33; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.745235; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0

MA1463.1_shift4 (ARGFX)
; oligos_7nt_mkv2_m9 versus MA1463.1 (ARGFX); m=2/33; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.654332; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0

MA0703.2_rc_shift5 (LMX1B_rc)
; oligos_7nt_mkv2_m9 versus MA0703.2_rc (LMX1B_rc); m=3/33; ncol2=11; w=10; offset=1; strand=R; shift=5; score=0.640455; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0

MA0047.3_shift3 (FOXA2)
; oligos_7nt_mkv2_m9 versus MA0047.3 (FOXA2); m=4/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.618451; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0 0 0

MA0846.1_shift2 (FOXC2)
; oligos_7nt_mkv2_m9 versus MA0846.1 (FOXC2); m=5/33; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.61791; --wAwrTAAAYAww--- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0

MA1606.1_shift3 (Foxf1)
; oligos_7nt_mkv2_m9 versus MA1606.1 (Foxf1); m=6/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.616207; ---awrTAAACAaa--- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0

MA1113.2_shift2 (PBX2)
; oligos_7nt_mkv2_m9 versus MA1113.2 (PBX2); m=7/33; ncol2=13; w=11; offset=-2; strand=D; shift=2; score=0.612348; --rhcATAAATCAtw-- ; cor=; Ncor= a 0 0 8363.0 8307.0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 6993.0 7897.0 0 0 c 0 0 5863.0 8859.0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 7057.0 7086.0 0 0 g 0 0 9625.0 3047.0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 3952.0 5574.0 0 0 t 0 0 5745.0 9383.0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 11594.0 9039.0 0 0

MA0481.3_shift3 (FOXP1)
; oligos_7nt_mkv2_m9 versus MA0481.3 (FOXP1); m=8/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.607765; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0 0 0

MA1683.1_shift3 (FOXA3)
; oligos_7nt_mkv2_m9 versus MA1683.1 (FOXA3); m=9/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.606368; ---rwGTAAACAww--- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0 0 0

MA1103.2_shift3 (FOXK2)
; oligos_7nt_mkv2_m9 versus MA1103.2 (FOXK2); m=10/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600326; ---awGTAAACAar--- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0 0 0

MA0593.1_shift3 (FOXP2)
; oligos_7nt_mkv2_m9 versus MA0593.1 (FOXP2); m=11/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.590957; ---awGTAAACAra--- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0

MA0852.2_shift2 (FOXK1)
; oligos_7nt_mkv2_m9 versus MA0852.2 (FOXK1); m=12/33; ncol2=14; w=11; offset=-2; strand=D; shift=2; score=0.562841; --wrkGTAAACAagsv- ; cor=; Ncor= a 0 0 329.0 416.0 247.0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 512.0 185.0 242.0 283.0 0 c 0 0 184.0 175.0 142.0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 199.0 201.0 269.0 288.0 0 g 0 0 258.0 270.0 272.0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 204.0 568.0 362.0 270.0 0 t 0 0 285.0 195.0 395.0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 141.0 102.0 183.0 215.0 0

MA0032.2_shift2 (FOXC1)
; oligos_7nt_mkv2_m9 versus MA0032.2 (FOXC1); m=13/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.558629; --wAwRTMAAyAw---- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0

MA0845.1_shift2 (FOXB1)
; oligos_7nt_mkv2_m9 versus MA0845.1 (FOXB1); m=14/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.555649; --wAwGTMAAyAt---- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0 0 0

MA0702.2_rc_shift5 (LMX1A_rc)
; oligos_7nt_mkv2_m9 versus MA0702.2_rc (LMX1A_rc); m=15/33; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.553491; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0

MA0614.1_shift5 (Foxj2)
; oligos_7nt_mkv2_m9 versus MA0614.1 (Foxj2); m=16/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.549045; -----rTAAACAa---- ; cor=; Ncor= a 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 c 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 g 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 t 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0

