One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m24/peak-motifs_oligos_8nt_mkv2_m24_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m24_shift4 ; 50 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_8nt_mkv2_m24_shift4 (oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24)     
; oligos_8nt_mkv2_m24 (oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24); m=0 (reference); ncol1=12; shift=4; ncol=17; ----wwTAAATAAAaw-
; Alignment reference
a	0	0	0	0	11	13	1	31	31	23	1	29	29	28	16	11	0
c	0	0	0	0	4	1	1	0	0	1	0	0	2	0	4	6	0
g	0	0	0	0	3	6	2	0	0	1	1	2	1	2	5	2	0
t	0	0	0	0	14	12	28	1	1	7	30	1	0	2	7	13	0
MA0703.2_rc_shift5 (LMX1B_rc) 
; oligos_8nt_mkv2_m24 versus MA0703.2_rc (LMX1B_rc); m=1/49; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.77682; -----tTAATTAAawt-
; cor=; Ncor=
a	0	0	0	0	0	609.0	0.0	4064.0	4064.0	0.0	0.0	4064.0	3465.0	2955.0	2058.0	663.0	0
c	0	0	0	0	0	350.0	0.0	0.0	0.0	0.0	0.0	0.0	190.0	936.0	756.0	890.0	0
g	0	0	0	0	0	785.0	12.0	0.0	0.0	0.0	0.0	0.0	599.0	548.0	680.0	617.0	0
t	0	0	0	0	0	2319.0	4064.0	0.0	0.0	4064.0	4064.0	0.0	0.0	1109.0	2005.0	1894.0	0
MA1125.1_shift4 (ZNF384) 
; oligos_8nt_mkv2_m24 versus MA1125.1 (ZNF384); m=2/49; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.70533; ----wwwmAAAAAAaa-
; cor=; Ncor=
a	0	0	0	0	9460.0	9116.0	9522.0	13125.0	30354.0	30191.0	30072.0	30252.0	30202.0	30406.0	20322.0	18916.0	0
c	0	0	0	0	4945.0	7025.0	3456.0	7691.0	7.0	35.0	21.0	13.0	26.0	6.0	2908.0	3963.0	0
g	0	0	0	0	5650.0	5133.0	4678.0	4721.0	13.0	19.0	26.0	15.0	14.0	0.0	2767.0	2898.0	0
t	0	0	0	0	10378.0	9159.0	12777.0	4896.0	59.0	188.0	314.0	153.0	191.0	21.0	4436.0	4656.0	0
MA0621.1_rc_shift4 (mix-a_rc) 
; oligos_8nt_mkv2_m24 versus MA0621.1_rc (mix-a_rc); m=3/49; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.697916; ----mcTAATTAayt--
; cor=; Ncor=
a	0	0	0	0	301.0	184.0	21.0	1000.0	1000.0	0.0	0.0	1000.0	679.0	244.0	229.0	0	0
c	0	0	0	0	290.0	488.0	21.0	0.0	0.0	0.0	0.0	0.0	46.0	261.0	229.0	0	0
g	0	0	0	0	205.0	100.0	21.0	0.0	0.0	0.0	0.0	0.0	146.0	150.0	229.0	0	0
t	0	0	0	0	205.0	228.0	938.0	0.0	0.0	1000.0	1000.0	0.0	130.0	345.0	312.0	0	0
MA0601.1_rc_shift5 (Arid3b_rc) 
; oligos_8nt_mkv2_m24 versus MA0601.1_rc (Arid3b_rc); m=4/49; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.679518; -----ttwATTAAtwt-
; cor=; Ncor=
a	0	0	0	0	0	216.0	170.0	498.0	911.0	89.0	0.0	1000.0	895.0	238.0	566.0	177.0	0
c	0	0	0	0	0	216.0	170.0	73.0	0.0	0.0	0.0	0.0	0.0	34.0	80.0	177.0	0
g	0	0	0	0	0	216.0	170.0	168.0	0.0	0.0	0.0	0.0	0.0	119.0	80.0	177.0	0
t	0	0	0	0	0	351.0	490.0	262.0	89.0	911.0	1000.0	0.0	104.0	609.0	273.0	468.0	0
MA1463.1_shift4 (ARGFX) 
; oligos_8nt_mkv2_m24 versus MA1463.1 (ARGFX); m=5/49; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.632445; ----kcTAATTAra---
; cor=; Ncor=
a	0	0	0	0	3893.0	2558.0	270.0	16589.0	16589.0	0.0	0.0	16589.0	10340.0	6983.0	0	0	0
c	0	0	0	0	1750.0	16589.0	1130.0	46.0	0.0	0.0	44.0	499.0	563.0	4098.0	0	0	0
