One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 Myogenin_Rep3_motifs50/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o Myogenin_Rep3_motifs50/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_nonredundant_vertebrates.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift0 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift0 (oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3 (oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3); m=0 (reference); ncol1=14; shift=0; ncol=14; hmarCAGCTGTCwb ; Alignment reference a 10 12 20 23 0 36 0 1 0 0 2 0 10 4 c 9 11 8 1 36 0 1 34 0 0 3 25 5 14 g 7 7 5 10 0 0 35 1 0 36 1 4 7 9 t 10 6 3 2 0 0 0 0 36 0 30 7 14 9

MA0832.1_rc_shift0 (Tcf21_rc)
; oligos_6nt_mkv2_m3 versus MA0832.1_rc (Tcf21_rc); m=1/36; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.896496; ryAACAGCTGTTry ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0

MA1641.1_shift1 (MYF5)
; oligos_6nt_mkv2_m3 versus MA1641.1 (MYF5); m=2/36; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.821378; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift1 (Ptf1a(var.2))
; oligos_6nt_mkv2_m3 versus MA1619.1 (Ptf1a(var.2)); m=3/36; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.811646; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1485.1_shift0 (FERD3L)
; oligos_6nt_mkv2_m3 versus MA1485.1 (FERD3L); m=4/36; ncol2=14; w=14; offset=0; strand=D; shift=0; score= 0.8046; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0

MA1621.1_shift0 (Rbpjl)
; oligos_6nt_mkv2_m3 versus MA1621.1 (Rbpjl); m=5/36; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.803541; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_6nt_mkv2_m3 versus MA0500.2_rc (MYOG_rc); m=6/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.775788; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0499.2_shift1 (MYOD1)
; oligos_6nt_mkv2_m3 versus MA0499.2 (MYOD1); m=7/36; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.773892; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_6nt_mkv2_m3 versus MA1618.1_rc (Ptf1a_rc); m=8/36; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.753933; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; oligos_6nt_mkv2_m3 versus MA0521.1_rc (Tcf12_rc); m=9/36; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.725763; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_6nt_mkv2_m3 versus MA1467.1 (ATOH1(var.2)); m=10/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.700834; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0745.2_shift1 (SNAI2)
; oligos_6nt_mkv2_m3 versus MA0745.2 (SNAI2); m=11/36; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.698772; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0

MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv2_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.697995; -rmaCAGGTGtky- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; oligos_6nt_mkv2_m3 versus MA0796.1_rc (TGIF1_rc); m=13/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.676259; -TGACAGCTGTCA- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0

MA1571.1_rc_shift1 (TGIF2LX_rc)
; oligos_6nt_mkv2_m3 versus MA1571.1_rc (TGIF2LX_rc); m=14/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.674371; -TGACAgcTGTCA- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA1123.2_shift0 (TWIST1)
; oligos_6nt_mkv2_m3 versus MA1123.2 (TWIST1); m=15/36; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.666466; awwCCAGATGtbt- ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_6nt_mkv2_m3 versus MA1472.1 (BHLHA15(var.2)); m=16/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.665255; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; oligos_6nt_mkv2_m3 versus MA0665.1_rc (MSC_rc); m=17/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.663453; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA1572.1_rc_shift1 (TGIF2LY_rc)
; oligos_6nt_mkv2_m3 versus MA1572.1_rc (TGIF2LY_rc); m=18/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.660823; -TGACAgcTGTCA- ; cor=; Ncor= a 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; oligos_6nt_mkv2_m3 versus MA0797.1_rc (TGIF2_rc); m=19/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.660534; -TGACAsCTGTCA- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0

MA0667.1_shift2 (MYF6)
; oligos_6nt_mkv2_m3 versus MA0667.1 (MYF6); m=20/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.64302; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_6nt_mkv2_m3 versus MA0816.1 (Ascl2); m=21/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.63897; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0691.1_shift2 (TFAP4)
; oligos_6nt_mkv2_m3 versus MA0691.1 (TFAP4); m=22/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.638611; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; oligos_6nt_mkv2_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.630392; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0

MA0783.1_shift1 (PKNOX2)
; oligos_6nt_mkv2_m3 versus MA0783.1 (PKNOX2); m=24/36; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.626524; -TGACAGsTGTCA- ; cor=; Ncor= a 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA0091.1_shift0 (TAL1::TCF3)
; oligos_6nt_mkv2_m3 versus MA0091.1 (TAL1::TCF3); m=25/36; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.626461; mgAmCAKMTGkT-- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0

MA1100.2_shift2 (ASCL1)
; oligos_6nt_mkv2_m3 versus MA1100.2 (ASCL1); m=26/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.618571; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0048.2_shift2 (NHLH1)
; oligos_6nt_mkv2_m3 versus MA0048.2 (NHLH1); m=27/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.567837; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_6nt_mkv2_m3 versus MA0820.1 (FIGLA); m=28/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.565892; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA1638.1_shift2 (HAND2)
; oligos_6nt_mkv2_m3 versus MA1638.1 (HAND2); m=29/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.514735; --amCAGATGby-- ; cor=; Ncor= a 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0

MA1570.1_shift2 (TFAP4(var.2))
; oligos_6nt_mkv2_m3 versus MA1570.1 (TFAP4(var.2)); m=30/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.506733; --ahCAyrTGkt-- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0

MA1559.1_rc_shift2 (SNAI3_rc)
; oligos_6nt_mkv2_m3 versus MA1559.1_rc (SNAI3_rc); m=31/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.505447; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0

MA0100.3_shift2 (MYB)
; oligos_6nt_mkv2_m3 versus MA0100.3 (MYB); m=32/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.50294; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0

MA1558.1_rc_shift2 (SNAI1_rc)
; oligos_6nt_mkv2_m3 versus MA1558.1_rc (SNAI1_rc); m=33/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.500774; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; oligos_6nt_mkv2_m3 versus MA0774.1_rc (MEIS2_rc); m=34/36; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.45998; ------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0

MA0775.1_rc_shift6 (MEIS3_rc)
; oligos_6nt_mkv2_m3 versus MA0775.1_rc (MEIS3_rc); m=35/36; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.437753; ------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0

MA0498.2_rc_shift7 (MEIS1_rc)
; oligos_6nt_mkv2_m3 versus MA0498.2_rc (MEIS1_rc); m=36/36; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.40662; -------cTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m7_shift3 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m7_shift3 (oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7)
; oligos_8nt_mkv2_m7 (oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7); m=0 (reference); ncol1=12; shift=3; ncol=16; ---rmAGCAGGTGst- ; Alignment reference a 0 0 0 8 5 16 0 0 15 0 0 0 0 2 2 0 c 0 0 0 3 8 1 0 16 1 0 0 1 1 7 4 0 g 0 0 0 5 3 0 17 0 1 17 17 0 16 5 1 0 t 0 0 0 1 1 0 0 1 0 0 0 16 0 3 10 0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_8nt_mkv2_m7 versus MA1648.1_rc (TCF12(var.2)_rc); m=1/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score= 0.8364; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_8nt_mkv2_m7 versus MA0522.3_rc (TCF3_rc); m=2/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.828613; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_8nt_mkv2_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.823048; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_8nt_mkv2_m7 versus MA0830.2_rc (TCF4_rc); m=4/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.804376; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_8nt_mkv2_m7 versus MA0103.3_rc (ZEB1_rc); m=5/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.771244; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1558.1_shift5 (SNAI1)
; oligos_8nt_mkv2_m7 versus MA1558.1 (SNAI1); m=6/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.729222; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv2_m7 versus MA1559.1 (SNAI3); m=7/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.696687; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv2_m7 versus MA0745.2_rc (SNAI2_rc); m=8/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.692592; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv2_m7 versus MA0820.1_rc (FIGLA_rc); m=9/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.681132; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv2_m7 versus MA0499.2_rc (MYOD1_rc); m=10/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.664289; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA0816.1_rc_shift5 (Ascl2_rc)
; oligos_8nt_mkv2_m7 versus MA0816.1_rc (Ascl2_rc); m=11/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.657218; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_8nt_mkv2_m7 versus MA1621.1_rc (Rbpjl_rc); m=12/33; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.656642; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1628.1_shift2 (Zic1::Zic2)
; oligos_8nt_mkv2_m7 versus MA1628.1 (Zic1::Zic2); m=13/33; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.651814; --cvCAGCAGGsr--- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0

MA0059.1_shift4 (MAX::MYC)
; oligos_8nt_mkv2_m7 versus MA0059.1 (MAX::MYC); m=14/33; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.642348; ----rAsCACGTGGt- ; cor=; Ncor= a 0 0 0 0 7.0 15.0 2.0 1.0 21.0 0.0 1.0 0.0 0.0 1.0 3.0 0 c 0 0 0 0 1.0 1.0 9.0 20.0 0.0 20.0 0.0 1.0 0.0 1.0 5.0 0 g 0 0 0 0 9.0 4.0 9.0 0.0 0.0 0.0 20.0 0.0 21.0 18.0 0.0 0 t 0 0 0 0 4.0 1.0 1.0 0.0 0.0 1.0 0.0 20.0 0.0 1.0 13.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv2_m7 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/33; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.640232; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv2_m7 versus MA1100.2 (ASCL1); m=16/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.637082; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA1585.1_shift3 (ZKSCAN1)
; oligos_8nt_mkv2_m7 versus MA1585.1 (ZKSCAN1); m=17/33; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.619052; ---AyAGTAGGtg--- ; cor=; Ncor= a 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 0 0 0 c 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 0 0 0 g 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 0 0 0 t 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0 0 0 0

MA0696.1_rc_shift2 (ZIC1_rc)
; oligos_8nt_mkv2_m7 versus MA0696.1_rc (ZIC1_rc); m=18/33; ncol2=14; w=12; offset=-1; strand=R; shift=2; score=0.618373; --CrCAGCrGGGGGTc ; cor=; Ncor= a 0 0 2725.0 16190.0 1.0 27084.0 6735.0 14.0 10313.0 14.0 7.0 927.0 281.0 125.0 23.0 8960.0 c 0 0 34431.0 1690.0 34649.0 5531.0 439.0 31995.0 0.0 10.0 4.0 327.0 204.0 58.0 7408.0 25702.0 g 0 0 520.0 7693.0 24.0 1757.0 27426.0 45.0 18412.0 29532.0 29399.0 25527.0 29217.0 28949.0 2660.0 3934.0 t 0 0 35.0 3121.0 73.0 1215.0 23.0 2156.0 22.0 185.0 0.0 2606.0 1264.0 836.0 22722.0 1113.0

MA1629.1_shift0 (Zic2)
; oligos_8nt_mkv2_m7 versus MA1629.1 (Zic2); m=19/33; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.614544; mkCaCAGCAGGrrg-- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0

MA0048.2_rc_shift5 (NHLH1_rc)
; oligos_8nt_mkv2_m7 versus MA0048.2_rc (NHLH1_rc); m=20/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.605599; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv2_m7 versus MA0500.2_rc (MYOG_rc); m=21/33; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.600879; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0697.1_rc_shift1 (ZIC3_rc)
; oligos_8nt_mkv2_m7 versus MA0697.1_rc (ZIC3_rc); m=22/33; ncol2=15; w=12; offset=-2; strand=R; shift=1; score=0.562478; -dCrCaGCRGGGGGTc ; cor=; Ncor= a 0 53.0 23.0 74.0 3.0 163.0 29.0 2.0 61.0 0.0 0.0 19.0 7.0 4.0 0.0 69.0 c 0 13.0 214.0 13.0 225.0 53.0 6.0 217.0 0.0 0.0 0.0 0.0 3.0 0.0 43.0 163.0 g 0 79.0 2.0 89.0 0.0 26.0 178.0 5.0 142.0 206.0 209.0 188.0 204.0 203.0 32.0 50.0 t 0 56.0 3.0 24.0 3.0 18.0 4.0 22.0 0.0 0.0 0.0 22.0 7.0 7.0 163.0 20.0

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv2_m7 versus MA0744.2 (SCRT2); m=23/33; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.551245; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv2_m7 versus MA0521.1 (Tcf12); m=24/33; ncol2=11; w=10; offset=2; strand=D; shift=5; score=0.550149; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv2_m7 versus MA0743.2 (SCRT1); m=25/33; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.54903; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0622.1_shift6 (Mlxip)
; oligos_8nt_mkv2_m7 versus MA0622.1 (Mlxip); m=26/33; ncol2=8; w=8; offset=3; strand=D; shift=6; score=0.472104; ------bCACGTGk-- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0

MA0807.1_shift8 (TBX5)
; oligos_8nt_mkv2_m7 versus MA0807.1 (TBX5); m=27/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.461638; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0806.1_shift8 (TBX4)
; oligos_8nt_mkv2_m7 versus MA0806.1 (TBX4); m=28/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.457829; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA1567.1_shift7 (TBX6)
; oligos_8nt_mkv2_m7 versus MA1567.1 (TBX6); m=29/33; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.428428; -------ragGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0

MA0803.1_shift8 (TBX15)
; oligos_8nt_mkv2_m7 versus MA0803.1 (TBX15); m=30/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.422932; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0801.1_shift8 (MGA)
; oligos_8nt_mkv2_m7 versus MA0801.1 (MGA); m=31/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.418054; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0

MA0805.1_shift8 (TBX1)
; oligos_8nt_mkv2_m7 versus MA0805.1 (TBX1); m=32/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.414274; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA1566.1_shift7 (TBX3)
; oligos_8nt_mkv2_m7 versus MA1566.1 (TBX3); m=33/33; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.406554; -------ragGTGTsa ; cor=; Ncor= a 0 0 0 0 0 0 0 644.0 2544.0 427.0 6.0 16.0 0.0 115.0 170.0 2544.0 c 0 0 0 0 0 0 0 399.0 481.0 862.0 45.0 735.0 0.0 634.0 1471.0 410.0 g 0 0 0 0 0 0 0 1003.0 1207.0 2544.0 2544.0 0.0 2544.0 155.0 2544.0 947.0 t 0 0 0 0 0 0 0 497.0 760.0 302.0 0.0 2544.0 0.0 2544.0 1112.0 484.0

One-to-n matrix alignment; reference matrix: dyads_m3_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m3_shift0 (dyads_m3dyads_m3)
; dyads_m3 (dyads_m3dyads_m3); m=0 (reference); ncol1=15; shift=0; ncol=15; rmArCAGCTGTCwyy ; Alignment reference a 8 6 20 13 0 22 0 1 0 0 0 0 7 3 5 c 3 10 2 1 22 0 1 20 0 0 2 17 5 9 7 g 6 4 0 7 0 0 21 1 0 22 0 3 2 4 4 t 5 2 0 1 0 0 0 0 22 0 20 2 8 6 6