MA1489.1_shift5 (FOXN3)
; oligos_7nt_mkv2_m9 versus MA1489.1 (FOXN3); m=17/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.548608; -----GTAAACAA---- ; cor=; Ncor= a 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 c 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 g 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 t 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0

MA1487.1_shift3 (FOXE1)
; oligos_7nt_mkv2_m9 versus MA1487.1 (FOXE1); m=18/33; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.538914; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0

MA0613.1_shift5 (FOXG1)
; oligos_7nt_mkv2_m9 versus MA0613.1 (FOXG1); m=19/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.537778; -----rTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 g 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0

MA0033.2_shift5 (FOXL1)
; oligos_7nt_mkv2_m9 versus MA0033.2 (FOXL1); m=20/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score= 0.5237; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0

MA0031.1_shift5 (FOXD1)
; oligos_7nt_mkv2_m9 versus MA0031.1 (FOXD1); m=21/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.52045; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 g 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 t 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0

MA0851.1_shift0 (Foxj3)
; oligos_7nt_mkv2_m9 versus MA0851.1 (Foxj3); m=22/33; ncol2=17; w=11; offset=-4; strand=D; shift=0; score=0.519241; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0

MA0157.2_shift5 (FOXO3)
; oligos_7nt_mkv2_m9 versus MA0157.2 (FOXO3); m=23/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.519136; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 g 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 t 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_7nt_mkv2_m9 versus MA0848.1 (FOXO4); m=24/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.493879; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0

MA0042.2_shift5 (FOXI1)
; oligos_7nt_mkv2_m9 versus MA0042.2 (FOXI1); m=25/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.491537; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0 0

MA0030.1_shift0 (FOXF2)
; oligos_7nt_mkv2_m9 versus MA0030.1 (FOXF2); m=26/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.491101; bmaasRTAAACAaw--- ; cor=; Ncor= a 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 c 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 g 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 t 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0

MA0850.1_shift5 (FOXP3)
; oligos_7nt_mkv2_m9 versus MA0850.1 (FOXP3); m=27/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.484369; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0

MA0847.2_shift0 (FOXD2)
; oligos_7nt_mkv2_m9 versus MA0847.2 (FOXD2); m=28/33; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.475636; sywAwRTAAAYAw---- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0 0 0

MA0849.1_shift5 (FOXO6)
; oligos_7nt_mkv2_m9 versus MA0849.1 (FOXO6); m=29/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.473445; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0 0

MA1607.1_shift0 (Foxl2)
; oligos_7nt_mkv2_m9 versus MA1607.1 (Foxl2); m=30/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.469831; rwwaTGTAAACAwr--- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0 0 0

MA0853.1_rc_shift0 (Alx4_rc)
; oligos_7nt_mkv2_m9 versus MA0853.1_rc (Alx4_rc); m=31/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.466761; gstdayTAATTArygcg ; cor=; Ncor= a 24.0 23.0 22.0 30.0 42.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 16.0 21.0 10.0 11.0 c 21.0 25.0 19.0 13.0 18.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 29.0 16.0 56.0 15.0 g 43.0 29.0 23.0 28.0 23.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 15.0 44.0 24.0 59.0 t 12.0 23.0 36.0 29.0 17.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 40.0 19.0 10.0 16.0

MA0854.1_rc_shift0 (Alx1_rc)
; oligos_7nt_mkv2_m9 versus MA0854.1_rc (Alx1_rc); m=32/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.456205; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0

