One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m23/peak-motifs_oligos_8nt_mkv2_m23.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m23/peak-motifs_oligos_8nt_mkv2_m23_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m23_shift4 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m23_shift4 (oligos_8nt_mkv2_m23oligos_8nt_mkv2_m23)
; oligos_8nt_mkv2_m23 (oligos_8nt_mkv2_m23oligos_8nt_mkv2_m23); m=0 (reference); ncol1=12; shift=4; ncol=20; ----hkCCTTCCTCyb---- ; Alignment reference a 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2 1 8 8 0 0 8 8 0 8 3 3 0 0 0 0 g 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 2 0 0 0 0 t 0 0 0 0 3 4 0 0 7 8 0 0 8 0 4 3 0 0 0 0

MA0764.2_rc_shift5 (ETV4_rc)
; oligos_8nt_mkv2_m23 versus MA0764.2_rc (ETV4_rc); m=1/8; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.690392; -----yrCTTCCTgy----- ; cor=; Ncor= a 0 0 0 0 0 1426.0 2975.0 31.0 8.0 40.0 67.0 14.0 0.0 664.0 1080.0 0 0 0 0 0 c 0 0 0 0 0 3055.0 1949.0 8344.0 0.0 0.0 8345.0 8308.0 0.0 1936.0 2721.0 0 0 0 0 0 g 0 0 0 0 0 1597.0 2194.0 28.0 73.0 0.0 1.0 92.0 61.0 4608.0 1494.0 0 0 0 0 0 t 0 0 0 0 0 2336.0 1296.0 11.0 8333.0 8374.0 1.0 0.0 8353.0 1206.0 3119.0 0 0 0 0 0

MA0508.3_shift5 (PRDM1)
; oligos_8nt_mkv2_m23 versus MA0508.3 (PRDM1); m=2/8; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.673603; -----ywCTTTCTCty---- ; cor=; Ncor= a 0 0 0 0 0 8762.0 17153.0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 10522.0 10124.0 0 0 0 0 c 0 0 0 0 0 17788.0 12288.0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 13567.0 17518.0 0 0 0 0 g 0 0 0 0 0 6638.0 8768.0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 4098.0 7861.0 0 0 0 0 t 0 0 0 0 0 22293.0 17272.0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 27294.0 19978.0 0 0 0 0

MA0081.2_shift2 (SPIB)
; oligos_8nt_mkv2_m23 versus MA0081.2 (SPIB); m=3/8; ncol2=16; w=12; offset=-2; strand=D; shift=2; score=0.542384; --tytCACTTCCTCttty-- ; cor=; Ncor= a 0 0 5347.0 4682.0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 4026.0 0 0 c 0 0 5797.0 8293.0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 8589.0 0 0 g 0 0 4026.0 4544.0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 4165.0 0 0 t 0 0 11760.0 9411.0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 10150.0 0 0

MA0687.1_rc_shift5 (SPIC_rc)
; oligos_8nt_mkv2_m23 versus MA0687.1_rc (SPIC_rc); m=4/8; ncol2=14; w=11; offset=1; strand=R; shift=5; score=0.534933; -----tACTTCCksWTTtt- ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 72.0 0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 68.0 0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 83.0 0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 144.0 0

MA1508.1_rc_shift6 (IKZF1_rc)
; oligos_8nt_mkv2_m23 versus MA1508.1_rc (IKZF1_rc); m=5/8; ncol2=12; w=10; offset=2; strand=R; shift=6; score=0.505385; ------ryTTCCTGTTyy-- ; cor=; Ncor= a 0 0 0 0 0 0 3389.0 1024.0 289.0 51.0 137.0 118.0 260.0 295.0 352.0 631.0 1571.0 1695.0 0 0 c 0 0 0 0 0 0 2317.0 4919.0 261.0 297.0 10185.0 10569.0 252.0 1272.0 956.0 1007.0 2868.0 3873.0 0 0 g 0 0 0 0 0 0 2991.0 1675.0 114.0 247.0 178.0 106.0 212.0 8678.0 473.0 1158.0 2292.0 2055.0 0 0 t 0 0 0 0 0 0 2221.0 3300.0 10254.0 10323.0 418.0 125.0 10194.0 673.0 9137.0 8122.0 4187.0 3295.0 0 0