MA0832.1_rc_shift0 (Tcf21_rc)
; dyads_m3 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.82518; ryAACAGCTGTTry- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift0 (FERD3L)
; dyads_m3 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.747264; GyrmCAGCTGTyAC- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA1641.1_rc_shift1 (MYF5_rc)
; dyads_m3 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.727563; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m3 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.720817; svmaCACCTGtsyc- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1619.1_shift1 (Ptf1a(var.2))
; dyads_m3 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.716077; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0499.2_shift1 (MYOD1)
; dyads_m3 versus MA0499.2 (MYOD1); m=6/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.706549; -cwgCACCTGTymy- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0500.2_rc_shift1 (MYOG_rc)
; dyads_m3 versus MA0500.2_rc (MYOG_rc); m=7/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.690954; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; dyads_m3 versus MA1618.1_rc (Ptf1a_rc); m=8/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.690205; dmaaCATCTGtkh-- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; dyads_m3 versus MA0521.1_rc (Tcf12_rc); m=9/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.650243; -cwsCAGCTGYy--- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; dyads_m3 versus MA1467.1 (ATOH1(var.2)); m=10/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.647487; --AACAGCTGTY--- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0745.2_shift1 (SNAI2)
; dyads_m3 versus MA0745.2 (SNAI2); m=11/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.625494; -aygCACCTGTmry- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)
; dyads_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.621109; -rmaCAGGTGtky-- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; dyads_m3 versus MA0665.1_rc (MSC_rc); m=13/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.613156; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; dyads_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.602962; --avCAGCTGyy--- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0667.1_shift2 (MYF6)
; dyads_m3 versus MA0667.1 (MYF6); m=15/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.597259; --AACArCTGTY--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; dyads_m3 versus MA0796.1_rc (TGIF1_rc); m=16/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.587159; -TGACAGCTGTCA-- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m3 versus MA0816.1 (Ascl2); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.586559; --arCAGCTGyy--- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0091.1_shift0 (TAL1::TCF3)
; dyads_m3 versus MA0091.1 (TAL1::TCF3); m=18/29; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.585506; mgAmCAKMTGkT--- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA1571.1_rc_shift1 (TGIF2LX_rc)
; dyads_m3 versus MA1571.1_rc (TGIF2LX_rc); m=19/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.585441; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0691.1_shift2 (TFAP4)
; dyads_m3 versus MA0691.1 (TFAP4); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.581097; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; dyads_m3 versus MA0797.1_rc (TGIF2_rc); m=21/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.574553; -TGACAsCTGTCA-- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_shift1 (TGIF2LY)
; dyads_m3 versus MA1572.1 (TGIF2LY); m=22/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.573539; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; dyads_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554866; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1100.2_shift2 (ASCL1)
; dyads_m3 versus MA1100.2 (ASCL1); m=24/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553419; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m3 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.516132; --wmCACCTGkw--- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; dyads_m3 versus MA0048.2_rc (NHLH1_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.502625; --mGCAGCTGCg--- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1570.1_shift2 (TFAP4(var.2))
; dyads_m3 versus MA1570.1 (TFAP4(var.2)); m=27/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.466888; --ahCAyrTGkt--- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; dyads_m3 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.444323; ------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

MA0775.1_rc_shift6 (MEIS3_rc)
; dyads_m3 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.429033; ------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift2 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2 (oligos_6nt_mkv2_m2oligos_6nt_mkv2_m2); m=0 (reference); ncol1=14; shift=2; ncol=18; --grgACAGCTGCtkm-- ; Alignment reference a 0 0 10 13 9 39 1 42 0 0 0 0 3 7 7 13 0 0 c 0 0 10 10 5 0 41 0 0 41 0 0 36 4 9 12 0 0 g 0 0 15 12 27 3 0 0 41 1 0 42 1 5 15 8 0 0 t 0 0 7 7 1 0 0 0 1 0 42 0 2 26 11 9 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; oligos_6nt_mkv2_m2 versus MA0499.2_rc (MYOD1_rc); m=1/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.813168; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0832.1_shift2 (Tcf21)
; oligos_6nt_mkv2_m2 versus MA0832.1 (Tcf21); m=2/29; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.812548; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; oligos_6nt_mkv2_m2 versus MA0500.2_rc (MYOG_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.772436; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1641.1_shift3 (MYF5)
; oligos_6nt_mkv2_m2 versus MA1641.1 (MYF5); m=4/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.753752; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; oligos_6nt_mkv2_m2 versus MA1485.1_rc (FERD3L_rc); m=5/29; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.751428; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; oligos_6nt_mkv2_m2 versus MA1619.1 (Ptf1a(var.2)); m=6/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.749862; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0521.1_shift4 (Tcf12)
; oligos_6nt_mkv2_m2 versus MA0521.1 (Tcf12); m=7/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.737082; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1621.1_rc_shift2 (Rbpjl_rc)
; oligos_6nt_mkv2_m2 versus MA1621.1_rc (Rbpjl_rc); m=8/29; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.729322; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0

MA0745.2_rc_shift2 (SNAI2_rc)
; oligos_6nt_mkv2_m2 versus MA0745.2_rc (SNAI2_rc); m=9/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.720034; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1618.1_shift3 (Ptf1a)
; oligos_6nt_mkv2_m2 versus MA1618.1 (Ptf1a); m=10/29; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.690908; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; oligos_6nt_mkv2_m2 versus MA1631.1 (ASCL1(var.2)); m=11/29; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.668454; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; oligos_6nt_mkv2_m2 versus MA0830.2_rc (TCF4_rc); m=12/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.661363; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0816.1_shift4 (Ascl2)
; oligos_6nt_mkv2_m2 versus MA0816.1 (Ascl2); m=13/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.643066; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; oligos_6nt_mkv2_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.636182; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; oligos_6nt_mkv2_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.633589; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1620.1_shift3 (Ptf1a(var.3))
; oligos_6nt_mkv2_m2 versus MA1620.1 (Ptf1a(var.3)); m=16/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.624666; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; oligos_6nt_mkv2_m2 versus MA1100.2_rc (ASCL1_rc); m=17/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.624243; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; oligos_6nt_mkv2_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.620118; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0665.1_shift4 (MSC)
; oligos_6nt_mkv2_m2 versus MA0665.1 (MSC); m=19/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.604208; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; oligos_6nt_mkv2_m2 versus MA0691.1 (TFAP4); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.593695; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; oligos_6nt_mkv2_m2 versus MA0048.2 (NHLH1); m=21/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.586998; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; oligos_6nt_mkv2_m2 versus MA1648.1 (TCF12(var.2)); m=22/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.57625; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0522.3_shift4 (TCF3)
; oligos_6nt_mkv2_m2 versus MA0522.3 (TCF3); m=23/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.573261; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; oligos_6nt_mkv2_m2 versus MA0667.1_rc (MYF6_rc); m=24/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.572289; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1529.1_shift0 (NHLH2)
; oligos_6nt_mkv2_m2 versus MA1529.1 (NHLH2); m=25/29; ncol2=18; w=14; offset=-2; strand=D; shift=0; score=0.554386; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0

MA0820.1_rc_shift4 (FIGLA_rc)
; oligos_6nt_mkv2_m2 versus MA0820.1_rc (FIGLA_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.528825; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift4 (SNAI3)
; oligos_6nt_mkv2_m2 versus MA1559.1 (SNAI3); m=27/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.518244; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

MA0774.1_shift2 (MEIS2)
; oligos_6nt_mkv2_m2 versus MA0774.1 (MEIS2); m=28/29; ncol2=8; w=8; offset=0; strand=D; shift=2; score=0.448954; --tTGACAGs-------- ; cor=; Ncor= a 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 0 c 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 0 g 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 0 t 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0 0

MA0775.1_shift2 (MEIS3)
; oligos_6nt_mkv2_m2 versus MA0775.1 (MEIS3); m=29/29; ncol2=8; w=8; offset=0; strand=D; shift=2; score=0.424596; --wTGACAgs-------- ; cor=; Ncor= a 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 0 c 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 0 g 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 0 t 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m12_shift4 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m12_shift4 (oligos_7nt_mkv2_m12oligos_7nt_mkv2_m12)
; oligos_7nt_mkv2_m12 (oligos_7nt_mkv2_m12oligos_7nt_mkv2_m12); m=0 (reference); ncol1=11; shift=4; ncol=16; ----smACAGTTGym- ; Alignment reference a 0 0 0 0 1 6 12 0 12 0 0 0 0 0 4 0 c 0 0 0 0 4 5 0 12 0 0 0 0 0 5 4 0 g 0 0 0 0 6 0 0 0 0 12 0 0 12 2 2 0 t 0 0 0 0 1 1 0 0 0 0 12 12 0 5 2 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_7nt_mkv2_m12 versus MA0100.3_rc (MYB_rc); m=1/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.80941; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_7nt_mkv2_m12 versus MA0667.1_rc (MYF6_rc); m=2/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.73539; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv2_m12 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=3/26; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.708606; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1641.1_shift4 (MYF5)
; oligos_7nt_mkv2_m12 versus MA1641.1 (MYF5); m=4/26; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.699779; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0

MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv2_m12 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/26; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.698824; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_7nt_mkv2_m12 versus MA1467.1 (ATOH1(var.2)); m=6/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.694825; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0

MA1559.1_shift5 (SNAI3)
; oligos_7nt_mkv2_m12 versus MA1559.1 (SNAI3); m=7/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.683886; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_7nt_mkv2_m12 versus MA1472.1 (BHLHA15(var.2)); m=8/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.681667; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_7nt_mkv2_m12 versus MA0665.1_rc (MSC_rc); m=9/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.679033; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_7nt_mkv2_m12 versus MA0820.1_rc (FIGLA_rc); m=10/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.671844; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_7nt_mkv2_m12 versus MA0499.2_rc (MYOD1_rc); m=11/26; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.658365; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA1542.1_rc_shift5 (OSR1_rc)
; oligos_7nt_mkv2_m12 versus MA1542.1_rc (OSR1_rc); m=12/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.65681; -----mACrGTAGCr- ; cor=; Ncor= a 0 0 0 0 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 c 0 0 0 0 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 g 0 0 0 0 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 t 0 0 0 0 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_7nt_mkv2_m12 versus MA0500.2_rc (MYOG_rc); m=13/26; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.650391; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0

MA0521.1_shift5 (Tcf12)
; oligos_7nt_mkv2_m12 versus MA0521.1 (Tcf12); m=14/26; ncol2=11; w=10; offset=1; strand=D; shift=5; score=0.647601; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0

MA0816.1_shift5 (Ascl2)
; oligos_7nt_mkv2_m12 versus MA0816.1 (Ascl2); m=15/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.640254; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_7nt_mkv2_m12 versus MA0745.2_rc (SNAI2_rc); m=16/26; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.639499; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0691.1_shift5 (TFAP4)
; oligos_7nt_mkv2_m12 versus MA0691.1 (TFAP4); m=17/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.639446; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0

MA1638.1_shift5 (HAND2)
; oligos_7nt_mkv2_m12 versus MA1638.1 (HAND2); m=18/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.639219; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0

MA1100.2_shift5 (ASCL1)
; oligos_7nt_mkv2_m12 versus MA1100.2 (ASCL1); m=19/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.638568; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_7nt_mkv2_m12 versus MA1635.1 (BHLHE22(var.2)); m=20/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.636961; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_7nt_mkv2_m12 versus MA1618.1 (Ptf1a); m=21/26; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.63301; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_7nt_mkv2_m12 versus MA1621.1_rc (Rbpjl_rc); m=22/26; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.590127; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA1485.1_rc_shift3 (FERD3L_rc)
; oligos_7nt_mkv2_m12 versus MA1485.1_rc (FERD3L_rc); m=23/26; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.565698; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0

MA0832.1_shift3 (Tcf21)
; oligos_7nt_mkv2_m12 versus MA0832.1 (Tcf21); m=24/26; ncol2=14; w=11; offset=-1; strand=D; shift=3; score=0.565364; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0

MA0743.2_shift0 (SCRT1)
; oligos_7nt_mkv2_m12 versus MA0743.2 (SCRT1); m=25/26; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.499295; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0744.2_shift0 (SCRT2)
; oligos_7nt_mkv2_m12 versus MA0744.2 (SCRT2); m=26/26; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.490485; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

One-to-n matrix alignment; reference matrix: dyads_m16_shift3 ; 78 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m16_shift3 (dyads_m16dyads_m16)
; dyads_m16 (dyads_m16dyads_m16); m=0 (reference); ncol1=12; shift=3; ncol=17; ---ttTTAATTAAaa-- ; Alignment reference a 0 0 0 6 6 0 1 24 23 3 1 27 26 14 12 0 0 c 0 0 0 4 4 0 0 3 1 1 0 0 2 4 6 0 0 g 0 0 0 6 4 2 0 0 1 1 3 0 0 4 4 0 0 t 0 0 0 12 14 26 27 1 3 23 24 1 0 6 6 0 0

MA0621.1_rc_shift4 (mix-a_rc)
; dyads_m16 versus MA0621.1_rc (mix-a_rc); m=1/77; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.790258; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0

MA0703.2_shift2 (LMX1B)
; dyads_m16 versus MA0703.2 (LMX1B); m=2/77; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.739137; --awtTTAATTAa---- ; cor=; Ncor= a 0 0 1894.0 2005.0 1109.0 0.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 2319.0 0 0 0 0 c 0 0 617.0 680.0 548.0 599.0 0.0 0.0 0.0 0.0 0.0 12.0 785.0 0 0 0 0 g 0 0 890.0 756.0 936.0 190.0 0.0 0.0 0.0 0.0 0.0 0.0 350.0 0 0 0 0 t 0 0 663.0 2058.0 2955.0 3465.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 609.0 0 0 0 0

MA0135.1_rc_shift3 (Lhx3_rc)
; dyads_m16 versus MA0135.1_rc (Lhx3_rc); m=3/77; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.717837; ---rrwTAATTAATTw- ; cor=; Ncor= a 0 0 0 6.0 10.0 8.0 3.0 19.0 16.0 0.0 1.0 20.0 20.0 1.0 0.0 8.0 0 c 0 0 0 3.0 0.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 3.0 0 g 0 0 0 9.0 8.0 0.0 1.0 1.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 0.0 0 t 0 0 0 2.0 2.0 9.0 16.0 0.0 2.0 20.0 19.0 0.0 0.0 19.0 16.0 9.0 0

MA1463.1_rc_shift4 (ARGFX_rc)
; dyads_m16 versus MA1463.1_rc (ARGFX_rc); m=4/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.698641; ----tyTAATTAgm--- ; cor=; Ncor= a 0 0 0 0 3158.0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 6479.0 0 0 0 c 0 0 0 0 2351.0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 4467.0 0 0 0 g 0 0 0 0 4098.0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 1750.0 0 0 0 t 0 0 0 0 6983.0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 3893.0 0 0 0

MA0707.1_shift4 (MNX1)
; dyads_m16 versus MA0707.1 (MNX1); m=5/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.69543; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0