MA0151.1_shift4 (Arid3a)
; oligos_7nt_mkv2_m9 versus MA0151.1 (Arid3a); m=33/33; ncol2=6; w=6; offset=0; strand=D; shift=4; score=0.402164; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m9_shift4 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9)				; oligos_7nt_mkv2_m9 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9); m=0 (reference); ncol1=11; shift=4; ncol=17; ----wtTAAATAAag-- ; Alignment reference a 0 0 0 0 4 3 0 12 12 13 1 13 12 6 3 0 0 c 0 0 0 0 3 3 0 0 0 0 0 0 1 3 1 0 0 g 0 0 0 0 1 3 0 1 0 0 0 0 0 2 6 0 0 t 0 0 0 0 5 4 13 0 1 0 12 0 0 2 3 0 0
MA0621.1_rc_shift4 (mix-a_rc)				; oligos_7nt_mkv2_m9 versus MA0621.1_rc (mix-a_rc); m=1/33; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.745235; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0
MA1463.1_shift4 (ARGFX)				; oligos_7nt_mkv2_m9 versus MA1463.1 (ARGFX); m=2/33; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.654332; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0
MA0703.2_rc_shift5 (LMX1B_rc)				; oligos_7nt_mkv2_m9 versus MA0703.2_rc (LMX1B_rc); m=3/33; ncol2=11; w=10; offset=1; strand=R; shift=5; score=0.640455; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0
MA0047.3_shift3 (FOXA2)				; oligos_7nt_mkv2_m9 versus MA0047.3 (FOXA2); m=4/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.618451; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0 0 0
MA0846.1_shift2 (FOXC2)				; oligos_7nt_mkv2_m9 versus MA0846.1 (FOXC2); m=5/33; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.61791; --wAwrTAAAYAww--- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0
MA1606.1_shift3 (Foxf1)				; oligos_7nt_mkv2_m9 versus MA1606.1 (Foxf1); m=6/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.616207; ---awrTAAACAaa--- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0
MA1113.2_shift2 (PBX2)				; oligos_7nt_mkv2_m9 versus MA1113.2 (PBX2); m=7/33; ncol2=13; w=11; offset=-2; strand=D; shift=2; score=0.612348; --rhcATAAATCAtw-- ; cor=; Ncor= a 0 0 8363.0 8307.0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 6993.0 7897.0 0 0 c 0 0 5863.0 8859.0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 7057.0 7086.0 0 0 g 0 0 9625.0 3047.0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 3952.0 5574.0 0 0 t 0 0 5745.0 9383.0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 11594.0 9039.0 0 0
MA0481.3_shift3 (FOXP1)				; oligos_7nt_mkv2_m9 versus MA0481.3 (FOXP1); m=8/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.607765; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0 0 0
MA1683.1_shift3 (FOXA3)				; oligos_7nt_mkv2_m9 versus MA1683.1 (FOXA3); m=9/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.606368; ---rwGTAAACAww--- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0 0 0
MA1103.2_shift3 (FOXK2)				; oligos_7nt_mkv2_m9 versus MA1103.2 (FOXK2); m=10/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600326; ---awGTAAACAar--- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0 0 0
MA0593.1_shift3 (FOXP2)				; oligos_7nt_mkv2_m9 versus MA0593.1 (FOXP2); m=11/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.590957; ---awGTAAACAra--- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0
MA0852.2_shift2 (FOXK1)				; oligos_7nt_mkv2_m9 versus MA0852.2 (FOXK1); m=12/33; ncol2=14; w=11; offset=-2; strand=D; shift=2; score=0.562841; --wrkGTAAACAagsv- ; cor=; Ncor= a 0 0 329.0 416.0 247.0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 512.0 185.0 242.0 283.0 0 c 0 0 184.0 175.0 142.0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 199.0 201.0 269.0 288.0 0 g 0 0 258.0 270.0 272.0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 204.0 568.0 362.0 270.0 0 t 0 0 285.0 195.0 395.0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 141.0 102.0 183.0 215.0 0
MA0032.2_shift2 (FOXC1)				; oligos_7nt_mkv2_m9 versus MA0032.2 (FOXC1); m=13/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.558629; --wAwRTMAAyAw---- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0
MA0845.1_shift2 (FOXB1)				; oligos_7nt_mkv2_m9 versus MA0845.1 (FOXB1); m=14/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.555649; --wAwGTMAAyAt---- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0 0 0
MA0702.2_rc_shift5 (LMX1A_rc)				; oligos_7nt_mkv2_m9 versus MA0702.2_rc (LMX1A_rc); m=15/33; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.553491; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0
MA0614.1_shift5 (Foxj2)				; oligos_7nt_mkv2_m9 versus MA0614.1 (Foxj2); m=16/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.549045; -----rTAAACAa---- ; cor=; Ncor= a 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 c 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 g 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 t 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0