g	0	0	0	0	4467.0	1748.0	96.0	0.0	0.0	0.0	0.0	1492.0	6249.0	2351.0	0	0	0
t	0	0	0	0	6479.0	4423.0	16589.0	4.0	0.0	16589.0	16589.0	1048.0	900.0	3158.0	0	0	0
MA0707.1_shift4 (MNX1) 
; oligos_8nt_mkv2_m24 versus MA0707.1 (MNX1); m=6/49; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.630498; ----dsyAATTAaa---
; cor=; Ncor=
a	0	0	0	0	213.0	127.0	1.0	610.0	610.0	8.0	140.0	610.0	319.0	264.0	0	0	0
c	0	0	0	0	25.0	167.0	217.0	121.0	36.0	43.0	21.0	0.0	54.0	123.0	0	0	0
g	0	0	0	0	214.0	191.0	7.0	0.0	0.0	0.0	65.0	0.0	112.0	109.0	0	0	0
t	0	0	0	0	158.0	125.0	393.0	56.0	0.0	610.0	610.0	0.0	124.0	115.0	0	0	0
MA0901.2_shift4 (HOXB13) 
; oligos_8nt_mkv2_m24 versus MA0901.2 (HOXB13); m=7/49; ncol2=14; w=12; offset=0; strand=D; shift=4; score= 0.6133; ----wwcCAATAAAAww
; cor=; Ncor=
a	0	0	0	0	31357.0	27207.0	11896.0	4212.0	66409.0	73044.0	421.0	73612.0	75997.0	76077.0	70230.0	22968.0	26156.0
c	0	0	0	0	10859.0	13275.0	47674.0	65312.0	4611.0	726.0	550.0	523.0	599.0	760.0	2465.0	12415.0	13152.0
g	0	0	0	0	13066.0	15206.0	9096.0	582.0	351.0	1913.0	586.0	1083.0	490.0	625.0	1882.0	7376.0	11759.0
t	0	0	0	0	23432.0	23026.0	10048.0	8608.0	7343.0	3031.0	77157.0	3496.0	1628.0	1252.0	4137.0	35955.0	27647.0
MA0634.1_rc_shift4 (ALX3_rc) 
; oligos_8nt_mkv2_m24 versus MA0634.1_rc (ALX3_rc); m=8/49; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.59369; ----kyTAATTrrr---
; cor=; Ncor=
a	0	0	0	0	1168.0	1403.0	977.0	7877.0	7877.0	231.0	629.0	4510.0	2337.0	3390.0	0	0	0
c	0	0	0	0	1503.0	2205.0	87.0	239.0	8.0	141.0	885.0	345.0	1150.0	1062.0	0	0	0
g	0	0	0	0	2446.0	1671.0	449.0	729.0	72.0	317.0	506.0	3367.0	3402.0	2174.0	0	0	0
t	0	0	0	0	2759.0	2597.0	7877.0	697.0	76.0	7877.0	7877.0	794.0	987.0	1251.0	0	0	0
MA1487.1_shift3 (FOXE1) 
; oligos_8nt_mkv2_m24 versus MA1487.1 (FOXE1); m=9/49; ncol2=15; w=12; offset=-1; strand=D; shift=3; score=0.573761; ---cvyTAARyAAACAa
; cor=; Ncor=
a	0	0	0	54.0	288.0	37.0	191.0	664.0	664.0	664.0	0.0	664.0	664.0	664.0	0.0	664.0	521.0
c	0	0	0	289.0	381.0	298.0	0.0	15.0	57.0	0.0	324.0	10.0	8.0	0.0	664.0	0.0	84.0
g	0	0	0	165.0	283.0	38.0	0.0	30.0	58.0	228.0	0.0	0.0	0.0	0.0	0.0	3.0	123.0
t	0	0	0	155.0	0.0	366.0	664.0	0.0	194.0	0.0	340.0	0.0	0.0	0.0	0.0	0.0	142.0
MA0702.2_rc_shift5 (LMX1A_rc) 
; oligos_8nt_mkv2_m24 versus MA0702.2_rc (LMX1A_rc); m=10/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.560486; -----kTAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	827.0	0.0	7355.0	7355.0	0.0	0.0	7355.0	5133.0	0	0	0	0
c	0	0	0	0	0	1158.0	501.0	0.0	0.0	0.0	0.0	19.0	305.0	0	0	0	0
g	0	0	0	0	0	2558.0	102.0	0.0	50.0	9.0	0.0	31.0	2222.0	0	0	0	0
t	0	0	0	0	0	2812.0	7355.0	0.0	0.0	7355.0	7355.0	0.0	90.0	0	0	0	0
MA0715.1_rc_shift6 (PROP1_rc) 
; oligos_8nt_mkv2_m24 versus MA0715.1_rc (PROP1_rc); m=11/49; ncol2=11; w=10; offset=2; strand=R; shift=6; score=0.548943; ------TAATTwrATTA
; cor=; Ncor=
a	0	0	0	0	0	0	47.0	575.0	575.0	6.0	33.0	258.0	367.0	575.0	0.0	11.0	575.0
