Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m25/peak-motifs_oligos_8nt_mkv2_m25.tf
		file1	1	12	6
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv2_m25 MA0499.2 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 MYOD1 0.786 0.726 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv2_m25 MA0100.3 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 MYB 0.832 0.694 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m25 MA0745.2 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 SNAI2 0.743 0.686 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv2_m25 MA0667.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 MYF6 0.798 0.665 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m25 MA1559.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 SNAI3 0.783 0.652 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA0832.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Tcf21 0.744 0.637 12 14 12 14 0.8571 1.0000 0.8571 D 0
oligos_8nt_mkv2_m25 MA0665.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 MSC 0.764 0.637 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m25 MA0816.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Ascl2 0.761 0.634 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA0521.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Tcf12 0.822 0.632 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_8nt_mkv2_m25 MA1472.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 BHLHA15(var.2) 0.757 0.630 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA1619.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Ptf1a(var.2) 0.740 0.626 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_8nt_mkv2_m25 MA1641.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 MYF5 0.738 0.625 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_8nt_mkv2_m25 MA1467.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 ATOH1(var.2) 0.749 0.624 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA0500.2 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 MYOG 0.735 0.622 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv2_m25 MA0691.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 TFAP4 0.738 0.615 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA0820.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 FIGLA 0.731 0.609 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m25 MA1620.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Ptf1a(var.3) 0.719 0.608 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv2_m25 MA1542.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 OSR1 0.716 0.597 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m25 MA1100.2 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 ASCL1 0.712 0.593 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA1635.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 BHLHE22(var.2) 0.702 0.585 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m25 MA0744.2 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 SCRT2 0.749 0.562 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv2_m25 MA1618.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Ptf1a 0.706 0.555 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_8nt_mkv2_m25 MA0743.2 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 SCRT1 0.734 0.551 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv2_m25 MA1647.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 PRDM4 0.783 0.503 12 11 9 14 0.6429 0.7500 0.8182 R -2
oligos_8nt_mkv2_m25 MA0869.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Sox11 0.750 0.441 12 15 10 17 0.5882 0.8333 0.6667 D 2
oligos_8nt_mkv2_m25 MA0087.1 oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25 Sox5 0.742 0.433 12 7 7 12 0.5833 0.5833 1.0000 R 1 
 Host name	pedagogix
 Job started	2020-04-13.204610
 Job done	2020-04-13.204634
 Seconds	3.38
	user	3.38
	system	0.43
	cuser	19.41
;	csystem	1.2