One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m6/peak-motifs_oligos_8nt_mkv2_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m6/peak-motifs_oligos_8nt_mkv2_m6_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m6_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m6_shift0 (oligos_8nt_mkv2_m6oligos_8nt_mkv2_m6)
; oligos_8nt_mkv2_m6 (oligos_8nt_mkv2_m6oligos_8nt_mkv2_m6); m=0 (reference); ncol1=18; shift=0; ncol=18; CrTGRAAAATGAGAAAwr ; Alignment reference a 4 66 0 4 27 102 102 101 100 2 2 96 1 100 101 100 27 68 c 89 3 13 2 2 0 0 0 1 1 0 0 1 1 1 0 23 1 g 2 30 2 96 73 0 0 0 0 0 99 2 85 1 0 0 0 32 t 7 3 87 0 0 0 0 1 1 99 1 4 15 0 0 2 52 1

MA0606.1_rc_shift0 (NFAT5_rc)
; oligos_8nt_mkv2_m6 versus MA0606.1_rc (NFAT5_rc); m=1/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.489362; wrTGGAAAat-------- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 0 0 0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0 0 0 0 0

MA1525.1_shift0 (NFATC4)
; oligos_8nt_mkv2_m6 versus MA1525.1 (NFATC4); m=2/4; ncol2=10; w=10; offset=0; strand=D; shift=0; score=0.467277; aryGGAAAmw-------- ; cor=; Ncor= a 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 0 0 0 0 c 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 0 0 0 0 g 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 0 0 0 0 t 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0 0 0 0 0

MA0625.1_rc_shift0 (NFATC3_rc)
; oligos_8nt_mkv2_m6 versus MA0625.1_rc (NFATC3_rc); m=3/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.461271; aryGGAAAaw-------- ; cor=; Ncor= a 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 0 0 0 0 c 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 0 0 0 0 g 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 0 0 0 0 t 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0 0 0 0 0

MA0624.1_rc_shift0 (NFATC1_rc)
; oligos_8nt_mkv2_m6 versus MA0624.1_rc (NFATC1_rc); m=4/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.44385; aryGGAAaaw-------- ; cor=; Ncor= a 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 0 0 0 0 c 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 0 0 0 0 g 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 0 0 0 0 t 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m6_shift0 (oligos_8nt_mkv2_m6oligos_8nt_mkv2_m6)				; oligos_8nt_mkv2_m6 (oligos_8nt_mkv2_m6oligos_8nt_mkv2_m6); m=0 (reference); ncol1=18; shift=0; ncol=18; CrTGRAAAATGAGAAAwr ; Alignment reference a 4 66 0 4 27 102 102 101 100 2 2 96 1 100 101 100 27 68 c 89 3 13 2 2 0 0 0 1 1 0 0 1 1 1 0 23 1 g 2 30 2 96 73 0 0 0 0 0 99 2 85 1 0 0 0 32 t 7 3 87 0 0 0 0 1 1 99 1 4 15 0 0 2 52 1
MA0606.1_rc_shift0 (NFAT5_rc)				; oligos_8nt_mkv2_m6 versus MA0606.1_rc (NFAT5_rc); m=1/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.489362; wrTGGAAAat-------- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 0 0 0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0 0 0 0 0
MA1525.1_shift0 (NFATC4)				; oligos_8nt_mkv2_m6 versus MA1525.1 (NFATC4); m=2/4; ncol2=10; w=10; offset=0; strand=D; shift=0; score=0.467277; aryGGAAAmw-------- ; cor=; Ncor= a 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 0 0 0 0 c 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 0 0 0 0 g 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 0 0 0 0 t 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0 0 0 0 0
MA0625.1_rc_shift0 (NFATC3_rc)				; oligos_8nt_mkv2_m6 versus MA0625.1_rc (NFATC3_rc); m=3/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.461271; aryGGAAAaw-------- ; cor=; Ncor= a 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 0 0 0 0 c 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 0 0 0 0 g 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 0 0 0 0 t 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0 0 0 0 0
MA0624.1_rc_shift0 (NFATC1_rc)				; oligos_8nt_mkv2_m6 versus MA0624.1_rc (NFATC1_rc); m=4/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.44385; aryGGAAaaw-------- ; cor=; Ncor= a 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 0 0 0 0 c 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 0 0 0 0 g 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 0 0 0 0 t 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0 0 0 0 0