c	0	0	0	0	0	0	15.0	6.0	0.0	46.0	0.0	78.0	20.0	18.0	2.0	0.0	10.0
g	0	0	0	0	0	0	0.0	18.0	0.0	3.0	38.0	57.0	209.0	39.0	0.0	0.0	12.0
t	0	0	0	0	0	0	575.0	13.0	2.0	575.0	575.0	183.0	28.0	41.0	575.0	575.0	63.0
MA0846.1_shift2 (FOXC2) 
; oligos_8nt_mkv2_m24 versus MA0846.1 (FOXC2); m=12/49; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.541231; --wAwrTAAAYAww---
; cor=; Ncor=
a	0	0	8939.0	20456.0	11301.0	6418.0	2005.0	20456.0	20456.0	20456.0	31.0	20456.0	13296.0	10995.0	0	0	0
c	0	0	1279.0	1652.0	3476.0	440.0	3773.0	6759.0	344.0	105.0	14435.0	101.0	2087.0	3080.0	0	0	0
g	0	0	454.0	5093.0	3129.0	14038.0	321.0	87.0	81.0	279.0	68.0	328.0	1710.0	2649.0	0	0	0
t	0	0	11517.0	2080.0	9155.0	136.0	20456.0	122.0	107.0	242.0	6021.0	215.0	7160.0	9461.0	0	0	0
MA0851.1_shift0 (Foxj3) 
; oligos_8nt_mkv2_m24 versus MA0851.1 (Foxj3); m=13/49; ncol2=17; w=12; offset=-4; strand=D; shift=0; score=0.537628; hraarRTAAACAAwsmc
; cor=; Ncor=
a	27.0	34.0	48.0	51.0	35.0	30.0	1.0	91.0	96.0	99.0	0.0	99.0	79.0	57.0	22.0	27.0	24.0
c	26.0	13.0	19.0	13.0	13.0	1.0	2.0	8.0	2.0	0.0	81.0	0.0	7.0	9.0	34.0	27.0	39.0
g	21.0	31.0	16.0	17.0	33.0	68.0	0.0	0.0	0.0	0.0	0.0	0.0	6.0	7.0	26.0	24.0	17.0
t	26.0	22.0	17.0	19.0	20.0	0.0	97.0	0.0	3.0	1.0	18.0	1.0	9.0	27.0	18.0	22.0	19.0
MA0704.1_rc_shift5 (Lhx4_rc) 
; oligos_8nt_mkv2_m24 versus MA0704.1_rc (Lhx4_rc); m=14/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.518199; -----yTAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	275.0	135.0	2896.0	2896.0	155.0	255.0	2896.0	1161.0	0	0	0	0
c	0	0	0	0	0	857.0	316.0	57.0	0.0	0.0	309.0	0.0	495.0	0	0	0	0
g	0	0	0	0	0	449.0	39.0	446.0	0.0	0.0	428.0	912.0	817.0	0	0	0	0
t	0	0	0	0	0	1314.0	2896.0	0.0	0.0	2896.0	2896.0	217.0	422.0	0	0	0	0
MA0853.1_shift1 (Alx4) 
; oligos_8nt_mkv2_m24 versus MA0853.1 (Alx4); m=15/49; ncol2=17; w=12; offset=-3; strand=D; shift=1; score=0.516335; -cgcryTAATTArthas
; cor=; Ncor=
a	0	16.0	10.0	19.0	40.0	2.0	1.0	99.0	98.0	1.0	0.0	92.0	62.0	17.0	29.0	36.0	23.0
c	0	59.0	24.0	44.0	15.0	34.0	8.0	1.0	0.0	1.0	1.0	0.0	1.0	23.0	28.0	23.0	29.0
g	0	15.0	56.0	16.0	29.0	1.0	0.0	1.0	1.0	0.0	1.0	8.0	34.0	18.0	13.0	19.0	25.0
t	0	11.0	10.0	21.0	16.0	62.0	92.0	0.0	1.0	98.0	99.0	1.0	2.0	42.0	30.0	22.0	23.0
MA0674.1_shift5 (NKX6-1) 
; oligos_8nt_mkv2_m24 versus MA0674.1 (NKX6-1); m=16/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.512068; -----sYmATTAa----
; cor=; Ncor=
a	0	0	0	0	0	403.0	0.0	1407.0	2212.0	0.0	58.0	2212.0	1450.0	0	0	0	0
c	0	0	0	0	0	695.0	573.0	805.0	200.0	0.0	45.0	27.0	294.0	0	0	0	0
g	0	0	0	0	0	734.0	0.0	0.0	12.0	0.0	0.0	132.0	142.0	0	0	0	0
t	0	0	0	0	0	381.0	1640.0	195.0	40.0	2212.0	2212.0	17.0	327.0	0	0	0	0
MA1519.1_shift5 (LHX5) 
; oligos_8nt_mkv2_m24 versus MA1519.1 (LHX5); m=17/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.505037; -----sYAATTAa----
; cor=; Ncor=
a	0	0	0	0	0	394.0	0.0	7142.0	7142.0	0.0	0.0	7142.0	2749.0	0	0	0	0
c	0	0	0	0	0	3420.0	2093.0	187.0	0.0	0.0	144.0	0.0	1576.0	0	0	0	0
