One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m28/peak-motifs_oligos_8nt_mkv2_m28.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m28/peak-motifs_oligos_8nt_mkv2_m28_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m28_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_8nt_mkv2_m28_shift0 (oligos_8nt_mkv2_m28oligos_8nt_mkv2_m28) |
 |
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; oligos_8nt_mkv2_m28 (oligos_8nt_mkv2_m28oligos_8nt_mkv2_m28); m=0 (reference); ncol1=12; shift=0; ncol=12; hsTCAAGTARvw
; Alignment reference
a 2 0 0 0 7 7 0 0 7 5 3 2
c 3 4 0 6 0 0 0 0 0 0 2 1
g 0 3 0 0 0 0 7 0 0 2 2 1
t 2 0 7 1 0 0 0 7 0 0 0 3
|
| MA0673.1_rc_shift1 (NKX2-8_rc) |
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; oligos_8nt_mkv2_m28 versus MA0673.1_rc (NKX2-8_rc); m=1/1; ncol2=9; w=9; offset=1; strand=R; shift=1; score=0.542685; -yTsRAGTGs--
; cor=; Ncor=
a 0 811.0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0
c 0 2593.0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0
g 0 1964.0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0
t 0 3194.0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0
|