Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24.tf
		file1	1	12	32
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv2_m24 MA0703.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 LMX1B 0.847 0.777 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv2_m24 MA1125.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 ZNF384 0.705 0.705 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv2_m24 MA0621.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 mix-a 0.761 0.698 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_8nt_mkv2_m24 MA0601.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Arid3b 0.741 0.680 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv2_m24 MA1463.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 ARGFX 0.759 0.632 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_8nt_mkv2_m24 MA0707.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 MNX1 0.757 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_8nt_mkv2_m24 MA0901.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 HOXB13 0.716 0.613 12 14 12 14 0.8571 1.0000 0.8571 D 0
oligos_8nt_mkv2_m24 MA0634.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 ALX3 0.712 0.594 12 10 10 12 0.8333 0.8333 1.0000 R 0
oligos_8nt_mkv2_m24 MA1487.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXE1 0.717 0.574 12 15 12 15 0.8000 1.0000 0.8000 D -1
oligos_8nt_mkv2_m24 MA0702.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 LMX1A 0.841 0.560 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0715.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 PROP1 0.714 0.549 12 11 10 13 0.7692 0.8333 0.9091 R 2
oligos_8nt_mkv2_m24 MA0846.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXC2 0.758 0.541 12 12 10 14 0.7143 0.8333 0.8333 D -2
oligos_8nt_mkv2_m24 MA0851.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Foxj3 0.762 0.538 12 17 12 17 0.7059 1.0000 0.7059 D -4
oligos_8nt_mkv2_m24 MA0704.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Lhx4 0.777 0.518 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0853.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Alx4 0.731 0.516 12 17 12 17 0.7059 1.0000 0.7059 D -3
oligos_8nt_mkv2_m24 MA0674.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 NKX6-1 0.768 0.512 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA1519.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 LHX5 0.758 0.505 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0854.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Alx1 0.707 0.499 12 17 12 17 0.7059 1.0000 0.7059 D -3
oligos_8nt_mkv2_m24 MA0722.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 VAX1 0.747 0.498 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0032.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXC1 0.774 0.498 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_8nt_mkv2_m24 MA0725.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 VSX1 0.741 0.494 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0845.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXB1 0.769 0.494 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_8nt_mkv2_m24 MA1481.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 DRGX 0.736 0.491 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0726.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 VSX2 0.736 0.491 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0075.3 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 PRRX2 0.736 0.490 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0654.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 ISX 0.736 0.490 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0723.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 VAX2 0.730 0.487 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0716.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 PRRX1 0.729 0.486 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0721.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 UNCX 0.728 0.485 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0614.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Foxj2 0.723 0.482 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA1577.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 TLX2 0.720 0.480 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0720.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Shox2 0.719 0.479 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0675.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 NKX6-2 0.718 0.479 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0701.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 LHX9 0.715 0.476 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0612.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 EMX1 0.714 0.476 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0900.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 HOXA2 0.714 0.476 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA1489.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXN3 0.713 0.475 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0132.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 PDX1 0.712 0.475 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0630.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 SHOX 0.710 0.473 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0613.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXG1 0.706 0.471 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0885.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Dlx2 0.702 0.468 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m24 MA0717.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 RAX2 0.701 0.468 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m24 MA0033.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXL1 0.795 0.464 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m24 MA0041.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Foxd3 0.744 0.447 12 12 9 15 0.6000 0.7500 0.7500 R 3
oligos_8nt_mkv2_m24 MA0850.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXP3 0.743 0.434 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m24 MA0848.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXO4 0.733 0.427 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m24 MA0847.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXD2 0.757 0.426 12 13 9 16 0.5625 0.7500 0.6923 D -4
oligos_8nt_mkv2_m24 MA0042.2 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 FOXI1 0.726 0.424 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m24 MA0040.1 oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24 Foxq1 0.771 0.411 12 11 8 15 0.5333 0.6667 0.7273 R 4 
 Host name	pedagogix
 Job started	2020-04-13.204525
 Job done	2020-04-13.204609
 Seconds	5.92
	user	5.92
	system	0.98
	cuser	34.23
;	csystem	2.43