g	0	0	0	0	0	3721.0	0.0	0.0	0.0	0.0	28.0	160.0	1483.0	0	0	0	0
t	0	0	0	0	0	1215.0	5049.0	0.0	0.0	7142.0	7142.0	0.0	1333.0	0	0	0	0
MA0854.1_shift1 (Alx1) 
; oligos_8nt_mkv2_m24 versus MA0854.1 (Alx1); m=18/49; ncol2=17; w=12; offset=-3; strand=D; shift=1; score=0.498997; -cgmryTAATTArtymc
; cor=; Ncor=
a	0	19.0	7.0	38.0	43.0	5.0	1.0	98.0	98.0	1.0	0.0	92.0	53.0	15.0	23.0	39.0	24.0
c	0	44.0	21.0	33.0	9.0	40.0	7.0	0.0	0.0	1.0	1.0	0.0	2.0	21.0	32.0	31.0	29.0
g	0	17.0	65.0	14.0	31.0	2.0	0.0	1.0	1.0	0.0	0.0	7.0	40.0	11.0	16.0	12.0	23.0
t	0	20.0	7.0	15.0	17.0	53.0	92.0	0.0	1.0	98.0	98.0	1.0	5.0	53.0	29.0	17.0	24.0
MA0722.1_rc_shift5 (VAX1_rc) 
; oligos_8nt_mkv2_m24 versus MA0722.1_rc (VAX1_rc); m=19/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.497804; -----rTaATTAr----
; cor=; Ncor=
a	0	0	0	0	0	1433.0	398.0	5253.0	5253.0	133.0	302.0	5253.0	2479.0	0	0	0	0
c	0	0	0	0	0	933.0	1332.0	1951.0	213.0	46.0	189.0	101.0	455.0	0	0	0	0
g	0	0	0	0	0	1911.0	87.0	321.0	86.0	153.0	863.0	995.0	2775.0	0	0	0	0
t	0	0	0	0	0	977.0	5253.0	508.0	297.0	5253.0	5253.0	679.0	447.0	0	0	0	0
MA0032.2_shift2 (FOXC1) 
; oligos_8nt_mkv2_m24 versus MA0032.2 (FOXC1); m=20/49; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.497529; --wAwRTMAAyAw----
; cor=; Ncor=
a	0	0	6452.0	14324.0	7893.0	4858.0	2496.0	13117.0	18489.0	18489.0	122.0	18489.0	6702.0	0	0	0	0
c	0	0	772.0	728.0	2008.0	336.0	1652.0	5372.0	108.0	56.0	8782.0	27.0	1558.0	0	0	0	0
g	0	0	304.0	4165.0	2422.0	13631.0	390.0	21.0	0.0	141.0	165.0	433.0	1107.0	0	0	0	0
t	0	0	12038.0	1386.0	10596.0	51.0	18489.0	45.0	57.0	112.0	9708.0	184.0	11787.0	0	0	0	0
MA0725.1_rc_shift5 (VSX1_rc) 
; oligos_8nt_mkv2_m24 versus MA0725.1_rc (VSX1_rc); m=21/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.494216; -----vTAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	3732.0	1372.0	13572.0	13572.0	90.0	554.0	13572.0	5119.0	0	0	0	0
c	0	0	0	0	0	3658.0	3337.0	984.0	103.0	172.0	553.0	572.0	561.0	0	0	0	0
g	0	0	0	0	0	3555.0	516.0	761.0	199.0	154.0	626.0	3131.0	8453.0	0	0	0	0
t	0	0	0	0	0	2626.0	13572.0	898.0	172.0	13572.0	13572.0	1836.0	756.0	0	0	0	0
MA0845.1_shift2 (FOXB1) 
; oligos_8nt_mkv2_m24 versus MA0845.1 (FOXB1); m=22/49; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.494071; --wAwGTMAAyAt----
; cor=; Ncor=
a	0	0	2393.0	5343.0	1983.0	1159.0	180.0	4891.0	6841.0	6841.0	28.0	6841.0	1704.0	0	0	0	0
c	0	0	272.0	263.0	218.0	54.0	240.0	1950.0	213.0	47.0	2252.0	0.0	573.0	0	0	0	0
g	0	0	190.0	1498.0	409.0	6841.0	113.0	75.0	0.0	47.0	104.0	157.0	556.0	0	0	0	0
t	0	0	4448.0	561.0	4858.0	124.0	6841.0	73.0	381.0	216.0	4589.0	147.0	4008.0	0	0	0	0
MA1481.1_rc_shift5 (DRGX_rc) 
; oligos_8nt_mkv2_m24 versus MA1481.1_rc (DRGX_rc); m=23/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.490792; -----sTAATTrr----
; cor=; Ncor=
a	0	0	0	0	0	3105.0	144.0	14867.0	14867.0	0.0	0.0	8870.0	6687.0	0	0	0	0
c	0	0	0	0	0	3995.0	962.0	209.0	0.0	0.0	2037.0	1111.0	2692.0	0	0	0	0