MA0628.1_shift4 (POU6F1)
; dyads_m16 versus MA0628.1 (POU6F1); m=6/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.686368; ----ayTAATTArt--- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0

MA0662.1_shift4 (MIXL1)
; dyads_m16 versus MA0662.1 (MIXL1); m=7/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.674195; ----wyyAATTArm--- ; cor=; Ncor= a 0 0 0 0 6774.0 3981.0 2635.0 27042.0 27042.0 0.0 1385.0 27042.0 9688.0 8054.0 0 0 0 c 0 0 0 0 6037.0 9030.0 11639.0 1911.0 662.0 510.0 4270.0 1903.0 4894.0 8462.0 0 0 0 g 0 0 0 0 6646.0 5461.0 1245.0 3660.0 556.0 181.0 2031.0 115.0 8529.0 6129.0 0 0 0 t 0 0 0 0 7585.0 8570.0 15403.0 1038.0 736.0 27042.0 27042.0 2895.0 3931.0 4397.0 0 0 0

MA0634.1_shift4 (ALX3)
; dyads_m16 versus MA0634.1 (ALX3); m=8/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.669772; ----yyyAATTArm--- ; cor=; Ncor= a 0 0 0 0 1251.0 987.0 794.0 7877.0 7877.0 76.0 697.0 7877.0 2597.0 2759.0 0 0 0 c 0 0 0 0 2174.0 3402.0 3367.0 506.0 317.0 72.0 729.0 449.0 1671.0 2446.0 0 0 0 g 0 0 0 0 1062.0 1150.0 345.0 885.0 141.0 8.0 239.0 87.0 2205.0 1503.0 0 0 0 t 0 0 0 0 3390.0 2337.0 4510.0 629.0 231.0 7877.0 7877.0 977.0 1403.0 1168.0 0 0 0

MA0601.1_shift2 (Arid3b)
; dyads_m16 versus MA0601.1 (Arid3b); m=9/77; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.651783; --awaTTAATwaa---- ; cor=; Ncor= a 0 0 468.0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 262.0 490.0 351.0 0 0 0 0 c 0 0 177.0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 168.0 170.0 216.0 0 0 0 0 g 0 0 177.0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 73.0 170.0 216.0 0 0 0 0 t 0 0 177.0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0 498.0 170.0 216.0 0 0 0 0

MA0718.1_rc_shift4 (RAX_rc)
; dyads_m16 versus MA0718.1_rc (RAX_rc); m=10/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.647953; ----ryTAATTrry--- ; cor=; Ncor= a 0 0 0 0 652.0 375.0 126.0 2412.0 2412.0 24.0 40.0 1131.0 693.0 347.0 0 0 0 c 0 0 0 0 383.0 701.0 20.0 49.0 0.0 12.0 3.0 25.0 419.0 921.0 0 0 0 g 0 0 0 0 838.0 284.0 0.0 71.0 0.0 38.0 17.0 1281.0 961.0 370.0 0 0 0 t 0 0 0 0 539.0 1051.0 2412.0 71.0 123.0 2412.0 2412.0 214.0 339.0 775.0 0 0 0

MA0892.1_rc_shift4 (GSX1_rc)
; dyads_m16 versus MA0892.1_rc (GSX1_rc); m=11/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.647655; ----dyTAATkrgk--- ; cor=; Ncor= a 0 0 0 0 315.0 173.0 103.0 1183.0 1183.0 50.0 177.0 733.0 226.0 252.0 0 0 0 c 0 0 0 0 214.0 313.0 9.0 0.0 3.0 123.0 60.0 48.0 258.0 209.0 0 0 0 g 0 0 0 0 305.0 249.0 0.0 106.0 79.0 106.0 402.0 450.0 535.0 391.0 0 0 0 t 0 0 0 0 350.0 448.0 1183.0 106.0 90.0 1183.0 781.0 124.0 164.0 331.0 0 0 0

MA0710.1_shift4 (NOTO)
; dyads_m16 versus MA0710.1 (NOTO); m=12/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.643977; ----vytMATTArs--- ; cor=; Ncor= a 0 0 0 0 5631.0 774.0 7097.0 15096.0 21405.0 0.0 374.0 21405.0 7038.0 4078.0 0 0 0 c 0 0 0 0 5682.0 13986.0 4001.0 6310.0 0.0 0.0 62.0 0.0 3856.0 7711.0 0 0 0 g 0 0 0 0 6529.0 617.0 573.0 0.0 0.0 0.0 422.0 2057.0 7679.0 5493.0 0 0 0 t 0 0 0 0 3563.0 7419.0 21405.0 139.0 0.0 21405.0 21405.0 1904.0 2832.0 4124.0 0 0 0

MA0886.1_shift4 (EMX2)
; dyads_m16 versus MA0886.1 (EMX2); m=13/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.643573; ----rsTAATTAgs--- ; cor=; Ncor= a 0 0 0 0 10479.0 5704.0 834.0 37262.0 37262.0 0.0 0.0 37262.0 9139.0 5970.0 0 0 0 c 0 0 0 0 8412.0 13337.0 7761.0 4938.0 0.0 0.0 0.0 0.0 7124.0 13054.0 0 0 0 g 0 0 0 0 12802.0 10582.0 0.0 678.0 0.0 0.0 4025.0 0.0 17672.0 10195.0 0 0 0 t 0 0 0 0 5569.0 7639.0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 3328.0 8043.0 0 0 0

MA0658.1_rc_shift4 (LHX6_rc)
; dyads_m16 versus MA0658.1_rc (LHX6_rc); m=14/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.641036; ----ryTAATTAgy--- ; cor=; Ncor= a 0 0 0 0 1507.0 194.0 2.0 4438.0 4438.0 0.0 0.0 4438.0 1422.0 264.0 0 0 0 c 0 0 0 0 728.0 2769.0 243.0 108.0 15.0 0.0 487.0 28.0 791.0 1548.0 0 0 0 g 0 0 0 0 1654.0 637.0 0.0 766.0 98.0 14.0 90.0 253.0 3015.0 769.0 0 0 0 t 0 0 0 0 548.0 1668.0 4438.0 0.0 0.0 4438.0 4438.0 0.0 529.0 1857.0 0 0 0

MA0706.1_shift4 (MEOX2)
; dyads_m16 versus MA0706.1 (MEOX2); m=15/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.640913; ----rsTaATtAwc--- ; cor=; Ncor= a 0 0 0 0 8099.0 3262.0 1469.0 23930.0 23930.0 76.0 1152.0 23930.0 9634.0 5918.0 0 0 0 c 0 0 0 0 3821.0 8942.0 5055.0 8988.0 788.0 38.0 6039.0 359.0 3380.0 7195.0 0 0 0 g 0 0 0 0 6833.0 14987.0 642.0 3016.0 272.0 169.0 4974.0 4099.0 4086.0 5708.0 0 0 0 t 0 0 0 0 5176.0 2754.0 23930.0 900.0 492.0 23930.0 23930.0 1032.0 6830.0 5108.0 0 0 0

MA0644.1_shift4 (ESX1)
; dyads_m16 versus MA0644.1 (ESX1); m=16/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.629797; ----rcyAATTArc--- ; cor=; Ncor= a 0 0 0 0 10665.0 6473.0 2884.0 35623.0 35623.0 756.0 3721.0 35623.0 12065.0 7586.0 0 0 0 c 0 0 0 0 8153.0 15223.0 17981.0 3018.0 2440.0 995.0 4545.0 477.0 7659.0 14583.0 0 0 0 g 0 0 0 0 9485.0 5362.0 472.0 3416.0 867.0 4.0 1274.0 449.0 10210.0 6231.0 0 0 0 t 0 0 0 0 7321.0 8564.0 17642.0 2400.0 1089.0 35623.0 35623.0 2501.0 5689.0 7223.0 0 0 0

MA0894.1_shift4 (HESX1)
; dyads_m16 versus MA0894.1 (HESX1); m=17/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.627807; ----gyTAATTrry--- ; cor=; Ncor= a 0 0 0 0 831.0 879.0 187.0 4072.0 4072.0 0.0 0.0 1892.0 1245.0 801.0 0 0 0 c 0 0 0 0 753.0 1432.0 0.0 0.0 7.0 0.0 15.0 38.0 772.0 1601.0 0 0 0 g 0 0 0 0 1743.0 447.0 34.0 53.0 9.0 15.0 0.0 2180.0 1681.0 461.0 0 0 0 t 0 0 0 0 744.0 1313.0 4072.0 31.0 0.0 4072.0 4072.0 97.0 373.0 1209.0 0 0 0

MA0903.1_shift4 (HOXB3)
; dyads_m16 versus MA0903.1 (HOXB3); m=18/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.626266; ----asymATTArc--- ; cor=; Ncor= a 0 0 0 0 4500.0 2554.0 1744.0 7793.0 12899.0 0.0 441.0 12899.0 4542.0 3199.0 0 0 0 c 0 0 0 0 2526.0 4145.0 4979.0 5106.0 545.0 150.0 839.0 119.0 2119.0 3995.0 0 0 0 g 0 0 0 0 3151.0 4005.0 604.0 838.0 640.0 0.0 0.0 0.0 4732.0 2981.0 0 0 0 t 0 0 0 0 2722.0 2194.0 7920.0 697.0 242.0 12899.0 12899.0 574.0 1506.0 2724.0 0 0 0

MA0853.1_rc_shift0 (Alx4_rc)
; dyads_m16 versus MA0853.1_rc (Alx4_rc); m=19/77; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.625421; gstdayTAATTArygcg ; cor=; Ncor= a 24.0 23.0 22.0 30.0 42.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 16.0 21.0 10.0 11.0 c 21.0 25.0 19.0 13.0 18.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 29.0 16.0 56.0 15.0 g 43.0 29.0 23.0 28.0 23.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 15.0 44.0 24.0 59.0 t 12.0 23.0 36.0 29.0 17.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 40.0 19.0 10.0 16.0

MA0699.1_shift4 (LBX2)
; dyads_m16 versus MA0699.1 (LBX2); m=20/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.617835; ----rcyAATTArc--- ; cor=; Ncor= a 0 0 0 0 809.0 366.0 157.0 2996.0 2996.0 0.0 150.0 2996.0 990.0 722.0 0 0 0 c 0 0 0 0 739.0 1437.0 1634.0 338.0 290.0 29.0 258.0 34.0 434.0 977.0 0 0 0 g 0 0 0 0 832.0 477.0 109.0 325.0 130.0 118.0 293.0 106.0 1135.0 737.0 0 0 0 t 0 0 0 0 616.0 715.0 1362.0 57.0 89.0 2996.0 2996.0 148.0 438.0 560.0 0 0 0

MA0661.1_rc_shift4 (MEOX1_rc)
; dyads_m16 versus MA0661.1_rc (MEOX1_rc); m=21/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.615643; ----gkTAATTAsy--- ; cor=; Ncor= a 0 0 0 0 506.0 683.0 6.0 3000.0 3000.0 3.0 39.0 3000.0 115.0 405.0 0 0 0 c 0 0 0 0 614.0 449.0 338.0 328.0 0.0 2.0 151.0 53.0 1363.0 986.0 0 0 0 g 0 0 0 0 1309.0 911.0 0.0 242.0 29.0 0.0 848.0 406.0 1637.0 704.0 0 0 0 t 0 0 0 0 572.0 956.0 3000.0 14.0 8.0 3000.0 3000.0 64.0 150.0 906.0 0 0 0

MA0702.2_rc_shift5 (LMX1A_rc)
; dyads_m16 versus MA0702.2_rc (LMX1A_rc); m=22/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.613433; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0

MA0879.1_rc_shift4 (Dlx1_rc)
; dyads_m16 versus MA0879.1_rc (Dlx1_rc); m=23/77; ncol2=10; w=10; offset=1; strand=R; shift=4; score=0.606823; ----gmTAATTrkk--- ; cor=; Ncor= a 0 0 0 0 1648.0 2536.0 1910.0 8281.0 8281.0 535.0 347.0 5528.0 1311.0 1519.0 0 0 0 c 0 0 0 0 1893.0 2077.0 36.0 511.0 49.0 42.0 416.0 149.0 1592.0 1814.0 0 0 0 g 0 0 0 0 3126.0 1894.0 103.0 359.0 41.0 105.0 861.0 2753.0 2795.0 2825.0 0 0 0 t 0 0 0 0 1613.0 1774.0 8281.0 157.0 1002.0 8281.0 8281.0 2295.0 2584.0 2123.0 0 0 0

MA0854.1_rc_shift0 (Alx1_rc)
; dyads_m16 versus MA0854.1_rc (Alx1_rc); m=24/77; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.600258; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0

MA1497.1_shift4 (HOXA6)
; dyads_m16 versus MA1497.1 (HOXA6); m=25/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.598306; ----ggymATTAas--- ; cor=; Ncor= a 0 0 0 0 1275.0 1337.0 87.0 7201.0 7201.0 0.0 1911.0 7201.0 2700.0 1234.0 0 0 0 c 0 0 0 0 1595.0 1725.0 2967.0 3768.0 745.0 0.0 233.0 94.0 1377.0 2457.0 0 0 0 g 0 0 0 0 2728.0 7201.0 100.0 833.0 908.0 0.0 553.0 502.0 1632.0 2020.0 0 0 0 t 0 0 0 0 1603.0 1605.0 4234.0 1482.0 11.0 7201.0 7201.0 663.0 1492.0 1489.0 0 0 0

MA0890.1_shift4 (GBX2)
; dyads_m16 versus MA0890.1 (GBX2); m=26/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.597844; ----rsyAATTArs--- ; cor=; Ncor= a 0 0 0 0 10334.0 3761.0 699.0 27366.0 27366.0 0.0 318.0 27366.0 8236.0 5389.0 0 0 0 c 0 0 0 0 5147.0 10517.0 15511.0 570.0 250.0 61.0 570.0 73.0 4502.0 9159.0 0 0 0 g 0 0 0 0 8145.0 8429.0 106.0 1113.0 114.0 65.0 673.0 30.0 10638.0 7075.0 0 0 0 t 0 0 0 0 3740.0 4658.0 11855.0 227.0 25.0 27366.0 27366.0 650.0 3991.0 5743.0 0 0 0

MA0704.1_shift5 (Lhx4)
; dyads_m16 versus MA0704.1 (Lhx4); m=27/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.591143; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 422.0 217.0 2896.0 2896.0 0.0 0.0 2896.0 1314.0 0 0 0 0 c 0 0 0 0 0 817.0 912.0 428.0 0.0 0.0 446.0 39.0 449.0 0 0 0 0 g 0 0 0 0 0 495.0 0.0 309.0 0.0 0.0 57.0 316.0 857.0 0 0 0 0 t 0 0 0 0 0 1161.0 2896.0 255.0 155.0 2896.0 2896.0 135.0 275.0 0 0 0 0

