One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m16/peak-motifs_oligos_8nt_mkv2_m16.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m16/peak-motifs_oligos_8nt_mkv2_m16_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m16_shift5 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m16_shift5 (oligos_8nt_mkv2_m16oligos_8nt_mkv2_m16)
; oligos_8nt_mkv2_m16 (oligos_8nt_mkv2_m16oligos_8nt_mkv2_m16); m=0 (reference); ncol1=12; shift=5; ncol=17; -----YkGAAAATsAyr ; Alignment reference a 0 0 0 0 0 2 7 1 73 73 71 73 0 1 72 3 31 c 0 0 0 0 0 52 2 0 0 0 1 0 0 46 1 19 1 g 0 0 0 0 0 0 25 72 0 0 0 0 0 26 0 15 36 t 0 0 0 0 0 19 39 0 0 0 1 0 73 0 0 36 5

MA0152.1_rc_shift5 (NFATC2_rc)
; oligos_8nt_mkv2_m16 versus MA0152.1_rc (NFATC2_rc); m=1/8; ncol2=7; w=7; offset=0; strand=R; shift=5; score=0.47265; -----TGGAAAA----- ; cor=; Ncor= a 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 0 0 0 g 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 0 0 0 t 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0 0 0 0

MA0625.1_rc_shift3 (NFATC3_rc)
; oligos_8nt_mkv2_m16 versus MA0625.1_rc (NFATC3_rc); m=2/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.454316; ---aryGGAAAaw---- ; cor=; Ncor= a 0 0 0 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 c 0 0 0 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 g 0 0 0 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 t 0 0 0 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0

MA1525.1_shift3 (NFATC4)
; oligos_8nt_mkv2_m16 versus MA1525.1 (NFATC4); m=3/8; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.449878; ---aryGGAAAmw---- ; cor=; Ncor= a 0 0 0 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 c 0 0 0 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 g 0 0 0 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 t 0 0 0 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0

MA0038.2_shift8 (GFI1)
; oligos_8nt_mkv2_m16 versus MA0038.2 (GFI1); m=4/8; ncol2=12; w=9; offset=3; strand=D; shift=8; score=0.44931; --------cmAATCACd ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 c 0 0 0 0 0 0 0 0 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 g 0 0 0 0 0 0 0 0 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 t 0 0 0 0 0 0 0 0 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0

MA0624.1_rc_shift3 (NFATC1_rc)
; oligos_8nt_mkv2_m16 versus MA0624.1_rc (NFATC1_rc); m=5/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.437408; ---aryGGAAaaw---- ; cor=; Ncor= a 0 0 0 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 c 0 0 0 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 g 0 0 0 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 t 0 0 0 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0

MA0606.1_rc_shift3 (NFAT5_rc)
; oligos_8nt_mkv2_m16 versus MA0606.1_rc (NFAT5_rc); m=6/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.434815; ---wrTGGAAAat---- ; cor=; Ncor= a 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 c 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 g 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 t 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0

MA0517.1_rc_shift0 (STAT1::STAT2_rc)
; oligos_8nt_mkv2_m16 versus MA0517.1_rc (STAT1::STAT2_rc); m=7/8; ncol2=15; w=10; offset=-5; strand=R; shift=0; score=0.428557; rGRAAmyGAAACTra-- ; cor=; Ncor= a 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 0 0 c 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 0 0 g 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 0 0 t 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0 0 0

MA0483.1_shift9 (Gfi1b)
; oligos_8nt_mkv2_m16 versus MA0483.1 (Gfi1b); m=8/8; ncol2=11; w=8; offset=4; strand=D; shift=9; score=0.419547; ---------aAATCwCw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 c 0 0 0 0 0 0 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 g 0 0 0 0 0 0 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 t 0 0 0 0 0 0 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m16_shift5 (oligos_8nt_mkv2_m16oligos_8nt_mkv2_m16)				; oligos_8nt_mkv2_m16 (oligos_8nt_mkv2_m16oligos_8nt_mkv2_m16); m=0 (reference); ncol1=12; shift=5; ncol=17; -----YkGAAAATsAyr ; Alignment reference a 0 0 0 0 0 2 7 1 73 73 71 73 0 1 72 3 31 c 0 0 0 0 0 52 2 0 0 0 1 0 0 46 1 19 1 g 0 0 0 0 0 0 25 72 0 0 0 0 0 26 0 15 36 t 0 0 0 0 0 19 39 0 0 0 1 0 73 0 0 36 5
MA0152.1_rc_shift5 (NFATC2_rc)				; oligos_8nt_mkv2_m16 versus MA0152.1_rc (NFATC2_rc); m=1/8; ncol2=7; w=7; offset=0; strand=R; shift=5; score=0.47265; -----TGGAAAA----- ; cor=; Ncor= a 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 0 0 0 g 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 0 0 0 t 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0 0 0 0
MA0625.1_rc_shift3 (NFATC3_rc)				; oligos_8nt_mkv2_m16 versus MA0625.1_rc (NFATC3_rc); m=2/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.454316; ---aryGGAAAaw---- ; cor=; Ncor= a 0 0 0 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 c 0 0 0 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 g 0 0 0 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 t 0 0 0 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0
MA1525.1_shift3 (NFATC4)				; oligos_8nt_mkv2_m16 versus MA1525.1 (NFATC4); m=3/8; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.449878; ---aryGGAAAmw---- ; cor=; Ncor= a 0 0 0 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 c 0 0 0 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 g 0 0 0 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 t 0 0 0 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0
MA0038.2_shift8 (GFI1)				; oligos_8nt_mkv2_m16 versus MA0038.2 (GFI1); m=4/8; ncol2=12; w=9; offset=3; strand=D; shift=8; score=0.44931; --------cmAATCACd ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 c 0 0 0 0 0 0 0 0 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 g 0 0 0 0 0 0 0 0 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 t 0 0 0 0 0 0 0 0 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0
MA0624.1_rc_shift3 (NFATC1_rc)				; oligos_8nt_mkv2_m16 versus MA0624.1_rc (NFATC1_rc); m=5/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.437408; ---aryGGAAaaw---- ; cor=; Ncor= a 0 0 0 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 c 0 0 0 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 g 0 0 0 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 t 0 0 0 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0
MA0606.1_rc_shift3 (NFAT5_rc)				; oligos_8nt_mkv2_m16 versus MA0606.1_rc (NFAT5_rc); m=6/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.434815; ---wrTGGAAAat---- ; cor=; Ncor= a 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 c 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 g 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 t 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0
MA0517.1_rc_shift0 (STAT1::STAT2_rc)				; oligos_8nt_mkv2_m16 versus MA0517.1_rc (STAT1::STAT2_rc); m=7/8; ncol2=15; w=10; offset=-5; strand=R; shift=0; score=0.428557; rGRAAmyGAAACTra-- ; cor=; Ncor= a 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 0 0 c 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 0 0 g 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 0 0 t 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0 0 0
MA0483.1_shift9 (Gfi1b)				; oligos_8nt_mkv2_m16 versus MA0483.1 (Gfi1b); m=8/8; ncol2=11; w=8; offset=4; strand=D; shift=9; score=0.419547; ---------aAATCwCw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 c 0 0 0 0 0 0 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 g 0 0 0 0 0 0 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 t 0 0 0 0 0 0 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0