g	0	0	0	0	0	4651.0	17.0	813.0	0.0	0.0	501.0	5997.0	8180.0	0	0	0	0
t	0	0	0	0	0	3117.0	14867.0	0.0	0.0	14867.0	14867.0	1079.0	1172.0	0	0	0	0
MA0726.1_rc_shift5 (VSX2_rc) 
; oligos_8nt_mkv2_m24 versus MA0726.1_rc (VSX2_rc); m=24/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.490778; -----cTAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	3387.0	1014.0	13809.0	13809.0	63.0	402.0	13809.0	4255.0	0	0	0	0
c	0	0	0	0	0	4288.0	2109.0	447.0	92.0	123.0	343.0	363.0	445.0	0	0	0	0
g	0	0	0	0	0	3243.0	321.0	567.0	186.0	124.0	397.0	2725.0	9554.0	0	0	0	0
t	0	0	0	0	0	2891.0	13809.0	626.0	118.0	13809.0	13809.0	1080.0	427.0	0	0	0	0
MA0075.3_shift5 (PRRX2) 
; oligos_8nt_mkv2_m24 versus MA0075.3 (PRRX2); m=25/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.490499; -----cyAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	778.0	122.0	6720.0	6720.0	0.0	0.0	6720.0	2291.0	0	0	0	0
c	0	0	0	0	0	6720.0	2008.0	29.0	0.0	0.0	0.0	1.0	1271.0	0	0	0	0
g	0	0	0	0	0	1613.0	131.0	3.0	0.0	0.0	0.0	399.0	1862.0	0	0	0	0
t	0	0	0	0	0	1933.0	4711.0	0.0	0.0	6720.0	6720.0	0.0	1295.0	0	0	0	0
MA0654.1_shift5 (ISX) 
; oligos_8nt_mkv2_m24 versus MA0654.1 (ISX); m=26/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.490408; -----yyAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	318.0	10.0	2065.0	2065.0	0.0	0.0	2065.0	770.0	0	0	0	0
c	0	0	0	0	0	863.0	1003.0	48.0	16.0	0.0	0.0	0.0	307.0	0	0	0	0
g	0	0	0	0	0	364.0	0.0	5.0	0.0	0.0	24.0	0.0	704.0	0	0	0	0
t	0	0	0	0	0	520.0	1061.0	24.0	10.0	2065.0	2065.0	49.0	283.0	0	0	0	0
MA0723.1_rc_shift5 (VAX2_rc) 
; oligos_8nt_mkv2_m24 versus MA0723.1_rc (VAX2_rc); m=27/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.486566; -----gTmATTAr----
; cor=; Ncor=
a	0	0	0	0	0	3069.0	562.0	14297.0	14297.0	218.0	565.0	14297.0	6482.0	0	0	0	0
c	0	0	0	0	0	2869.0	3818.0	5673.0	564.0	94.0	414.0	221.0	1384.0	0	0	0	0
g	0	0	0	0	0	5648.0	179.0	987.0	161.0	213.0	2781.0	2823.0	7816.0	0	0	0	0
t	0	0	0	0	0	2711.0	14297.0	1341.0	576.0	14297.0	14297.0	1410.0	921.0	0	0	0	0
MA0716.1_shift5 (PRRX1) 
; oligos_8nt_mkv2_m24 versus MA0716.1 (PRRX1); m=28/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.486009; -----yyAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	4132.0	2373.0	23897.0	23897.0	0.0	1264.0	23897.0	9498.0	0	0	0	0
c	0	0	0	0	0	9063.0	11122.0	1088.0	503.0	3.0	2302.0	644.0	4269.0	0	0	0	0
g	0	0	0	0	0	4339.0	1121.0	1776.0	202.0	0.0	1004.0	136.0	6366.0	0	0	0	0
t	0	0	0	0	0	6364.0	12775.0	810.0	209.0	23897.0	23897.0	1229.0	3765.0	0	0	0	0
MA0721.1_rc_shift5 (UNCX_rc) 
; oligos_8nt_mkv2_m24 versus MA0721.1_rc (UNCX_rc); m=29/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.485147; -----yTAATTrr----
; cor=; Ncor=
a	0	0	0	0	0	4810.0	3885.0	36926.0	36926.0	890.0	2629.0	20126.0	12871.0	0	0	0	0
c	0	0	0	0	0	10480.0	731.0	1782.0	117.0	420.0	4582.0	2086.0	5711.0	0	0	0	0
g	0	0	0	0	0	7825.0	2211.0	3958.0	806.0	1302.0	2540.0	16800.0	13363.0	0	0	0	0
t	0	0	0	0	0	13811.0	36926.0	3111.0	481.0	36926.0	36926.0	3975.0	4980.0	0	0	0	0