MA0149.1_rc_shift2 (EWSR1-FLI1_rc)
; oligos_8nt_mkv2_m23 versus MA0149.1_rc (EWSR1-FLI1_rc); m=6/8; ncol2=18; w=12; offset=-2; strand=R; shift=2; score=0.492733; --CCTTCCTTCCTTCCTTCC ; cor=; Ncor= a 0 0 2.0 3.0 1.0 2.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 c 0 0 97.0 97.0 2.0 0.0 103.0 105.0 0.0 2.0 103.0 104.0 3.0 2.0 102.0 104.0 1.0 1.0 103.0 105.0 g 0 0 3.0 0.0 0.0 3.0 2.0 0.0 0.0 4.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 3.0 5.0 102.0 100.0 0.0 0.0 105.0 99.0 0.0 0.0 102.0 103.0 2.0 1.0 104.0 104.0 2.0 0.0

MA0528.2_rc_shift7 (ZNF263_rc)
; oligos_8nt_mkv2_m23 versus MA0528.2_rc (ZNF263_rc); m=7/8; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.467449; -------csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0

MA0080.5_rc_shift0 (SPI1_rc)
; oligos_8nt_mkv2_m23 versus MA0080.5_rc (SPI1_rc); m=8/8; ncol2=20; w=12; offset=-4; strand=R; shift=0; score=0.453795; wyttTCACTTCCTCTttyyy ; cor=; Ncor= a 37146.0 32717.0 27628.0 21682.0 10315.0 5993.0 108324.0 2191.0 3215.0 1280.0 1287.0 1702.0 4147.0 6119.0 17071.0 13450.0 17055.0 21525.0 29424.0 30010.0 c 28335.0 34829.0 29188.0 30577.0 20647.0 103485.0 7231.0 109802.0 1308.0 1407.0 127639.0 125703.0 12544.0 100825.0 13479.0 25580.0 25893.0 37341.0 34277.0 38405.0 g 24884.0 26246.0 16927.0 20113.0 11316.0 12697.0 3717.0 9931.0 792.0 1339.0 954.0 568.0 3425.0 10958.0 2914.0 12269.0 11424.0 20183.0 21262.0 22587.0 t 42838.0 39411.0 59460.0 60831.0 90925.0 11028.0 13931.0 11279.0 127888.0 129177.0 3323.0 5230.0 113087.0 15301.0 99739.0 81904.0 78831.0 54154.0 48240.0 42201.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m23_shift4 (oligos_8nt_mkv2_m23oligos_8nt_mkv2_m23)				; oligos_8nt_mkv2_m23 (oligos_8nt_mkv2_m23oligos_8nt_mkv2_m23); m=0 (reference); ncol1=12; shift=4; ncol=20; ----hkCCTTCCTCyb---- ; Alignment reference a 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2 1 8 8 0 0 8 8 0 8 3 3 0 0 0 0 g 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 2 0 0 0 0 t 0 0 0 0 3 4 0 0 7 8 0 0 8 0 4 3 0 0 0 0
MA0764.2_rc_shift5 (ETV4_rc)				; oligos_8nt_mkv2_m23 versus MA0764.2_rc (ETV4_rc); m=1/8; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.690392; -----yrCTTCCTgy----- ; cor=; Ncor= a 0 0 0 0 0 1426.0 2975.0 31.0 8.0 40.0 67.0 14.0 0.0 664.0 1080.0 0 0 0 0 0 c 0 0 0 0 0 3055.0 1949.0 8344.0 0.0 0.0 8345.0 8308.0 0.0 1936.0 2721.0 0 0 0 0 0 g 0 0 0 0 0 1597.0 2194.0 28.0 73.0 0.0 1.0 92.0 61.0 4608.0 1494.0 0 0 0 0 0 t 0 0 0 0 0 2336.0 1296.0 11.0 8333.0 8374.0 1.0 0.0 8353.0 1206.0 3119.0 0 0 0 0 0
MA0508.3_shift5 (PRDM1)				; oligos_8nt_mkv2_m23 versus MA0508.3 (PRDM1); m=2/8; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.673603; -----ywCTTTCTCty---- ; cor=; Ncor= a 0 0 0 0 0 8762.0 17153.0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 10522.0 10124.0 0 0 0 0 c 0 0 0 0 0 17788.0 12288.0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 13567.0 17518.0 0 0 0 0 g 0 0 0 0 0 6638.0 8768.0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 4098.0 7861.0 0 0 0 0 t 0 0 0 0 0 22293.0 17272.0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 27294.0 19978.0 0 0 0 0
