Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7.tf
 Output files
	alignments_1ton	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m7/peak-motifs_oligos_8nt_mkv2_m7.tf
		file1	1	12	17
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv2_m7 MA1648.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TCF12(var.2) 0.912 0.836 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv2_m7 MA0522.3 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TCF3 0.904 0.829 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv2_m7 MA1631.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 ASCL1(var.2) 0.892 0.823 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv2_m7 MA0830.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TCF4 0.871 0.804 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv2_m7 MA0103.3 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 ZEB1 0.841 0.771 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_8nt_mkv2_m7 MA1558.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 SNAI1 0.875 0.729 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m7 MA1559.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 SNAI3 0.836 0.697 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m7 MA0745.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 SNAI2 0.750 0.693 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv2_m7 MA0820.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 FIGLA 0.817 0.681 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m7 MA0499.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 MYOD1 0.720 0.664 12 13 12 13 0.9231 1.0000 0.9231 R 0
oligos_8nt_mkv2_m7 MA0816.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Ascl2 0.789 0.657 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m7 MA1621.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Rbpjl 0.766 0.657 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_8nt_mkv2_m7 MA1628.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Zic1::Zic2 0.847 0.652 12 11 10 13 0.7692 0.8333 0.9091 D -1
oligos_8nt_mkv2_m7 MA0059.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 MAX::MYC 0.701 0.642 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_8nt_mkv2_m7 MA1620.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Ptf1a(var.3) 0.757 0.640 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv2_m7 MA1100.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 ASCL1 0.764 0.637 12 10 10 12 0.8333 0.8333 1.0000 D 2
oligos_8nt_mkv2_m7 MA1585.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 ZKSCAN1 0.743 0.619 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_8nt_mkv2_m7 MA0696.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 ZIC1 0.721 0.618 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_8nt_mkv2_m7 MA1629.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Zic2 0.838 0.615 12 14 11 15 0.7333 0.9167 0.7857 D -3
oligos_8nt_mkv2_m7 MA0048.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 NHLH1 0.727 0.606 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_8nt_mkv2_m7 MA0500.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 MYOG 0.710 0.601 12 12 11 13 0.8462 0.9167 0.9167 R 1
oligos_8nt_mkv2_m7 MA0697.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 ZIC3 0.703 0.562 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_8nt_mkv2_m7 MA0744.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 SCRT2 0.735 0.551 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv2_m7 MA0521.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Tcf12 0.715 0.550 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_8nt_mkv2_m7 MA0743.2 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 SCRT1 0.732 0.549 12 16 12 16 0.7500 1.0000 0.7500 D -3
oligos_8nt_mkv2_m7 MA0622.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 Mlxip 0.708 0.472 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_8nt_mkv2_m7 MA0807.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TBX5 0.857 0.462 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv2_m7 MA0806.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TBX4 0.850 0.458 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv2_m7 MA1567.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TBX6 0.750 0.428 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv2_m7 MA0803.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TBX15 0.785 0.423 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv2_m7 MA0801.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 MGA 0.776 0.418 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv2_m7 MA0805.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TBX1 0.769 0.414 12 8 7 13 0.5385 0.5833 0.8750 D 5
oligos_8nt_mkv2_m7 MA1566.1 oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7 TBX3 0.711 0.407 12 10 8 14 0.5714 0.6667 0.8000 D 4 
 Host name	pedagogix
 Job started	2020-04-13.204130
 Job done	2020-04-13.204211
 Seconds	6.06
	user	6.07
	system	0.7
	cuser	32.3
;	csystem	1.91