MA0614.1_shift5 (Foxj2) 
; oligos_8nt_mkv2_m24 versus MA0614.1 (Foxj2); m=30/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.481831; -----rTAAACAa----
; cor=; Ncor=
a	0	0	0	0	0	461.0	50.0	795.0	977.0	999.0	0.0	999.0	593.0	0	0	0	0
c	0	0	0	0	0	0.0	25.0	205.0	0.0	0.0	954.0	0.0	125.0	0	0	0	0
g	0	0	0	0	0	538.0	0.0	0.0	0.0	0.0	0.0	0.0	125.0	0	0	0	0
t	0	0	0	0	0	0.0	924.0	0.0	22.0	0.0	46.0	0.0	156.0	0	0	0	0
MA1577.1_shift5 (TLX2) 
; oligos_8nt_mkv2_m24 versus MA1577.1 (TLX2); m=31/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.480015; -----yyAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	997.0	1435.0	7799.0	7799.0	0.0	0.0	7799.0	2184.0	0	0	0	0
c	0	0	0	0	0	2572.0	7799.0	0.0	0.0	0.0	0.0	0.0	1323.0	0	0	0	0
g	0	0	0	0	0	1851.0	1112.0	80.0	0.0	0.0	0.0	0.0	3439.0	0	0	0	0
t	0	0	0	0	0	2379.0	8156.0	0.0	0.0	7799.0	7799.0	0.0	852.0	0	0	0	0
MA0720.1_shift5 (Shox2) 
; oligos_8nt_mkv2_m24 versus MA0720.1 (Shox2); m=32/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.479418; -----yyAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	2390.0	979.0	18179.0	18179.0	29.0	597.0	18179.0	6542.0	0	0	0	0
c	0	0	0	0	0	7695.0	9027.0	626.0	138.0	12.0	545.0	193.0	3021.0	0	0	0	0
g	0	0	0	0	0	3292.0	228.0	426.0	3.0	0.0	870.0	36.0	6337.0	0	0	0	0
t	0	0	0	0	0	4802.0	9152.0	766.0	79.0	18179.0	18179.0	895.0	2278.0	0	0	0	0
MA0675.1_shift5 (NKX6-2) 
; oligos_8nt_mkv2_m24 versus MA0675.1 (NKX6-2); m=33/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.478657; -----symATTAa----
; cor=; Ncor=
a	0	0	0	0	0	3761.0	1172.0	11354.0	18935.0	584.0	2468.0	18935.0	9971.0	0	0	0	0
c	0	0	0	0	0	6072.0	7831.0	7581.0	310.0	0.0	2233.0	370.0	3457.0	0	0	0	0
g	0	0	0	0	0	5228.0	814.0	1053.0	191.0	0.0	551.0	775.0	1660.0	0	0	0	0
t	0	0	0	0	0	3874.0	11104.0	2582.0	546.0	18935.0	18935.0	678.0	3846.0	0	0	0	0
MA0701.2_shift5 (LHX9) 
; oligos_8nt_mkv2_m24 versus MA0701.2 (LHX9); m=34/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.476452; -----CyAATTAr----
; cor=; Ncor=
a	0	0	0	0	0	390.0	0.0	6075.0	6075.0	0.0	0.0	6075.0	2261.0	0	0	0	0
c	0	0	0	0	0	6075.0	2093.0	505.0	0.0	0.0	0.0	0.0	1013.0	0	0	0	0
g	0	0	0	0	0	1056.0	0.0	0.0	0.0	0.0	170.0	305.0	1946.0	0	0	0	0
t	0	0	0	0	0	1219.0	3983.0	20.0	0.0	6075.0	6075.0	0.0	856.0	0	0	0	0
MA0612.2_rc_shift5 (EMX1_rc) 
; oligos_8nt_mkv2_m24 versus MA0612.2_rc (EMX1_rc); m=35/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.476022; -----sTAATTAs----
; cor=; Ncor=
a	0	0	0	0	0	1062.0	0.0	9544.0	9544.0	0.0	0.0	7281.0	1777.0	0	0	0	0
c	0	0	0	0	0	4516.0	0.0	933.0	0.0	0.0	0.0	0.0	3066.0	0	0	0	0
g	0	0	0	0	0	2633.0	0.0	0.0	0.0	0.0	1235.0	2263.0	3425.0	0	0	0	0
t	0	0	0	0	0	1333.0	9544.0	0.0	0.0	9544.0	9544.0	19.0	1276.0	0	0	0	0
MA0900.2_shift5 (HOXA2) 
; oligos_8nt_mkv2_m24 versus MA0900.2 (HOXA2); m=36/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.475984; -----sTMATTAs----
; cor=; Ncor=
a	0	0	0	0	0	8880.0	0.0	39674.0	56949.0	0.0	0.0	56949.0	10641.0	0	0	0	0