MA0081.2_shift2 (SPIB)				; oligos_8nt_mkv2_m23 versus MA0081.2 (SPIB); m=3/8; ncol2=16; w=12; offset=-2; strand=D; shift=2; score=0.542384; --tytCACTTCCTCttty-- ; cor=; Ncor= a 0 0 5347.0 4682.0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 4026.0 0 0 c 0 0 5797.0 8293.0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 8589.0 0 0 g 0 0 4026.0 4544.0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 4165.0 0 0 t 0 0 11760.0 9411.0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 10150.0 0 0
MA0687.1_rc_shift5 (SPIC_rc)				; oligos_8nt_mkv2_m23 versus MA0687.1_rc (SPIC_rc); m=4/8; ncol2=14; w=11; offset=1; strand=R; shift=5; score=0.534933; -----tACTTCCksWTTtt- ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 72.0 0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 68.0 0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 83.0 0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 144.0 0
MA1508.1_rc_shift6 (IKZF1_rc)				; oligos_8nt_mkv2_m23 versus MA1508.1_rc (IKZF1_rc); m=5/8; ncol2=12; w=10; offset=2; strand=R; shift=6; score=0.505385; ------ryTTCCTGTTyy-- ; cor=; Ncor= a 0 0 0 0 0 0 3389.0 1024.0 289.0 51.0 137.0 118.0 260.0 295.0 352.0 631.0 1571.0 1695.0 0 0 c 0 0 0 0 0 0 2317.0 4919.0 261.0 297.0 10185.0 10569.0 252.0 1272.0 956.0 1007.0 2868.0 3873.0 0 0 g 0 0 0 0 0 0 2991.0 1675.0 114.0 247.0 178.0 106.0 212.0 8678.0 473.0 1158.0 2292.0 2055.0 0 0 t 0 0 0 0 0 0 2221.0 3300.0 10254.0 10323.0 418.0 125.0 10194.0 673.0 9137.0 8122.0 4187.0 3295.0 0 0
MA0149.1_rc_shift2 (EWSR1-FLI1_rc)				; oligos_8nt_mkv2_m23 versus MA0149.1_rc (EWSR1-FLI1_rc); m=6/8; ncol2=18; w=12; offset=-2; strand=R; shift=2; score=0.492733; --CCTTCCTTCCTTCCTTCC ; cor=; Ncor= a 0 0 2.0 3.0 1.0 2.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 c 0 0 97.0 97.0 2.0 0.0 103.0 105.0 0.0 2.0 103.0 104.0 3.0 2.0 102.0 104.0 1.0 1.0 103.0 105.0 g 0 0 3.0 0.0 0.0 3.0 2.0 0.0 0.0 4.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 3.0 5.0 102.0 100.0 0.0 0.0 105.0 99.0 0.0 0.0 102.0 103.0 2.0 1.0 104.0 104.0 2.0 0.0
MA0528.2_rc_shift7 (ZNF263_rc)				; oligos_8nt_mkv2_m23 versus MA0528.2_rc (ZNF263_rc); m=7/8; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.467449; -------csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0
MA0080.5_rc_shift0 (SPI1_rc)				; oligos_8nt_mkv2_m23 versus MA0080.5_rc (SPI1_rc); m=8/8; ncol2=20; w=12; offset=-4; strand=R; shift=0; score=0.453795; wyttTCACTTCCTCTttyyy ; cor=; Ncor= a 37146.0 32717.0 27628.0 21682.0 10315.0 5993.0 108324.0 2191.0 3215.0 1280.0 1287.0 1702.0 4147.0 6119.0 17071.0 13450.0 17055.0 21525.0 29424.0 30010.0 c 28335.0 34829.0 29188.0 30577.0 20647.0 103485.0 7231.0 109802.0 1308.0 1407.0 127639.0 125703.0 12544.0 100825.0 13479.0 25580.0 25893.0 37341.0 34277.0 38405.0 g 24884.0 26246.0 16927.0 20113.0 11316.0 12697.0 3717.0 9931.0 792.0 1339.0 954.0 568.0 3425.0 10958.0 2914.0 12269.0 11424.0 20183.0 21262.0 22587.0 t 42838.0 39411.0 59460.0 60831.0 90925.0 11028.0 13931.0 11279.0 127888.0 129177.0 3323.0 5230.0 113087.0 15301.0 99739.0 81904.0 78831.0 54154.0 48240.0 42201.0