MA1501.1_shift4 (HOXB7)
; dyads_m16 versus MA1501.1 (HOXB7); m=28/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.58338; ----gGyAATTArs--- ; cor=; Ncor= a 0 0 0 0 188.0 0.0 0.0 828.0 828.0 0.0 79.0 828.0 324.0 132.0 0 0 0 c 0 0 0 0 144.0 0.0 359.0 222.0 29.0 0.0 3.0 0.0 165.0 354.0 0 0 0 g 0 0 0 0 380.0 828.0 51.0 0.0 0.0 31.0 0.0 151.0 268.0 250.0 0 0 0 t 0 0 0 0 116.0 87.0 828.0 0.0 0.0 828.0 828.0 0.0 71.0 92.0 0 0 0

MA0888.1_shift4 (EVX2)
; dyads_m16 versus MA0888.1 (EVX2); m=29/77; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.583342; ----svTaATTAgc--- ; cor=; Ncor= a 0 0 0 0 4411.0 5143.0 2541.0 10108.0 20419.0 5.0 303.0 20419.0 4090.0 3778.0 0 0 0 c 0 0 0 0 5113.0 6306.0 5669.0 5018.0 156.0 166.0 863.0 0.0 4858.0 7715.0 0 0 0 g 0 0 0 0 7814.0 7041.0 969.0 4541.0 881.0 702.0 445.0 1559.0 7789.0 4997.0 0 0 0 t 0 0 0 0 3082.0 1929.0 20419.0 752.0 0.0 20419.0 20419.0 446.0 3682.0 3930.0 0 0 0

MA0874.1_shift0 (Arx)
; dyads_m16 versus MA0874.1 (Arx); m=30/77; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.580836; gtscryTAATTArtksw ; cor=; Ncor= a 24.0 13.0 16.0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 16.0 18.0 9.0 53.0 c 22.0 16.0 37.0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 16.0 11.0 36.0 10.0 g 40.0 19.0 29.0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 14.0 44.0 37.0 7.0 t 14.0 52.0 19.0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 54.0 27.0 18.0 30.0

MA0674.1_rc_shift5 (NKX6-1_rc)
; dyads_m16 versus MA0674.1_rc (NKX6-1_rc); m=31/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.569253; -----tTAATkRs---- ; cor=; Ncor= a 0 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 381.0 0 0 0 0 c 0 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 734.0 0 0 0 0 g 0 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 695.0 0 0 0 0 t 0 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 403.0 0 0 0 0

MA0721.1_shift5 (UNCX)
; dyads_m16 versus MA0721.1 (UNCX); m=32/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.550682; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4980.0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 13811.0 0 0 0 0 c 0 0 0 0 0 13363.0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 7825.0 0 0 0 0 g 0 0 0 0 0 5711.0 2086.0 4582.0 420.0 117.0 1782.0 731.0 10480.0 0 0 0 0 t 0 0 0 0 0 12871.0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 4810.0 0 0 0 0

MA0722.1_shift5 (VAX1)
; dyads_m16 versus MA0722.1 (VAX1); m=33/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.545836; -----yTAATtAy---- ; cor=; Ncor= a 0 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 977.0 0 0 0 0 c 0 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 1911.0 0 0 0 0 g 0 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 933.0 0 0 0 0 t 0 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0 1433.0 0 0 0 0

MA1519.1_shift5 (LHX5)
; dyads_m16 versus MA1519.1 (LHX5); m=34/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.542829; -----sYAATTAa---- ; cor=; Ncor= a 0 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 2749.0 0 0 0 0 c 0 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 1576.0 0 0 0 0 g 0 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 1483.0 0 0 0 0 t 0 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0 1333.0 0 0 0 0

MA0723.1_shift5 (VAX2)
; dyads_m16 versus MA0723.1 (VAX2); m=35/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.54146; -----yTAATkAc---- ; cor=; Ncor= a 0 0 0 0 0 921.0 1410.0 14297.0 14297.0 576.0 1341.0 14297.0 2711.0 0 0 0 0 c 0 0 0 0 0 7816.0 2823.0 2781.0 213.0 161.0 987.0 179.0 5648.0 0 0 0 0 g 0 0 0 0 0 1384.0 221.0 414.0 94.0 564.0 5673.0 3818.0 2869.0 0 0 0 0 t 0 0 0 0 0 6482.0 14297.0 565.0 218.0 14297.0 14297.0 562.0 3069.0 0 0 0 0

MA0716.1_shift5 (PRRX1)
; dyads_m16 versus MA0716.1 (PRRX1); m=36/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.541074; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4132.0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 9498.0 0 0 0 0 c 0 0 0 0 0 9063.0 11122.0 1088.0 503.0 3.0 2302.0 644.0 4269.0 0 0 0 0 g 0 0 0 0 0 4339.0 1121.0 1776.0 202.0 0.0 1004.0 136.0 6366.0 0 0 0 0 t 0 0 0 0 0 6364.0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 3765.0 0 0 0 0

MA0675.1_rc_shift5 (NKX6-2_rc)
; dyads_m16 versus MA0675.1_rc (NKX6-2_rc); m=37/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.540878; -----tTAATkrs---- ; cor=; Ncor= a 0 0 0 0 0 3846.0 678.0 18935.0 18935.0 546.0 2582.0 11104.0 3874.0 0 0 0 0 c 0 0 0 0 0 1660.0 775.0 551.0 0.0 191.0 1053.0 814.0 5228.0 0 0 0 0 g 0 0 0 0 0 3457.0 370.0 2233.0 0.0 310.0 7581.0 7831.0 6072.0 0 0 0 0 t 0 0 0 0 0 9971.0 18935.0 2468.0 584.0 18935.0 11354.0 1172.0 3761.0 0 0 0 0

MA0654.1_shift5 (ISX)
; dyads_m16 versus MA0654.1 (ISX); m=38/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.533532; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 318.0 10.0 2065.0 2065.0 0.0 0.0 2065.0 770.0 0 0 0 0 c 0 0 0 0 0 863.0 1003.0 48.0 16.0 0.0 0.0 0.0 307.0 0 0 0 0 g 0 0 0 0 0 364.0 0.0 5.0 0.0 0.0 24.0 0.0 704.0 0 0 0 0 t 0 0 0 0 0 520.0 1061.0 24.0 10.0 2065.0 2065.0 49.0 283.0 0 0 0 0

MA0630.1_rc_shift5 (SHOX_rc)
; dyads_m16 versus MA0630.1_rc (SHOX_rc); m=39/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.533305; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 133.0 111.0 768.0 943.0 2.0 45.0 886.0 357.0 0 0 0 0 c 0 0 0 0 0 379.0 424.0 84.0 27.0 5.0 55.0 9.0 162.0 0 0 0 0 g 0 0 0 0 0 187.0 48.0 50.0 15.0 2.0 48.0 30.0 301.0 0 0 0 0 t 0 0 0 0 0 301.0 416.0 98.0 15.0 991.0 852.0 74.0 179.0 0 0 0 0

MA0075.3_rc_shift5 (PRRX2_rc)
; dyads_m16 versus MA0075.3_rc (PRRX2_rc); m=40/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.531301; -----yTAATTrg---- ; cor=; Ncor= a 0 0 0 0 0 1295.0 0.0 6720.0 6720.0 0.0 0.0 4711.0 1933.0 0 0 0 0 c 0 0 0 0 0 1862.0 399.0 0.0 0.0 0.0 3.0 131.0 1613.0 0 0 0 0 g 0 0 0 0 0 1271.0 1.0 0.0 0.0 0.0 29.0 2008.0 6720.0 0 0 0 0 t 0 0 0 0 0 2291.0 6720.0 0.0 0.0 6720.0 6720.0 122.0 778.0 0 0 0 0

MA0720.1_shift5 (Shox2)
; dyads_m16 versus MA0720.1 (Shox2); m=41/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.530374; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 2390.0 979.0 18179.0 18179.0 29.0 597.0 18179.0 6542.0 0 0 0 0 c 0 0 0 0 0 7695.0 9027.0 626.0 138.0 12.0 545.0 193.0 3021.0 0 0 0 0 g 0 0 0 0 0 3292.0 228.0 426.0 3.0 0.0 870.0 36.0 6337.0 0 0 0 0 t 0 0 0 0 0 4802.0 9152.0 766.0 79.0 18179.0 18179.0 895.0 2278.0 0 0 0 0

MA1481.1_shift5 (DRGX)
; dyads_m16 versus MA1481.1 (DRGX); m=42/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.529936; -----yyAATTAs---- ; cor=; Ncor= a 0 0 0 0 0 1172.0 1079.0 14867.0 14867.0 0.0 0.0 14867.0 3117.0 0 0 0 0 c 0 0 0 0 0 8180.0 5997.0 501.0 0.0 0.0 813.0 17.0 4651.0 0 0 0 0 g 0 0 0 0 0 2692.0 1111.0 2037.0 0.0 0.0 209.0 962.0 3995.0 0 0 0 0 t 0 0 0 0 0 6687.0 8870.0 0.0 0.0 14867.0 14867.0 144.0 3105.0 0 0 0 0

MA0725.1_rc_shift5 (VSX1_rc)
; dyads_m16 versus MA0725.1_rc (VSX1_rc); m=43/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.529755; -----vTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 0 0 c 0 0 0 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 0 0 g 0 0 0 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 0 0 t 0 0 0 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0 0 0

MA0726.1_rc_shift5 (VSX2_rc)
; dyads_m16 versus MA0726.1_rc (VSX2_rc); m=44/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.52678; -----cTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 0 0 c 0 0 0 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 0 0 g 0 0 0 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 0 0 t 0 0 0 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0 0 0

MA0717.1_rc_shift5 (RAX2_rc)
; dyads_m16 versus MA0717.1_rc (RAX2_rc); m=45/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.526439; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 5601.0 4258.0 38860.0 38860.0 1030.0 2421.0 19215.0 10666.0 0 0 0 0 c 0 0 0 0 0 12362.0 360.0 2513.0 125.0 757.0 4490.0 1688.0 7049.0 0 0 0 0 g 0 0 0 0 0 7487.0 2644.0 4232.0 738.0 1523.0 3060.0 19645.0 15810.0 0 0 0 0 t 0 0 0 0 0 13411.0 38860.0 2167.0 270.0 38860.0 38860.0 3558.0 5334.0 0 0 0 0

MA1577.1_rc_shift5 (TLX2_rc)
; dyads_m16 versus MA1577.1_rc (TLX2_rc); m=46/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.525679; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 852.0 0.0 7799.0 7799.0 0.0 0.0 8156.0 2379.0 0 0 0 0 c 0 0 0 0 0 3439.0 0.0 0.0 0.0 0.0 80.0 1112.0 1851.0 0 0 0 0 g 0 0 0 0 0 1323.0 0.0 0.0 0.0 0.0 0.0 7799.0 2572.0 0 0 0 0 t 0 0 0 0 0 2184.0 7799.0 0.0 0.0 7799.0 7799.0 1435.0 997.0 0 0 0 0

MA0701.2_shift5 (LHX9)
; dyads_m16 versus MA0701.2 (LHX9); m=47/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.519676; -----CyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 2261.0 0 0 0 0 c 0 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 1013.0 0 0 0 0 g 0 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 1946.0 0 0 0 0 t 0 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0 856.0 0 0 0 0

MA0612.2_rc_shift5 (EMX1_rc)
; dyads_m16 versus MA0612.2_rc (EMX1_rc); m=48/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.519542; -----sTAATTAs---- ; cor=; Ncor= a 0 0 0 0 0 1062.0 0.0 9544.0 9544.0 0.0 0.0 7281.0 1777.0 0 0 0 0 c 0 0 0 0 0 4516.0 0.0 933.0 0.0 0.0 0.0 0.0 3066.0 0 0 0 0 g 0 0 0 0 0 2633.0 0.0 0.0 0.0 0.0 1235.0 2263.0 3425.0 0 0 0 0 t 0 0 0 0 0 1333.0 9544.0 0.0 0.0 9544.0 9544.0 19.0 1276.0 0 0 0 0

MA0900.2_rc_shift5 (HOXA2_rc)
; dyads_m16 versus MA0900.2_rc (HOXA2_rc); m=49/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.518231; -----sTAATKAs---- ; cor=; Ncor= a 0 0 0 0 0 7731.0 0.0 56949.0 56949.0 0.0 0.0 56949.0 5931.0 0 0 0 0 c 0 0 0 0 0 22246.0 2052.0 0.0 0.0 0.0 290.0 0.0 22686.0 0 0 0 0 g 0 0 0 0 0 16330.0 0.0 0.0 0.0 0.0 17275.0 3636.0 19452.0 0 0 0 0 t 0 0 0 0 0 10641.0 56949.0 0.0 0.0 56949.0 39674.0 0.0 8880.0 0 0 0 0

MA0132.2_rc_shift5 (PDX1_rc)
; dyads_m16 versus MA0132.2_rc (PDX1_rc); m=50/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.517504; -----yTAATkrs---- ; cor=; Ncor= a 0 0 0 0 0 852.0 0.0 7130.0 7130.0 0.0 78.0 4661.0 999.0 0 0 0 0 c 0 0 0 0 0 2881.0 0.0 0.0 0.0 0.0 185.0 0.0 2441.0 0 0 0 0 g 0 0 0 0 0 1216.0 0.0 0.0 0.0 45.0 2291.0 2469.0 2206.0 0 0 0 0 t 0 0 0 0 0 2181.0 7130.0 0.0 0.0 7130.0 4839.0 292.0 1483.0 0 0 0 0

MA0715.1_rc_shift6 (PROP1_rc)
; dyads_m16 versus MA0715.1_rc (PROP1_rc); m=51/77; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.514971; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0

MA1505.1_shift5 (HOXC8)
; dyads_m16 versus MA1505.1 (HOXC8); m=52/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.513742; -----gyAATTRc---- ; cor=; Ncor= a 0 0 0 0 0 1766.0 0.0 9273.0 9273.0 0.0 961.0 9273.0 2265.0 0 0 0 0 c 0 0 0 0 0 1552.0 4555.0 2727.0 20.0 0.0 99.0 0.0 3851.0 0 0 0 0 g 0 0 0 0 0 3724.0 0.0 19.0 0.0 211.0 2656.0 4325.0 1469.0 0 0 0 0 t 0 0 0 0 0 2230.0 9273.0 983.0 0.0 9273.0 9273.0 0.0 1687.0 0 0 0 0

MA1495.1_shift5 (HOXA1)
; dyads_m16 versus MA1495.1 (HOXA1); m=53/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.51008; -----sTAATtAs---- ; cor=; Ncor= a 0 0 0 0 0 1167.0 0.0 7406.0 7406.0 0.0 0.0 7406.0 1175.0 0 0 0 0 c 0 0 0 0 0 2244.0 1546.0 2083.0 0.0 0.0 1310.0 0.0 2811.0 0 0 0 0 g 0 0 0 0 0 2667.0 0.0 1244.0 0.0 0.0 2265.0 1576.0 2237.0 0 0 0 0 t 0 0 0 0 0 1328.0 7406.0 0.0 0.0 7406.0 7406.0 0.0 1182.0 0 0 0 0