c	0	0	0	0	0	19452.0	3636.0	17275.0	0.0	0.0	0.0	0.0	16330.0	0	0	0	0
g	0	0	0	0	0	22686.0	0.0	290.0	0.0	0.0	0.0	2052.0	22246.0	0	0	0	0
t	0	0	0	0	0	5931.0	56949.0	0.0	0.0	56949.0	56949.0	0.0	7731.0	0	0	0	0
MA1489.1_shift5 (FOXN3) 
; oligos_8nt_mkv2_m24 versus MA1489.1 (FOXN3); m=37/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.475121; -----GTAAACAA----
; cor=; Ncor=
a	0	0	0	0	0	9.0	9.0	971.0	971.0	971.0	9.0	971.0	971.0	0	0	0	0
c	0	0	0	0	0	9.0	9.0	9.0	9.0	9.0	971.0	9.0	9.0	0	0	0	0
g	0	0	0	0	0	971.0	9.0	9.0	9.0	9.0	9.0	9.0	9.0	0	0	0	0
t	0	0	0	0	0	9.0	971.0	9.0	9.0	9.0	9.0	9.0	9.0	0	0	0	0
MA0132.2_shift5 (PDX1) 
; oligos_8nt_mkv2_m24 versus MA0132.2 (PDX1); m=38/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.474875; -----symATTAr----
; cor=; Ncor=
a	0	0	0	0	0	1483.0	292.0	4839.0	7130.0	0.0	0.0	7130.0	2181.0	0	0	0	0
c	0	0	0	0	0	2206.0	2469.0	2291.0	45.0	0.0	0.0	0.0	1216.0	0	0	0	0
g	0	0	0	0	0	2441.0	0.0	185.0	0.0	0.0	0.0	0.0	2881.0	0	0	0	0
t	0	0	0	0	0	999.0	4661.0	78.0	0.0	7130.0	7130.0	0.0	852.0	0	0	0	0
MA0630.1_shift5 (SHOX) 
; oligos_8nt_mkv2_m24 versus MA0630.1 (SHOX); m=39/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.473064; -----yTAATTrr----
; cor=; Ncor=
a	0	0	0	0	0	179.0	74.0	852.0	991.0	15.0	98.0	416.0	301.0	0	0	0	0
c	0	0	0	0	0	301.0	30.0	48.0	2.0	15.0	50.0	48.0	187.0	0	0	0	0
g	0	0	0	0	0	162.0	9.0	55.0	5.0	27.0	84.0	424.0	379.0	0	0	0	0
t	0	0	0	0	0	357.0	886.0	45.0	2.0	943.0	768.0	111.0	133.0	0	0	0	0
MA0613.1_shift5 (FOXG1) 
; oligos_8nt_mkv2_m24 versus MA0613.1 (FOXG1); m=40/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.470997; -----rTAAACAw----
; cor=; Ncor=
a	0	0	0	0	0	374.0	1.0	997.0	997.0	997.0	1.0	997.0	498.0	0	0	0	0
c	0	0	0	0	0	1.0	1.0	1.0	1.0	1.0	997.0	1.0	167.0	0	0	0	0
g	0	0	0	0	0	623.0	1.0	1.0	1.0	1.0	1.0	1.0	2.0	0	0	0	0
t	0	0	0	0	0	1.0	997.0	1.0	1.0	1.0	1.0	1.0	333.0	0	0	0	0
MA0885.1_shift5 (Dlx2) 
; oligos_8nt_mkv2_m24 versus MA0885.1 (Dlx2); m=41/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.468199; -----syAATTAw----
; cor=; Ncor=
a	0	0	0	0	0	3170.0	543.0	13749.0	13749.0	0.0	260.0	13749.0	3710.0	0	0	0	0
c	0	0	0	0	0	3565.0	7409.0	684.0	289.0	0.0	393.0	46.0	3277.0	0	0	0	0
g	0	0	0	0	0	4739.0	135.0	488.0	15.0	0.0	565.0	55.0	3065.0	0	0	0	0
t	0	0	0	0	0	2275.0	6340.0	524.0	179.0	13749.0	13749.0	579.0	3697.0	0	0	0	0
MA0717.1_rc_shift5 (RAX2_rc) 
; oligos_8nt_mkv2_m24 versus MA0717.1_rc (RAX2_rc); m=42/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.46763; -----yTAATTrr----
; cor=; Ncor=
a	0	0	0	0	0	5601.0	4258.0	38860.0	38860.0	1030.0	2421.0	19215.0	10666.0	0	0	0	0
c	0	0	0	0	0	12362.0	360.0	2513.0	125.0	757.0	4490.0	1688.0	7049.0	0	0	0	0
g	0	0	0	0	0	7487.0	2644.0	4232.0	738.0	1523.0	3060.0	19645.0	15810.0	0	0	0	0
t	0	0	0	0	0	13411.0	38860.0	2167.0	270.0	38860.0	38860.0	3558.0	5334.0	0	0	0	0
MA0033.2_shift5 (FOXL1) 
; oligos_8nt_mkv2_m24 versus MA0033.2 (FOXL1); m=43/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.463967; -----rTAAACA-----