MA1489.1_shift5 (FOXN3)				; oligos_7nt_mkv2_m9 versus MA1489.1 (FOXN3); m=17/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.548608; -----GTAAACAA---- ; cor=; Ncor= a 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 c 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 g 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 t 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0
MA1487.1_shift3 (FOXE1)				; oligos_7nt_mkv2_m9 versus MA1487.1 (FOXE1); m=18/33; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.538914; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0
MA0613.1_shift5 (FOXG1)				; oligos_7nt_mkv2_m9 versus MA0613.1 (FOXG1); m=19/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.537778; -----rTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 g 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0
MA0033.2_shift5 (FOXL1)				; oligos_7nt_mkv2_m9 versus MA0033.2 (FOXL1); m=20/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score= 0.5237; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0
MA0031.1_shift5 (FOXD1)				; oligos_7nt_mkv2_m9 versus MA0031.1 (FOXD1); m=21/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.52045; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 g 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 t 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0
MA0851.1_shift0 (Foxj3)				; oligos_7nt_mkv2_m9 versus MA0851.1 (Foxj3); m=22/33; ncol2=17; w=11; offset=-4; strand=D; shift=0; score=0.519241; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0
MA0157.2_shift5 (FOXO3)				; oligos_7nt_mkv2_m9 versus MA0157.2 (FOXO3); m=23/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.519136; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 g 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 t 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0
MA0848.1_shift5 (FOXO4)				; oligos_7nt_mkv2_m9 versus MA0848.1 (FOXO4); m=24/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.493879; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0
MA0042.2_shift5 (FOXI1)				; oligos_7nt_mkv2_m9 versus MA0042.2 (FOXI1); m=25/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.491537; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0 0
MA0030.1_shift0 (FOXF2)				; oligos_7nt_mkv2_m9 versus MA0030.1 (FOXF2); m=26/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.491101; bmaasRTAAACAaw--- ; cor=; Ncor= a 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 c 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 g 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 t 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0
MA0850.1_shift5 (FOXP3)				; oligos_7nt_mkv2_m9 versus MA0850.1 (FOXP3); m=27/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.484369; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0
MA0847.2_shift0 (FOXD2)				; oligos_7nt_mkv2_m9 versus MA0847.2 (FOXD2); m=28/33; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.475636; sywAwRTAAAYAw---- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0 0 0
MA0849.1_shift5 (FOXO6)				; oligos_7nt_mkv2_m9 versus MA0849.1 (FOXO6); m=29/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.473445; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0 0
MA1607.1_shift0 (Foxl2)				; oligos_7nt_mkv2_m9 versus MA1607.1 (Foxl2); m=30/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.469831; rwwaTGTAAACAwr--- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0 0 0
MA0853.1_rc_shift0 (Alx4_rc)				; oligos_7nt_mkv2_m9 versus MA0853.1_rc (Alx4_rc); m=31/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.466761; gstdayTAATTArygcg ; cor=; Ncor= a 24.0 23.0 22.0 30.0 42.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 16.0 21.0 10.0 11.0 c 21.0 25.0 19.0 13.0 18.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 29.0 16.0 56.0 15.0 g 43.0 29.0 23.0 28.0 23.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 15.0 44.0 24.0 59.0 t 12.0 23.0 36.0 29.0 17.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 40.0 19.0 10.0 16.0
MA0854.1_rc_shift0 (Alx1_rc)				; oligos_7nt_mkv2_m9 versus MA0854.1_rc (Alx1_rc); m=32/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.456205; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0
MA0151.1_shift4 (Arid3a)				; oligos_7nt_mkv2_m9 versus MA0151.1 (Arid3a); m=33/33; ncol2=6; w=6; offset=0; strand=D; shift=4; score=0.402164; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0