MA0027.2_rc_shift5 (EN1_rc)
; dyads_m16 versus MA0027.2_rc (EN1_rc); m=54/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.503542; -----cTAATTrs---- ; cor=; Ncor= a 0 0 0 0 0 302.0 132.0 2891.0 2891.0 0.0 0.0 1562.0 525.0 0 0 0 0 c 0 0 0 0 0 1216.0 30.0 162.0 0.0 0.0 71.0 5.0 765.0 0 0 0 0 g 0 0 0 0 0 683.0 0.0 483.0 0.0 28.0 99.0 1328.0 1174.0 0 0 0 0 t 0 0 0 0 0 689.0 2891.0 57.0 0.0 2891.0 2891.0 104.0 427.0 0 0 0 0

MA0885.1_shift5 (Dlx2)
; dyads_m16 versus MA0885.1 (Dlx2); m=55/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.503189; -----syAATTAw---- ; cor=; Ncor= a 0 0 0 0 0 3170.0 543.0 13749.0 13749.0 0.0 260.0 13749.0 3710.0 0 0 0 0 c 0 0 0 0 0 3565.0 7409.0 684.0 289.0 0.0 393.0 46.0 3277.0 0 0 0 0 g 0 0 0 0 0 4739.0 135.0 488.0 15.0 0.0 565.0 55.0 3065.0 0 0 0 0 t 0 0 0 0 0 2275.0 6340.0 524.0 179.0 13749.0 13749.0 579.0 3697.0 0 0 0 0

MA0618.1_shift5 (LBX1)
; dyads_m16 versus MA0618.1 (LBX1); m=56/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.502339; -----tTAAYTRG---- ; cor=; Ncor= a 0 0 0 0 0 217.0 0.0 999.0 999.0 0.0 143.0 731.0 29.0 0 0 0 0 c 0 0 0 0 0 131.0 49.0 0.0 0.0 262.0 0.0 0.0 114.0 0 0 0 0 g 0 0 0 0 0 174.0 0.0 0.0 0.0 0.0 119.0 268.0 799.0 0 0 0 0 t 0 0 0 0 0 478.0 951.0 0.0 0.0 738.0 738.0 0.0 57.0 0 0 0 0

MA1504.1_rc_shift5 (HOXC4_rc)
; dyads_m16 versus MA1504.1_rc (HOXC4_rc); m=57/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.502123; -----yTAATkRy---- ; cor=; Ncor= a 0 0 0 0 0 1592.0 0.0 8759.0 8759.0 0.0 0.0 8759.0 1353.0 0 0 0 0 c 0 0 0 0 0 2713.0 825.0 0.0 0.0 583.0 0.0 0.0 2809.0 0 0 0 0 g 0 0 0 0 0 1679.0 0.0 0.0 0.0 0.0 5152.0 3111.0 1867.0 0 0 0 0 t 0 0 0 0 0 2776.0 8759.0 0.0 0.0 8759.0 3607.0 188.0 2731.0 0 0 0 0

MA1507.1_shift5 (HOXD4)
; dyads_m16 versus MA1507.1 (HOXD4); m=58/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.501093; -----rYmATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1186.0 0.0 1542.0 3405.0 0.0 0.0 3405.0 1102.0 0 0 0 0 c 0 0 0 0 0 705.0 1184.0 1862.0 0.0 0.0 0.0 0.0 525.0 0 0 0 0 g 0 0 0 0 0 1155.0 0.0 0.0 176.0 0.0 0.0 194.0 1147.0 0 0 0 0 t 0 0 0 0 0 359.0 3405.0 0.0 0.0 3405.0 3405.0 0.0 631.0 0 0 0 0

MA1499.1_rc_shift5 (HOXB4_rc)
; dyads_m16 versus MA1499.1_rc (HOXB4_rc); m=59/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.499417; -----yTAATkAy---- ; cor=; Ncor= a 0 0 0 0 0 1388.0 0.0 9080.0 9080.0 0.0 0.0 9080.0 1021.0 0 0 0 0 c 0 0 0 0 0 4683.0 55.0 271.0 0.0 265.0 0.0 0.0 4397.0 0 0 0 0 g 0 0 0 0 0 1409.0 0.0 0.0 0.0 0.0 5459.0 2103.0 1377.0 0 0 0 0 t 0 0 0 0 0 4397.0 9080.0 0.0 0.0 9080.0 3621.0 0.0 4683.0 0 0 0 0

MA0882.1_shift5 (DLX6)
; dyads_m16 versus MA0882.1 (DLX6); m=60/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.498578; -----syAATTAm---- ; cor=; Ncor= a 0 0 0 0 0 602.0 137.0 2623.0 2623.0 12.0 48.0 2623.0 703.0 0 0 0 0 c 0 0 0 0 0 925.0 1410.0 273.0 124.0 0.0 140.0 30.0 823.0 0 0 0 0 g 0 0 0 0 0 680.0 21.0 143.0 0.0 0.0 68.0 16.0 473.0 0 0 0 0 t 0 0 0 0 0 415.0 1212.0 184.0 56.0 2623.0 2623.0 193.0 624.0 0 0 0 0

MA0705.1_shift5 (Lhx8)
; dyads_m16 versus MA0705.1 (Lhx8); m=61/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.498512; -----cYAATYRr---- ; cor=; Ncor= a 0 0 0 0 0 472.0 0.0 5092.0 5092.0 0.0 0.0 5092.0 1366.0 0 0 0 0 c 0 0 0 0 0 2588.0 1996.0 160.0 0.0 0.0 2083.0 0.0 1156.0 0 0 0 0 g 0 0 0 0 0 925.0 0.0 1670.0 0.0 0.0 88.0 1929.0 2156.0 0 0 0 0 t 0 0 0 0 0 1108.0 5092.0 0.0 0.0 5092.0 5092.0 0.0 414.0 0 0 0 0

MA0713.1_shift1 (PHOX2A)
; dyads_m16 versus MA0713.1 (PHOX2A); m=62/77; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=0.496382; -TAAtyyAATTA----- ; cor=; Ncor= a 0 2164.0 11434.0 11434.0 1362.0 639.0 1262.0 11434.0 11434.0 0.0 1135.0 11434.0 0 0 0 0 0 c 0 1240.0 225.0 0.0 4424.0 5304.0 4580.0 717.0 199.0 10.0 778.0 229.0 0 0 0 0 0 g 0 497.0 1539.0 34.0 629.0 2300.0 806.0 1896.0 309.0 2.0 81.0 816.0 0 0 0 0 0 t 0 11434.0 1001.0 5.0 11434.0 6130.0 6855.0 437.0 132.0 11434.0 11434.0 1657.0 0 0 0 0 0

MA0068.2_rc_shift5 (PAX4_rc)
; dyads_m16 versus MA0068.2_rc (PAX4_rc); m=63/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.496315; -----cTAATTag---- ; cor=; Ncor= a 0 0 0 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 0 0 0 c 0 0 0 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 0 0 0 g 0 0 0 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 0 0 0 t 0 0 0 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0 0 0 0

MA0880.1_shift5 (Dlx3)
; dyads_m16 versus MA0880.1 (Dlx3); m=64/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.495461; -----syAATTAm---- ; cor=; Ncor= a 0 0 0 0 0 1697.0 572.0 7323.0 7323.0 173.0 399.0 7323.0 2027.0 0 0 0 0 c 0 0 0 0 0 2338.0 4133.0 995.0 536.0 66.0 535.0 202.0 2131.0 0 0 0 0 g 0 0 0 0 0 2079.0 164.0 587.0 62.0 60.0 452.0 101.0 1356.0 0 0 0 0 t 0 0 0 0 0 1208.0 3190.0 643.0 299.0 7323.0 7323.0 691.0 1809.0 0 0 0 0

MA0902.2_shift5 (HOXB2)
; dyads_m16 versus MA0902.2 (HOXB2); m=65/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.48925; -----symATTAs---- ; cor=; Ncor= a 0 0 0 0 0 807.0 51.0 6827.0 6827.0 0.0 0.0 6827.0 1273.0 0 0 0 0 c 0 0 0 0 0 2038.0 2834.0 3276.0 0.0 0.0 0.0 0.0 2031.0 0 0 0 0 g 0 0 0 0 0 2925.0 0.0 199.0 0.0 0.0 1876.0 0.0 2933.0 0 0 0 0 t 0 0 0 0 0 1056.0 3993.0 0.0 0.0 6827.0 6827.0 0.0 589.0 0 0 0 0

MA0881.1_rc_shift5 (Dlx4_rc)
; dyads_m16 versus MA0881.1_rc (Dlx4_rc); m=66/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.48893; -----kTAATTrs---- ; cor=; Ncor= a 0 0 0 0 0 2999.0 1127.0 12054.0 12054.0 499.0 883.0 5213.0 1811.0 0 0 0 0 c 0 0 0 0 0 2286.0 134.0 542.0 38.0 55.0 739.0 145.0 3679.0 0 0 0 0 g 0 0 0 0 0 3703.0 316.0 868.0 85.0 744.0 1500.0 6841.0 3928.0 0 0 0 0 t 0 0 0 0 0 3065.0 12054.0 440.0 88.0 12054.0 12054.0 724.0 2637.0 0 0 0 0

MA0125.1_rc_shift4 (Nobox_rc)
; dyads_m16 versus MA0125.1_rc (Nobox_rc); m=67/77; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.488788; ----rsyAATTA----- ; cor=; Ncor= a 0 0 0 0 17.0 4.0 1.0 32.0 34.0 0.0 2.0 37.0 0 0 0 0 0 c 0 0 0 0 6.0 18.0 22.0 4.0 2.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 13.0 12.0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 2.0 4.0 15.0 2.0 1.0 38.0 36.0 0.0 0 0 0 0 0

MA0904.2_shift5 (HOXB5)
; dyads_m16 versus MA0904.2 (HOXB5); m=68/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.485886; -----sTMATKAs---- ; cor=; Ncor= a 0 0 0 0 0 381.0 0.0 3067.0 3067.0 0.0 6.0 3067.0 253.0 0 0 0 0 c 0 0 0 0 0 1120.0 537.0 1031.0 0.0 0.0 26.0 0.0 1219.0 0 0 0 0 g 0 0 0 0 0 1273.0 0.0 0.0 0.0 0.0 1061.0 564.0 1146.0 0 0 0 0 t 0 0 0 0 0 294.0 3067.0 0.0 0.0 3067.0 3067.0 0.0 450.0 0 0 0 0

MA0912.2_rc_shift5 (HOXD3_rc)
; dyads_m16 versus MA0912.2_rc (HOXD3_rc); m=69/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.485708; -----gTAATTAG---- ; cor=; Ncor= a 0 0 0 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 0 0 c 0 0 0 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 0 0 g 0 0 0 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 0 0 t 0 0 0 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0 0 0

MA0158.2_shift5 (HOXA5)
; dyads_m16 versus MA0158.2 (HOXA5); m=70/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.481231; -----symATTAs---- ; cor=; Ncor= a 0 0 0 0 0 142.0 0.0 3130.0 3130.0 0.0 0.0 3130.0 480.0 0 0 0 0 c 0 0 0 0 0 832.0 1052.0 1632.0 0.0 0.0 0.0 0.0 1463.0 0 0 0 0 g 0 0 0 0 0 1759.0 0.0 81.0 0.0 0.0 885.0 0.0 1133.0 0 0 0 0 t 0 0 0 0 0 397.0 2078.0 0.0 0.0 3130.0 3130.0 0.0 54.0 0 0 0 0

MA1500.1_shift5 (HOXB6)
; dyads_m16 versus MA1500.1 (HOXB6); m=71/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.480457; -----tTAATkrc---- ; cor=; Ncor= a 0 0 0 0 0 1357.0 0.0 6192.0 6192.0 0.0 403.0 3128.0 691.0 0 0 0 0 c 0 0 0 0 0 2468.0 710.0 647.0 0.0 436.0 926.0 0.0 4868.0 0 0 0 0 g 0 0 0 0 0 2395.0 0.0 0.0 0.0 727.0 4139.0 3064.0 996.0 0 0 0 0 t 0 0 0 0 0 3724.0 6192.0 564.0 0.0 6192.0 6192.0 0.0 1324.0 0 0 0 0

MA1476.1_shift5 (DLX5)
; dyads_m16 versus MA1476.1 (DLX5); m=72/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.478878; -----syAATTAy---- ; cor=; Ncor= a 0 0 0 0 0 2115.0 125.0 12919.0 12919.0 0.0 0.0 12919.0 2285.0 0 0 0 0 c 0 0 0 0 0 3457.0 7614.0 68.0 0.0 0.0 0.0 0.0 3811.0 0 0 0 0 g 0 0 0 0 0 5502.0 0.0 47.0 0.0 0.0 0.0 0.0 3096.0 0 0 0 0 t 0 0 0 0 0 1845.0 5305.0 0.0 0.0 12919.0 12919.0 0.0 3727.0 0 0 0 0

MA0709.1_shift5 (Msx3)
; dyads_m16 versus MA0709.1 (Msx3); m=73/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.477918; -----syAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1381.0 312.0 8380.0 8380.0 0.0 121.0 8380.0 2689.0 0 0 0 0 c 0 0 0 0 0 3247.0 5798.0 160.0 89.0 0.0 215.0 59.0 1737.0 0 0 0 0 g 0 0 0 0 0 2496.0 29.0 237.0 38.0 0.0 105.0 88.0 2595.0 0 0 0 0 t 0 0 0 0 0 1256.0 2582.0 94.0 5.0 8380.0 8380.0 213.0 1360.0 0 0 0 0

MA0151.1_shift8 (Arid3a)
; dyads_m16 versus MA0151.1 (Arid3a); m=74/77; ncol2=6; w=6; offset=5; strand=D; shift=8; score=0.475297; --------ATyAAA--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 c 0 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0

MA0666.1_rc_shift5 (MSX1_rc)
; dyads_m16 versus MA0666.1_rc (MSX1_rc); m=75/77; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.468562; -----bTAATTrs---- ; cor=; Ncor= a 0 0 0 0 0 460.0 91.0 3073.0 3073.0 0.0 16.0 956.0 501.0 0 0 0 0 c 0 0 0 0 0 945.0 105.0 251.0 31.0 0.0 139.0 33.0 787.0 0 0 0 0 g 0 0 0 0 0 814.0 118.0 205.0 0.0 107.0 332.0 2117.0 1324.0 0 0 0 0 t 0 0 0 0 0 855.0 3073.0 63.0 0.0 3073.0 3073.0 82.0 461.0 0 0 0 0