; cor=; Ncor=
a	0	0	0	0	0	2102.0	10.0	4780.0	4780.0	4780.0	0.0	4780.0	0	0	0	0	0
c	0	0	0	0	0	13.0	416.0	628.0	38.0	82.0	3723.0	54.0	0	0	0	0	0
g	0	0	0	0	0	2678.0	0.0	57.0	0.0	50.0	0.0	0.0	0	0	0	0	0
t	0	0	0	0	0	140.0	4780.0	0.0	15.0	0.0	1057.0	17.0	0	0	0	0	0
MA0041.1_rc_shift7 (Foxd3_rc) 
; oligos_8nt_mkv2_m24 versus MA0041.1_rc (Foxd3_rc); m=44/49; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.446698; -------RAAhAAAYAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	35.0	40.0	34.0	12.0	32.0	46.0	47.0	1.0	42.0	22.0
c	0	0	0	0	0	0	0	0.0	4.0	0.0	21.0	10.0	0.0	0.0	34.0	0.0	0.0
g	0	0	0	0	0	0	0	12.0	2.0	7.0	0.0	0.0	0.0	0.0	0.0	4.0	1.0
t	0	0	0	0	0	0	0	0.0	1.0	6.0	14.0	5.0	1.0	0.0	12.0	1.0	24.0
MA0850.1_shift5 (FOXP3) 
; oligos_8nt_mkv2_m24 versus MA0850.1 (FOXP3); m=45/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.433706; -----rTAAACA-----
; cor=; Ncor=
a	0	0	0	0	0	74.0	20.0	211.0	211.0	211.0	0.0	211.0	0	0	0	0	0
c	0	0	0	0	0	0.0	52.0	0.0	0.0	15.0	211.0	0.0	0	0	0	0	0
g	0	0	0	0	0	137.0	0.0	0.0	9.0	49.0	32.0	18.0	0	0	0	0	0
t	0	0	0	0	0	0.0	211.0	31.0	8.0	0.0	39.0	0.0	0	0	0	0	0
MA0848.1_shift5 (FOXO4) 
; oligos_8nt_mkv2_m24 versus MA0848.1 (FOXO4); m=46/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.427366; -----GTAAACA-----
; cor=; Ncor=
a	0	0	0	0	0	1669.0	345.0	5378.0	5378.0	5378.0	58.0	5378.0	0	0	0	0	0
c	0	0	0	0	0	13.0	69.0	1259.0	146.0	0.0	5378.0	10.0	0	0	0	0	0
g	0	0	0	0	0	5378.0	123.0	32.0	19.0	90.0	33.0	10.0	0	0	0	0	0
t	0	0	0	0	0	0.0	5378.0	20.0	20.0	10.0	958.0	40.0	0	0	0	0	0
MA0847.2_shift0 (FOXD2) 
; oligos_8nt_mkv2_m24 versus MA0847.2 (FOXD2); m=47/49; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.425834; sywAwRTAAAYAw----
; cor=; Ncor=
a	1404.0	865.0	2183.0	5995.0	2482.0	2608.0	148.0	5995.0	5995.0	5995.0	0.0	5995.0	2400.0	0	0	0	0
c	1834.0	2406.0	36.0	92.0	1208.0	101.0	1005.0	658.0	209.0	0.0	5995.0	53.0	1003.0	0	0	0	0
g	2314.0	309.0	3.0	1294.0	752.0	5995.0	0.0	11.0	17.0	25.0	0.0	125.0	515.0	0	0	0	0
t	442.0	3589.0	3812.0	23.0	1553.0	6.0	5995.0	11.0	11.0	33.0	2297.0	209.0	2076.0	0	0	0	0
MA0042.2_shift5 (FOXI1) 
; oligos_8nt_mkv2_m24 versus MA0042.2 (FOXI1); m=48/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.423589; -----GTAAACA-----
; cor=; Ncor=
a	0	0	0	0	0	618.0	74.0	5175.0	5175.0	5175.0	157.0	5175.0	0	0	0	0	0
c	0	0	0	0	0	39.0	60.0	540.0	23.0	23.0	5175.0	12.0	0	0	0	0	0
g	0	0	0	0	0	5175.0	35.0	37.0	0.0	29.0	48.0	25.0	0	0	0	0	0
t	0	0	0	0	0	0.0	5175.0	0.0	0.0	66.0	810.0	0.0	0	0	0	0	0
MA0040.1_rc_shift8 (Foxq1_rc) 
; oligos_8nt_mkv2_m24 versus MA0040.1_rc (Foxq1_rc); m=49/49; ncol2=11; w=8; offset=4; strand=R; shift=8; score=0.411168; --------wATAAACAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	9.0	13.0	0.0	18.0	18.0	18.0	0.0	15.0	11.0
c	0	0	0	0	0	0	0	0	3.0	4.0	1.0	0.0	0.0	0.0	18.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	2.0
t	0	0	0	0	0	0	0	0	6.0	0.0	17.0	0.0	0.0	0.0	0.0	3.0	5.0