One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m11/peak-motifs_oligos_8nt_mkv2_m11.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m11/peak-motifs_oligos_8nt_mkv2_m11_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m11_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_8nt_mkv2_m11_shift0 (oligos_8nt_mkv2_m11oligos_8nt_mkv2_m11) |
 |
|
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; oligos_8nt_mkv2_m11 (oligos_8nt_mkv2_m11oligos_8nt_mkv2_m11); m=0 (reference); ncol1=13; shift=0; ncol=13; AGAAATRCACACT
; Alignment reference
a 59 4 71 72 71 0 18 0 68 0 72 1 3
c 0 2 1 0 0 2 2 71 1 72 0 52 0
g 3 63 0 0 0 1 50 0 1 0 0 9 3
t 10 3 0 0 1 69 2 1 2 0 0 10 66
|
| MA0479.1_shift0 (FOXH1) |
 |
|
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; oligos_8nt_mkv2_m11 versus MA0479.1 (FOXH1); m=1/1; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.622566; ybsAATMCACA--
; cor=; Ncor=
a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0
c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0
g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0
t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0
|