One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m9/peak-motifs_oligos_8nt_mkv2_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_motifs/oligos_8nt_mkv2_m9/peak-motifs_oligos_8nt_mkv2_m9_vs_db_jaspar_core_nonredundant_vertebrates
One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m9_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_8nt_mkv2_m9_shift0 (oligos_8nt_mkv2_m9oligos_8nt_mkv2_m9) |
 |
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; oligos_8nt_mkv2_m9 (oligos_8nt_mkv2_m9oligos_8nt_mkv2_m9); m=0 (reference); ncol1=12; shift=0; ncol=12; ayGTTTTTCAsK
; Alignment reference
a 51 4 20 1 2 1 0 3 0 95 8 1
c 7 52 1 0 0 1 2 0 94 1 29 3
g 19 5 77 0 1 0 0 0 0 0 47 27
t 23 39 2 99 97 98 98 97 6 4 16 69
|
| MA0606.1_shift2 (NFAT5) |
 |
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; oligos_8nt_mkv2_m9 versus MA0606.1 (NFAT5); m=1/2; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.593243; --atTTTCCAyw
; cor=; Ncor=
a 0 0 371.0 176.0 0.0 0.0 89.0 0.0 0.0 831.0 124.0 268.0
c 0 0 210.0 88.0 0.0 0.0 84.0 915.0 826.0 84.0 287.0 163.0
g 0 0 210.0 88.0 0.0 0.0 0.0 0.0 85.0 0.0 41.0 248.0
t 0 0 210.0 649.0 1000.0 1000.0 827.0 85.0 89.0 85.0 548.0 322.0
|
| MA0152.1_shift3 (NFATC2) |
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; oligos_8nt_mkv2_m9 versus MA0152.1 (NFATC2); m=2/2; ncol2=7; w=7; offset=3; strand=D; shift=3; score=0.446461; ---TTTTCCA--
; cor=; Ncor=
a 0 0 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0
c 0 0 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0
g 0 0 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0
t 0 0 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0
|