MA0893.2_shift5 (GSX2)
; dyads_m16 versus MA0893.2 (GSX2); m=76/77; ncol2=8; w=8; offset=2; strand=D; shift=5; score=0.467828; -----symATTAr---- ; cor=; Ncor= a 0 0 0 0 0 816.0 503.0 2775.0 4998.0 0.0 0.0 4998.0 2158.0 0 0 0 0 c 0 0 0 0 0 2277.0 2611.0 2223.0 0.0 121.0 0.0 0.0 659.0 0 0 0 0 g 0 0 0 0 0 2721.0 400.0 95.0 708.0 0.0 77.0 1005.0 2840.0 0 0 0 0 t 0 0 0 0 0 0.0 4998.0 29.0 0.0 4998.0 4998.0 20.0 918.0 0 0 0 0

MA0681.2_shift4 (PHOX2B)
; dyads_m16 versus MA0681.2 (PHOX2B); m=77/77; ncol2=16; w=11; offset=1; strand=D; shift=4; score=0.465783; ----wwTAATCAAATTA ; cor=; Ncor= a 0 0 0 0 18530.0 19443.0 10344.0 42696.0 51239.0 1742.0 2451.0 43074.0 48550.0 50675.0 921.0 4103.0 42869.0 c 0 0 0 0 7301.0 7036.0 2748.0 1935.0 496.0 615.0 36619.0 1895.0 1453.0 451.0 329.0 1923.0 1936.0 g 0 0 0 0 8172.0 6744.0 2542.0 2289.0 508.0 467.0 1873.0 588.0 1418.0 761.0 372.0 1232.0 2155.0 t 0 0 0 0 19233.0 20013.0 37602.0 6316.0 993.0 50412.0 12293.0 7679.0 1815.0 1349.0 51614.0 45978.0 6276.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1 (oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1); m=0 (reference); ncol1=14; shift=0; ncol=14; cwGaCAGCTGtCwg ; Alignment reference a 8 14 5 23 0 35 0 0 0 0 6 0 16 4 c 21 3 4 3 35 0 0 35 0 0 3 26 3 2 g 2 3 26 3 0 0 35 0 0 35 3 5 3 21 t 4 15 0 6 0 0 0 0 35 0 23 4 13 8

MA1641.1_rc_shift1 (MYF5_rc)
; oligos_6nt_mkv2_m1 versus MA1641.1_rc (MYF5_rc); m=1/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.789341; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0

MA0796.1_rc_shift1 (TGIF1_rc)
; oligos_6nt_mkv2_m1 versus MA0796.1_rc (TGIF1_rc); m=2/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.777951; -TGACAGCTGTCA- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0

MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)
; oligos_6nt_mkv2_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.777235; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0

MA1571.1_rc_shift1 (TGIF2LX_rc)
; oligos_6nt_mkv2_m1 versus MA1571.1_rc (TGIF2LX_rc); m=4/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.777101; -TGACAgcTGTCA- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA1572.1_shift1 (TGIF2LY)
; oligos_6nt_mkv2_m1 versus MA1572.1 (TGIF2LY); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.767276; -TGACAgcTGTCA- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0

MA0797.1_shift1 (TGIF2)
; oligos_6nt_mkv2_m1 versus MA0797.1 (TGIF2); m=6/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.762727; -TGACAGsTGTCA- ; cor=; Ncor= a 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA0832.1_shift0 (Tcf21)
; oligos_6nt_mkv2_m1 versus MA0832.1 (Tcf21); m=7/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.762655; ryAACAGCTGTTry ; cor=; Ncor= a 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA0500.2_rc_shift1 (MYOG_rc)
; oligos_6nt_mkv2_m1 versus MA0500.2_rc (MYOG_rc); m=8/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.734969; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1621.1_shift0 (Rbpjl)
; oligos_6nt_mkv2_m1 versus MA1621.1 (Rbpjl); m=9/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.732238; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0

MA0783.1_shift1 (PKNOX2)
; oligos_6nt_mkv2_m1 versus MA0783.1 (PKNOX2); m=10/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.726027; -TGACAGsTGTCA- ; cor=; Ncor= a 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA0499.2_rc_shift0 (MYOD1_rc)
; oligos_6nt_mkv2_m1 versus MA0499.2_rc (MYOD1_rc); m=11/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.694824; rkrACAGGTGcwg- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1618.1_rc_shift0 (Ptf1a_rc)
; oligos_6nt_mkv2_m1 versus MA1618.1_rc (Ptf1a_rc); m=12/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.682986; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA0521.1_shift2 (Tcf12)
; oligos_6nt_mkv2_m1 versus MA0521.1 (Tcf12); m=13/29; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.68082; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1467.1_shift2 (ATOH1(var.2))
; oligos_6nt_mkv2_m1 versus MA1467.1 (ATOH1(var.2)); m=14/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.665011; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv2_m1 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.658524; -rmaCAGGTGtky- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1472.1_shift2 (BHLHA15(var.2))
; oligos_6nt_mkv2_m1 versus MA1472.1 (BHLHA15(var.2)); m=16/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.635313; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1635.1_shift2 (BHLHE22(var.2))
; oligos_6nt_mkv2_m1 versus MA1635.1 (BHLHE22(var.2)); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score= 0.6251; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1593.1_rc_shift1 (ZNF317_rc)
; oligos_6nt_mkv2_m1 versus MA1593.1_rc (ZNF317_rc); m=18/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.618668; -wrTCTGCTGTyw- ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0

MA1100.2_shift2 (ASCL1)
; oligos_6nt_mkv2_m1 versus MA1100.2 (ASCL1); m=19/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.604177; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; oligos_6nt_mkv2_m1 versus MA0665.1_rc (MSC_rc); m=20/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.601842; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA0691.1_shift2 (TFAP4)
; oligos_6nt_mkv2_m1 versus MA0691.1 (TFAP4); m=21/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.600639; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0816.1_shift2 (Ascl2)
; oligos_6nt_mkv2_m1 versus MA0816.1 (Ascl2); m=22/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.592984; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0667.1_shift2 (MYF6)
; oligos_6nt_mkv2_m1 versus MA0667.1 (MYF6); m=23/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.579665; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0

MA0048.2_rc_shift2 (NHLH1_rc)
; oligos_6nt_mkv2_m1 versus MA0048.2_rc (NHLH1_rc); m=24/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.531769; --mGCAGCTGCg-- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0820.1_shift2 (FIGLA)
; oligos_6nt_mkv2_m1 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.526279; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0

MA1638.1_shift2 (HAND2)
; oligos_6nt_mkv2_m1 versus MA1638.1 (HAND2); m=26/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500439; --amCAGATGby-- ; cor=; Ncor= a 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; oligos_6nt_mkv2_m1 versus MA0774.1_rc (MEIS2_rc); m=27/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.461216; ------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0

MA0775.1_rc_shift6 (MEIS3_rc)
; oligos_6nt_mkv2_m1 versus MA0775.1_rc (MEIS3_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.421438; ------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0

MA0498.2_rc_shift7 (MEIS1_rc)
; oligos_6nt_mkv2_m1 versus MA0498.2_rc (MEIS1_rc); m=29/29; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.407782; -------cTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0

One-to-n matrix alignment; reference matrix: dyads_m21_shift2 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m21_shift2 (dyads_m21dyads_m21)
; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=14; shift=2; ncol=18; --ssAGCAGCTGCTss-- ; Alignment reference a 0 0 11 7 45 6 0 50 0 0 2 1 1 3 7 11 0 0 c 0 0 14 24 1 1 51 0 3 49 0 0 44 3 14 16 0 0 g 0 0 16 14 3 44 0 0 49 3 0 51 1 1 24 14 0 0 t 0 0 11 7 3 1 1 2 0 0 50 0 6 45 7 11 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; dyads_m21 versus MA0832.1_rc (Tcf21_rc); m=1/21; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.781897; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA0500.2_rc_shift3 (MYOG_rc)
; dyads_m21 versus MA0500.2_rc (MYOG_rc); m=2/21; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.776399; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1631.1_rc_shift2 (ASCL1(var.2)_rc)
; dyads_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/21; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.704272; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; dyads_m21 versus MA0816.1_rc (Ascl2_rc); m=4/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.685691; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0

MA0830.2_rc_shift2 (TCF4_rc)
; dyads_m21 versus MA0830.2_rc (TCF4_rc); m=5/21; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.684841; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; dyads_m21 versus MA0521.1_rc (Tcf12_rc); m=6/21; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.670011; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; dyads_m21 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.662798; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; dyads_m21 versus MA1641.1_rc (MYF5_rc); m=8/21; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.659974; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1100.2_shift4 (ASCL1)
; dyads_m21 versus MA1100.2 (ASCL1); m=9/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.634379; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; dyads_m21 versus MA0048.2_rc (NHLH1_rc); m=10/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.628128; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; dyads_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.606974; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; dyads_m21 versus MA0091.1_rc (TAL1::TCF3_rc); m=12/21; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.605532; ----AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; dyads_m21 versus MA1635.1 (BHLHE22(var.2)); m=13/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.601951; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; dyads_m21 versus MA0691.1 (TFAP4); m=14/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.58979; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0665.1_shift4 (MSC)
; dyads_m21 versus MA0665.1 (MSC); m=15/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.576689; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; dyads_m21 versus MA1529.1_rc (NHLH2_rc); m=16/21; ncol2=18; w=14; offset=-2; strand=R; shift=0; score=0.574977; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; dyads_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/21; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.560077; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; dyads_m21 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.558575; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0522.3_shift4 (TCF3)
; dyads_m21 versus MA0522.3 (TCF3); m=19/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.551891; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0

MA0667.1_shift4 (MYF6)
; dyads_m21 versus MA0667.1 (MYF6); m=20/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.529663; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; dyads_m21 versus MA0820.1_rc (FIGLA_rc); m=21/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.507949; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m5_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m5_shift0 (dyads_m5dyads_m5)
; dyads_m5 (dyads_m5dyads_m5); m=0 (reference); ncol1=14; shift=0; ncol=15; rvdGACAGCTGmsg- ; Alignment reference a 17 16 15 8 56 0 56 0 0 0 0 32 12 14 0 c 6 21 9 5 0 57 0 0 57 0 0 15 16 9 0 g 21 16 16 43 1 0 0 57 0 0 57 6 17 20 0 t 13 4 17 1 0 0 1 0 0 57 0 4 12 14 0

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m5 versus MA0499.2_rc (MYOD1_rc); m=1/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.780449; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1641.1_shift2 (MYF5)
; dyads_m5 versus MA1641.1 (MYF5); m=2/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.767391; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m5 versus MA1619.1 (Ptf1a(var.2)); m=3/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.764005; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m5 versus MA0500.2_rc (MYOG_rc); m=4/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.739626; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0521.1_shift3 (Tcf12)
; dyads_m5 versus MA0521.1 (Tcf12); m=5/33; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.732766; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; dyads_m5 versus MA0745.2_rc (SNAI2_rc); m=6/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.696588; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m5 versus MA1485.1_rc (FERD3L_rc); m=7/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.686234; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1593.1_shift2 (ZNF317)
; dyads_m5 versus MA1593.1 (ZNF317); m=8/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.684852; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA0832.1_shift1 (Tcf21)
; dyads_m5 versus MA0832.1 (Tcf21); m=9/33; ncol2=14; w=13; offset=1; strand=D; shift=1; score=0.680074; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1618.1_rc_shift1 (Ptf1a_rc)
; dyads_m5 versus MA1618.1_rc (Ptf1a_rc); m=10/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.665296; -dmaaCATCTGtkh- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; dyads_m5 versus MA1571.1_rc (TGIF2LX_rc); m=11/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.660091; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0796.1_shift2 (TGIF1)
; dyads_m5 versus MA0796.1 (TGIF1); m=12/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.655405; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; dyads_m5 versus MA1572.1_rc (TGIF2LY_rc); m=13/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.649862; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift2 (TGIF2)
; dyads_m5 versus MA0797.1 (TGIF2); m=14/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.642953; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; dyads_m5 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.637405; --rmaCAGGTGtky- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; dyads_m5 versus MA1621.1_rc (Rbpjl_rc); m=16/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.636397; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m5 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.627478; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m5 versus MA1635.1 (BHLHE22(var.2)); m=18/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.617048; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m5 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.616523; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m5 versus MA0691.1 (TFAP4); m=20/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.605343; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0783.1_shift2 (PKNOX2)
; dyads_m5 versus MA0783.1 (PKNOX2); m=21/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.604087; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m5 versus MA1100.2_rc (ASCL1_rc); m=22/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.589847; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m5 versus MA0816.1 (Ascl2); m=23/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.584999; ---arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0665.1_shift3 (MSC)
; dyads_m5 versus MA0665.1 (MSC); m=24/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.577946; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA1123.2_rc_shift2 (TWIST1_rc)
; dyads_m5 versus MA1123.2_rc (TWIST1_rc); m=25/33; ncol2=13; w=12; offset=2; strand=R; shift=2; score=0.571368; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA1109.1_shift2 (NEUROD1)
; dyads_m5 versus MA1109.1 (NEUROD1); m=26/33; ncol2=13; w=12; offset=2; strand=D; shift=2; score=0.567009; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m5 versus MA0667.1_rc (MYF6_rc); m=27/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.549301; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; dyads_m5 versus MA0048.2_rc (NHLH1_rc); m=28/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.54321; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; dyads_m5 versus MA0820.1_rc (FIGLA_rc); m=29/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.524983; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0100.3_rc_shift3 (MYB_rc)
; dyads_m5 versus MA0100.3_rc (MYB_rc); m=30/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.505351; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA0774.1_shift1 (MEIS2)
; dyads_m5 versus MA0774.1 (MEIS2); m=31/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.465593; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; dyads_m5 versus MA0775.1 (MEIS3); m=32/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.440218; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0498.2_shift1 (MEIS1)
; dyads_m5 versus MA0498.2 (MEIS1); m=33/33; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.416198; -wTGACAg------- ; cor=; Ncor= a 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4 (oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4); m=0 (reference); ncol1=14; shift=0; ncol=15; rswGACAGCTGmsg- ; Alignment reference a 17 14 15 8 56 0 57 0 0 0 0 32 12 14 0 c 5 22 9 5 0 57 0 0 57 0 1 15 15 9 0 g 22 17 14 43 1 0 0 57 0 0 56 6 18 20 0 t 13 4 19 1 0 0 0 0 0 57 0 4 12 14 0

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_7nt_mkv2_m4 versus MA0499.2_rc (MYOD1_rc); m=1/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.779513; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1641.1_shift2 (MYF5)
; oligos_7nt_mkv2_m4 versus MA1641.1 (MYF5); m=2/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.766674; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_7nt_mkv2_m4 versus MA1619.1 (Ptf1a(var.2)); m=3/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.763688; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_7nt_mkv2_m4 versus MA0500.2_rc (MYOG_rc); m=4/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.738873; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0521.1_shift3 (Tcf12)
; oligos_7nt_mkv2_m4 versus MA0521.1 (Tcf12); m=5/33; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.732791; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; oligos_7nt_mkv2_m4 versus MA0745.2_rc (SNAI2_rc); m=6/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.695653; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_7nt_mkv2_m4 versus MA1485.1_rc (FERD3L_rc); m=7/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.690879; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1593.1_shift2 (ZNF317)
; oligos_7nt_mkv2_m4 versus MA1593.1 (ZNF317); m=8/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.685233; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA0832.1_shift1 (Tcf21)
; oligos_7nt_mkv2_m4 versus MA0832.1 (Tcf21); m=9/33; ncol2=14; w=13; offset=1; strand=D; shift=1; score=0.67972; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1618.1_rc_shift1 (Ptf1a_rc)
; oligos_7nt_mkv2_m4 versus MA1618.1_rc (Ptf1a_rc); m=10/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.664653; -dmaaCATCTGtkh- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_7nt_mkv2_m4 versus MA1571.1_rc (TGIF2LX_rc); m=11/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.661301; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0796.1_shift2 (TGIF1)
; oligos_7nt_mkv2_m4 versus MA0796.1 (TGIF1); m=12/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.657281; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_7nt_mkv2_m4 versus MA1572.1_rc (TGIF2LY_rc); m=13/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.650697; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift2 (TGIF2)
; oligos_7nt_mkv2_m4 versus MA0797.1 (TGIF2); m=14/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.644676; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv2_m4 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.637146; --rmaCAGGTGtky- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_7nt_mkv2_m4 versus MA1621.1_rc (Rbpjl_rc); m=16/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.636134; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_7nt_mkv2_m4 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.62707; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_7nt_mkv2_m4 versus MA1635.1 (BHLHE22(var.2)); m=18/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.617133; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv2_m4 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.616278; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0783.1_shift2 (PKNOX2)
; oligos_7nt_mkv2_m4 versus MA0783.1 (PKNOX2); m=20/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.605879; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA0691.1_shift3 (TFAP4)
; oligos_7nt_mkv2_m4 versus MA0691.1 (TFAP4); m=21/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.60516; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_7nt_mkv2_m4 versus MA1100.2_rc (ASCL1_rc); m=22/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.589207; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_7nt_mkv2_m4 versus MA0816.1 (Ascl2); m=23/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.584258; ---arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0665.1_shift3 (MSC)
; oligos_7nt_mkv2_m4 versus MA0665.1 (MSC); m=24/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.577869; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA1123.2_rc_shift2 (TWIST1_rc)
; oligos_7nt_mkv2_m4 versus MA1123.2_rc (TWIST1_rc); m=25/33; ncol2=13; w=12; offset=2; strand=R; shift=2; score=0.570988; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA1109.1_shift2 (NEUROD1)
; oligos_7nt_mkv2_m4 versus MA1109.1 (NEUROD1); m=26/33; ncol2=13; w=12; offset=2; strand=D; shift=2; score=0.565802; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_7nt_mkv2_m4 versus MA0667.1_rc (MYF6_rc); m=27/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.54889; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; oligos_7nt_mkv2_m4 versus MA0048.2_rc (NHLH1_rc); m=28/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.544579; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_7nt_mkv2_m4 versus MA0820.1_rc (FIGLA_rc); m=29/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.524925; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0100.3_rc_shift3 (MYB_rc)
; oligos_7nt_mkv2_m4 versus MA0100.3_rc (MYB_rc); m=30/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.505315; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA0774.1_shift1 (MEIS2)
; oligos_7nt_mkv2_m4 versus MA0774.1 (MEIS2); m=31/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.469703; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; oligos_7nt_mkv2_m4 versus MA0775.1 (MEIS3); m=32/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.444033; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0498.2_shift1 (MEIS1)
; oligos_7nt_mkv2_m4 versus MA0498.2 (MEIS1); m=33/33; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.419333; -wTGACAg------- ; cor=; Ncor= a 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m24_shift4 ; 50 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m24_shift4 (oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24)
; oligos_8nt_mkv2_m24 (oligos_8nt_mkv2_m24oligos_8nt_mkv2_m24); m=0 (reference); ncol1=12; shift=4; ncol=17; ----wwTAAATAAAaw- ; Alignment reference a 0 0 0 0 11 13 1 31 31 23 1 29 29 28 16 11 0 c 0 0 0 0 4 1 1 0 0 1 0 0 2 0 4 6 0 g 0 0 0 0 3 6 2 0 0 1 1 2 1 2 5 2 0 t 0 0 0 0 14 12 28 1 1 7 30 1 0 2 7 13 0

MA0703.2_rc_shift5 (LMX1B_rc)
; oligos_8nt_mkv2_m24 versus MA0703.2_rc (LMX1B_rc); m=1/49; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.77682; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0

MA1125.1_shift4 (ZNF384)
; oligos_8nt_mkv2_m24 versus MA1125.1 (ZNF384); m=2/49; ncol2=12; w=12; offset=0; strand=D; shift=4; score=0.70533; ----wwwmAAAAAAaa- ; cor=; Ncor= a 0 0 0 0 9460.0 9116.0 9522.0 13125.0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 4945.0 7025.0 3456.0 7691.0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 5650.0 5133.0 4678.0 4721.0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 10378.0 9159.0 12777.0 4896.0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0

MA0621.1_rc_shift4 (mix-a_rc)
; oligos_8nt_mkv2_m24 versus MA0621.1_rc (mix-a_rc); m=3/49; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.697916; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0

MA0601.1_rc_shift5 (Arid3b_rc)
; oligos_8nt_mkv2_m24 versus MA0601.1_rc (Arid3b_rc); m=4/49; ncol2=11; w=11; offset=1; strand=R; shift=5; score=0.679518; -----ttwATTAAtwt- ; cor=; Ncor= a 0 0 0 0 0 216.0 170.0 498.0 911.0 89.0 0.0 1000.0 895.0 238.0 566.0 177.0 0 c 0 0 0 0 0 216.0 170.0 73.0 0.0 0.0 0.0 0.0 0.0 34.0 80.0 177.0 0 g 0 0 0 0 0 216.0 170.0 168.0 0.0 0.0 0.0 0.0 0.0 119.0 80.0 177.0 0 t 0 0 0 0 0 351.0 490.0 262.0 89.0 911.0 1000.0 0.0 104.0 609.0 273.0 468.0 0

MA1463.1_shift4 (ARGFX)
; oligos_8nt_mkv2_m24 versus MA1463.1 (ARGFX); m=5/49; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.632445; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0

MA0707.1_shift4 (MNX1)
; oligos_8nt_mkv2_m24 versus MA0707.1 (MNX1); m=6/49; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.630498; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0

MA0901.2_shift4 (HOXB13)
; oligos_8nt_mkv2_m24 versus MA0901.2 (HOXB13); m=7/49; ncol2=14; w=12; offset=0; strand=D; shift=4; score= 0.6133; ----wwcCAATAAAAww ; cor=; Ncor= a 0 0 0 0 31357.0 27207.0 11896.0 4212.0 66409.0 73044.0 421.0 73612.0 75997.0 76077.0 70230.0 22968.0 26156.0 c 0 0 0 0 10859.0 13275.0 47674.0 65312.0 4611.0 726.0 550.0 523.0 599.0 760.0 2465.0 12415.0 13152.0 g 0 0 0 0 13066.0 15206.0 9096.0 582.0 351.0 1913.0 586.0 1083.0 490.0 625.0 1882.0 7376.0 11759.0 t 0 0 0 0 23432.0 23026.0 10048.0 8608.0 7343.0 3031.0 77157.0 3496.0 1628.0 1252.0 4137.0 35955.0 27647.0

MA0634.1_rc_shift4 (ALX3_rc)
; oligos_8nt_mkv2_m24 versus MA0634.1_rc (ALX3_rc); m=8/49; ncol2=10; w=10; offset=0; strand=R; shift=4; score=0.59369; ----kyTAATTrrr--- ; cor=; Ncor= a 0 0 0 0 1168.0 1403.0 977.0 7877.0 7877.0 231.0 629.0 4510.0 2337.0 3390.0 0 0 0 c 0 0 0 0 1503.0 2205.0 87.0 239.0 8.0 141.0 885.0 345.0 1150.0 1062.0 0 0 0 g 0 0 0 0 2446.0 1671.0 449.0 729.0 72.0 317.0 506.0 3367.0 3402.0 2174.0 0 0 0 t 0 0 0 0 2759.0 2597.0 7877.0 697.0 76.0 7877.0 7877.0 794.0 987.0 1251.0 0 0 0

MA1487.1_shift3 (FOXE1)
; oligos_8nt_mkv2_m24 versus MA1487.1 (FOXE1); m=9/49; ncol2=15; w=12; offset=-1; strand=D; shift=3; score=0.573761; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0

MA0702.2_rc_shift5 (LMX1A_rc)
; oligos_8nt_mkv2_m24 versus MA0702.2_rc (LMX1A_rc); m=10/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.560486; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0

MA0715.1_rc_shift6 (PROP1_rc)
; oligos_8nt_mkv2_m24 versus MA0715.1_rc (PROP1_rc); m=11/49; ncol2=11; w=10; offset=2; strand=R; shift=6; score=0.548943; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0

MA0846.1_shift2 (FOXC2)
; oligos_8nt_mkv2_m24 versus MA0846.1 (FOXC2); m=12/49; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.541231; --wAwrTAAAYAww--- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0

MA0851.1_shift0 (Foxj3)
; oligos_8nt_mkv2_m24 versus MA0851.1 (Foxj3); m=13/49; ncol2=17; w=12; offset=-4; strand=D; shift=0; score=0.537628; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0

MA0704.1_rc_shift5 (Lhx4_rc)
; oligos_8nt_mkv2_m24 versus MA0704.1_rc (Lhx4_rc); m=14/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.518199; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 275.0 135.0 2896.0 2896.0 155.0 255.0 2896.0 1161.0 0 0 0 0 c 0 0 0 0 0 857.0 316.0 57.0 0.0 0.0 309.0 0.0 495.0 0 0 0 0 g 0 0 0 0 0 449.0 39.0 446.0 0.0 0.0 428.0 912.0 817.0 0 0 0 0 t 0 0 0 0 0 1314.0 2896.0 0.0 0.0 2896.0 2896.0 217.0 422.0 0 0 0 0

MA0853.1_shift1 (Alx4)
; oligos_8nt_mkv2_m24 versus MA0853.1 (Alx4); m=15/49; ncol2=17; w=12; offset=-3; strand=D; shift=1; score=0.516335; -cgcryTAATTArthas ; cor=; Ncor= a 0 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 17.0 29.0 36.0 23.0 c 0 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 23.0 28.0 23.0 29.0 g 0 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 18.0 13.0 19.0 25.0 t 0 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 42.0 30.0 22.0 23.0

MA0674.1_shift5 (NKX6-1)
; oligos_8nt_mkv2_m24 versus MA0674.1 (NKX6-1); m=16/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.512068; -----sYmATTAa---- ; cor=; Ncor= a 0 0 0 0 0 403.0 0.0 1407.0 2212.0 0.0 58.0 2212.0 1450.0 0 0 0 0 c 0 0 0 0 0 695.0 573.0 805.0 200.0 0.0 45.0 27.0 294.0 0 0 0 0 g 0 0 0 0 0 734.0 0.0 0.0 12.0 0.0 0.0 132.0 142.0 0 0 0 0 t 0 0 0 0 0 381.0 1640.0 195.0 40.0 2212.0 2212.0 17.0 327.0 0 0 0 0

MA1519.1_shift5 (LHX5)
; oligos_8nt_mkv2_m24 versus MA1519.1 (LHX5); m=17/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.505037; -----sYAATTAa---- ; cor=; Ncor= a 0 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 2749.0 0 0 0 0 c 0 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 1576.0 0 0 0 0 g 0 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 1483.0 0 0 0 0 t 0 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0 1333.0 0 0 0 0

MA0854.1_shift1 (Alx1)
; oligos_8nt_mkv2_m24 versus MA0854.1 (Alx1); m=18/49; ncol2=17; w=12; offset=-3; strand=D; shift=1; score=0.498997; -cgmryTAATTArtymc ; cor=; Ncor= a 0 19.0 7.0 38.0 43.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 15.0 23.0 39.0 24.0 c 0 44.0 21.0 33.0 9.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 21.0 32.0 31.0 29.0 g 0 17.0 65.0 14.0 31.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 11.0 16.0 12.0 23.0 t 0 20.0 7.0 15.0 17.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 53.0 29.0 17.0 24.0

MA0722.1_rc_shift5 (VAX1_rc)
; oligos_8nt_mkv2_m24 versus MA0722.1_rc (VAX1_rc); m=19/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.497804; -----rTaATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1433.0 398.0 5253.0 5253.0 133.0 302.0 5253.0 2479.0 0 0 0 0 c 0 0 0 0 0 933.0 1332.0 1951.0 213.0 46.0 189.0 101.0 455.0 0 0 0 0 g 0 0 0 0 0 1911.0 87.0 321.0 86.0 153.0 863.0 995.0 2775.0 0 0 0 0 t 0 0 0 0 0 977.0 5253.0 508.0 297.0 5253.0 5253.0 679.0 447.0 0 0 0 0

MA0032.2_shift2 (FOXC1)
; oligos_8nt_mkv2_m24 versus MA0032.2 (FOXC1); m=20/49; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.497529; --wAwRTMAAyAw---- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0

MA0725.1_rc_shift5 (VSX1_rc)
; oligos_8nt_mkv2_m24 versus MA0725.1_rc (VSX1_rc); m=21/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.494216; -----vTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3732.0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 0 0 0 0 c 0 0 0 0 0 3658.0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 0 0 0 0 g 0 0 0 0 0 3555.0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 0 0 0 0 t 0 0 0 0 0 2626.0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0 0 0 0 0

MA0845.1_shift2 (FOXB1)
; oligos_8nt_mkv2_m24 versus MA0845.1 (FOXB1); m=22/49; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.494071; --wAwGTMAAyAt---- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0 0 0

MA1481.1_rc_shift5 (DRGX_rc)
; oligos_8nt_mkv2_m24 versus MA1481.1_rc (DRGX_rc); m=23/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.490792; -----sTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 3105.0 144.0 14867.0 14867.0 0.0 0.0 8870.0 6687.0 0 0 0 0 c 0 0 0 0 0 3995.0 962.0 209.0 0.0 0.0 2037.0 1111.0 2692.0 0 0 0 0 g 0 0 0 0 0 4651.0 17.0 813.0 0.0 0.0 501.0 5997.0 8180.0 0 0 0 0 t 0 0 0 0 0 3117.0 14867.0 0.0 0.0 14867.0 14867.0 1079.0 1172.0 0 0 0 0

MA0726.1_rc_shift5 (VSX2_rc)
; oligos_8nt_mkv2_m24 versus MA0726.1_rc (VSX2_rc); m=24/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.490778; -----cTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3387.0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 0 0 0 0 c 0 0 0 0 0 4288.0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 0 0 0 0 g 0 0 0 0 0 3243.0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 0 0 0 0 t 0 0 0 0 0 2891.0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0 0 0 0 0

MA0075.3_shift5 (PRRX2)
; oligos_8nt_mkv2_m24 versus MA0075.3 (PRRX2); m=25/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.490499; -----cyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 778.0 122.0 6720.0 6720.0 0.0 0.0 6720.0 2291.0 0 0 0 0 c 0 0 0 0 0 6720.0 2008.0 29.0 0.0 0.0 0.0 1.0 1271.0 0 0 0 0 g 0 0 0 0 0 1613.0 131.0 3.0 0.0 0.0 0.0 399.0 1862.0 0 0 0 0 t 0 0 0 0 0 1933.0 4711.0 0.0 0.0 6720.0 6720.0 0.0 1295.0 0 0 0 0

MA0654.1_shift5 (ISX)
; oligos_8nt_mkv2_m24 versus MA0654.1 (ISX); m=26/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.490408; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 318.0 10.0 2065.0 2065.0 0.0 0.0 2065.0 770.0 0 0 0 0 c 0 0 0 0 0 863.0 1003.0 48.0 16.0 0.0 0.0 0.0 307.0 0 0 0 0 g 0 0 0 0 0 364.0 0.0 5.0 0.0 0.0 24.0 0.0 704.0 0 0 0 0 t 0 0 0 0 0 520.0 1061.0 24.0 10.0 2065.0 2065.0 49.0 283.0 0 0 0 0

MA0723.1_rc_shift5 (VAX2_rc)
; oligos_8nt_mkv2_m24 versus MA0723.1_rc (VAX2_rc); m=27/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.486566; -----gTmATTAr---- ; cor=; Ncor= a 0 0 0 0 0 3069.0 562.0 14297.0 14297.0 218.0 565.0 14297.0 6482.0 0 0 0 0 c 0 0 0 0 0 2869.0 3818.0 5673.0 564.0 94.0 414.0 221.0 1384.0 0 0 0 0 g 0 0 0 0 0 5648.0 179.0 987.0 161.0 213.0 2781.0 2823.0 7816.0 0 0 0 0 t 0 0 0 0 0 2711.0 14297.0 1341.0 576.0 14297.0 14297.0 1410.0 921.0 0 0 0 0

MA0716.1_shift5 (PRRX1)
; oligos_8nt_mkv2_m24 versus MA0716.1 (PRRX1); m=28/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.486009; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 4132.0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 9498.0 0 0 0 0 c 0 0 0 0 0 9063.0 11122.0 1088.0 503.0 3.0 2302.0 644.0 4269.0 0 0 0 0 g 0 0 0 0 0 4339.0 1121.0 1776.0 202.0 0.0 1004.0 136.0 6366.0 0 0 0 0 t 0 0 0 0 0 6364.0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 3765.0 0 0 0 0

MA0721.1_rc_shift5 (UNCX_rc)
; oligos_8nt_mkv2_m24 versus MA0721.1_rc (UNCX_rc); m=29/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.485147; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 4810.0 3885.0 36926.0 36926.0 890.0 2629.0 20126.0 12871.0 0 0 0 0 c 0 0 0 0 0 10480.0 731.0 1782.0 117.0 420.0 4582.0 2086.0 5711.0 0 0 0 0 g 0 0 0 0 0 7825.0 2211.0 3958.0 806.0 1302.0 2540.0 16800.0 13363.0 0 0 0 0 t 0 0 0 0 0 13811.0 36926.0 3111.0 481.0 36926.0 36926.0 3975.0 4980.0 0 0 0 0

MA0614.1_shift5 (Foxj2)
; oligos_8nt_mkv2_m24 versus MA0614.1 (Foxj2); m=30/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.481831; -----rTAAACAa---- ; cor=; Ncor= a 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 c 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 g 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 t 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0

MA1577.1_shift5 (TLX2)
; oligos_8nt_mkv2_m24 versus MA1577.1 (TLX2); m=31/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.480015; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 997.0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 2184.0 0 0 0 0 c 0 0 0 0 0 2572.0 7799.0 0.0 0.0 0.0 0.0 0.0 1323.0 0 0 0 0 g 0 0 0 0 0 1851.0 1112.0 80.0 0.0 0.0 0.0 0.0 3439.0 0 0 0 0 t 0 0 0 0 0 2379.0 8156.0 0.0 0.0 7799.0 7799.0 0.0 852.0 0 0 0 0

MA0720.1_shift5 (Shox2)
; oligos_8nt_mkv2_m24 versus MA0720.1 (Shox2); m=32/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.479418; -----yyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 2390.0 979.0 18179.0 18179.0 29.0 597.0 18179.0 6542.0 0 0 0 0 c 0 0 0 0 0 7695.0 9027.0 626.0 138.0 12.0 545.0 193.0 3021.0 0 0 0 0 g 0 0 0 0 0 3292.0 228.0 426.0 3.0 0.0 870.0 36.0 6337.0 0 0 0 0 t 0 0 0 0 0 4802.0 9152.0 766.0 79.0 18179.0 18179.0 895.0 2278.0 0 0 0 0

MA0675.1_shift5 (NKX6-2)
; oligos_8nt_mkv2_m24 versus MA0675.1 (NKX6-2); m=33/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.478657; -----symATTAa---- ; cor=; Ncor= a 0 0 0 0 0 3761.0 1172.0 11354.0 18935.0 584.0 2468.0 18935.0 9971.0 0 0 0 0 c 0 0 0 0 0 6072.0 7831.0 7581.0 310.0 0.0 2233.0 370.0 3457.0 0 0 0 0 g 0 0 0 0 0 5228.0 814.0 1053.0 191.0 0.0 551.0 775.0 1660.0 0 0 0 0 t 0 0 0 0 0 3874.0 11104.0 2582.0 546.0 18935.0 18935.0 678.0 3846.0 0 0 0 0

MA0701.2_shift5 (LHX9)
; oligos_8nt_mkv2_m24 versus MA0701.2 (LHX9); m=34/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.476452; -----CyAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 2261.0 0 0 0 0 c 0 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 1013.0 0 0 0 0 g 0 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 1946.0 0 0 0 0 t 0 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0 856.0 0 0 0 0

MA0612.2_rc_shift5 (EMX1_rc)
; oligos_8nt_mkv2_m24 versus MA0612.2_rc (EMX1_rc); m=35/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.476022; -----sTAATTAs---- ; cor=; Ncor= a 0 0 0 0 0 1062.0 0.0 9544.0 9544.0 0.0 0.0 7281.0 1777.0 0 0 0 0 c 0 0 0 0 0 4516.0 0.0 933.0 0.0 0.0 0.0 0.0 3066.0 0 0 0 0 g 0 0 0 0 0 2633.0 0.0 0.0 0.0 0.0 1235.0 2263.0 3425.0 0 0 0 0 t 0 0 0 0 0 1333.0 9544.0 0.0 0.0 9544.0 9544.0 19.0 1276.0 0 0 0 0

MA0900.2_shift5 (HOXA2)
; oligos_8nt_mkv2_m24 versus MA0900.2 (HOXA2); m=36/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.475984; -----sTMATTAs---- ; cor=; Ncor= a 0 0 0 0 0 8880.0 0.0 39674.0 56949.0 0.0 0.0 56949.0 10641.0 0 0 0 0 c 0 0 0 0 0 19452.0 3636.0 17275.0 0.0 0.0 0.0 0.0 16330.0 0 0 0 0 g 0 0 0 0 0 22686.0 0.0 290.0 0.0 0.0 0.0 2052.0 22246.0 0 0 0 0 t 0 0 0 0 0 5931.0 56949.0 0.0 0.0 56949.0 56949.0 0.0 7731.0 0 0 0 0

MA1489.1_shift5 (FOXN3)
; oligos_8nt_mkv2_m24 versus MA1489.1 (FOXN3); m=37/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.475121; -----GTAAACAA---- ; cor=; Ncor= a 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 c 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 g 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 t 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0

MA0132.2_shift5 (PDX1)
; oligos_8nt_mkv2_m24 versus MA0132.2 (PDX1); m=38/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.474875; -----symATTAr---- ; cor=; Ncor= a 0 0 0 0 0 1483.0 292.0 4839.0 7130.0 0.0 0.0 7130.0 2181.0 0 0 0 0 c 0 0 0 0 0 2206.0 2469.0 2291.0 45.0 0.0 0.0 0.0 1216.0 0 0 0 0 g 0 0 0 0 0 2441.0 0.0 185.0 0.0 0.0 0.0 0.0 2881.0 0 0 0 0 t 0 0 0 0 0 999.0 4661.0 78.0 0.0 7130.0 7130.0 0.0 852.0 0 0 0 0

MA0630.1_shift5 (SHOX)
; oligos_8nt_mkv2_m24 versus MA0630.1 (SHOX); m=39/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.473064; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 179.0 74.0 852.0 991.0 15.0 98.0 416.0 301.0 0 0 0 0 c 0 0 0 0 0 301.0 30.0 48.0 2.0 15.0 50.0 48.0 187.0 0 0 0 0 g 0 0 0 0 0 162.0 9.0 55.0 5.0 27.0 84.0 424.0 379.0 0 0 0 0 t 0 0 0 0 0 357.0 886.0 45.0 2.0 943.0 768.0 111.0 133.0 0 0 0 0

MA0613.1_shift5 (FOXG1)
; oligos_8nt_mkv2_m24 versus MA0613.1 (FOXG1); m=40/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.470997; -----rTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 g 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0

MA0885.1_shift5 (Dlx2)
; oligos_8nt_mkv2_m24 versus MA0885.1 (Dlx2); m=41/49; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.468199; -----syAATTAw---- ; cor=; Ncor= a 0 0 0 0 0 3170.0 543.0 13749.0 13749.0 0.0 260.0 13749.0 3710.0 0 0 0 0 c 0 0 0 0 0 3565.0 7409.0 684.0 289.0 0.0 393.0 46.0 3277.0 0 0 0 0 g 0 0 0 0 0 4739.0 135.0 488.0 15.0 0.0 565.0 55.0 3065.0 0 0 0 0 t 0 0 0 0 0 2275.0 6340.0 524.0 179.0 13749.0 13749.0 579.0 3697.0 0 0 0 0

MA0717.1_rc_shift5 (RAX2_rc)
; oligos_8nt_mkv2_m24 versus MA0717.1_rc (RAX2_rc); m=42/49; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.46763; -----yTAATTrr---- ; cor=; Ncor= a 0 0 0 0 0 5601.0 4258.0 38860.0 38860.0 1030.0 2421.0 19215.0 10666.0 0 0 0 0 c 0 0 0 0 0 12362.0 360.0 2513.0 125.0 757.0 4490.0 1688.0 7049.0 0 0 0 0 g 0 0 0 0 0 7487.0 2644.0 4232.0 738.0 1523.0 3060.0 19645.0 15810.0 0 0 0 0 t 0 0 0 0 0 13411.0 38860.0 2167.0 270.0 38860.0 38860.0 3558.0 5334.0 0 0 0 0

MA0033.2_shift5 (FOXL1)
; oligos_8nt_mkv2_m24 versus MA0033.2 (FOXL1); m=43/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.463967; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0

MA0041.1_rc_shift7 (Foxd3_rc)
; oligos_8nt_mkv2_m24 versus MA0041.1_rc (Foxd3_rc); m=44/49; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.446698; -------RAAhAAAYAw ; cor=; Ncor= a 0 0 0 0 0 0 0 35.0 40.0 34.0 12.0 32.0 46.0 47.0 1.0 42.0 22.0 c 0 0 0 0 0 0 0 0.0 4.0 0.0 21.0 10.0 0.0 0.0 34.0 0.0 0.0 g 0 0 0 0 0 0 0 12.0 2.0 7.0 0.0 0.0 0.0 0.0 0.0 4.0 1.0 t 0 0 0 0 0 0 0 0.0 1.0 6.0 14.0 5.0 1.0 0.0 12.0 1.0 24.0

MA0850.1_shift5 (FOXP3)
; oligos_8nt_mkv2_m24 versus MA0850.1 (FOXP3); m=45/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.433706; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_8nt_mkv2_m24 versus MA0848.1 (FOXO4); m=46/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.427366; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0

MA0847.2_shift0 (FOXD2)
; oligos_8nt_mkv2_m24 versus MA0847.2 (FOXD2); m=47/49; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.425834; sywAwRTAAAYAw---- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0 0 0

MA0042.2_shift5 (FOXI1)
; oligos_8nt_mkv2_m24 versus MA0042.2 (FOXI1); m=48/49; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.423589; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0 0

MA0040.1_rc_shift8 (Foxq1_rc)
; oligos_8nt_mkv2_m24 versus MA0040.1_rc (Foxq1_rc); m=49/49; ncol2=11; w=8; offset=4; strand=R; shift=8; score=0.411168; --------wATAAACAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 c 0 0 0 0 0 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 g 0 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m13_shift0 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m13_shift0 (oligos_7nt_mkv2_m13oligos_7nt_mkv2_m13)
; oligos_7nt_mkv2_m13 (oligos_7nt_mkv2_m13oligos_7nt_mkv2_m13); m=0 (reference); ncol1=16; shift=0; ncol=16; grmArCAGCTGTCwyc ; Alignment reference a 4 8 6 20 13 0 21 0 1 0 0 0 0 7 3 5 c 4 2 10 1 1 21 0 1 19 0 0 2 16 4 9 7 g 8 6 4 0 6 0 0 20 1 0 21 0 3 2 3 4 t 5 5 1 0 1 0 0 0 0 21 0 19 2 8 6 5

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_7nt_mkv2_m13 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.775343; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift1 (FERD3L)
; oligos_7nt_mkv2_m13 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.70303; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_7nt_mkv2_m13 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.678081; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1621.1_shift1 (Rbpjl)
; oligos_7nt_mkv2_m13 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.67056; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_7nt_mkv2_m13 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.666795; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_7nt_mkv2_m13 versus MA0499.2 (MYOD1); m=6/29; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.65374; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; oligos_7nt_mkv2_m13 versus MA1618.1_rc (Ptf1a_rc); m=7/29; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.645797; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_7nt_mkv2_m13 versus MA0500.2_rc (MYOG_rc); m=8/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.642879; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; oligos_7nt_mkv2_m13 versus MA1467.1 (ATOH1(var.2)); m=9/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.607389; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_7nt_mkv2_m13 versus MA0521.1_rc (Tcf12_rc); m=10/29; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.603886; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)
; oligos_7nt_mkv2_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=11/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.579466; --rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_7nt_mkv2_m13 versus MA0745.2 (SNAI2); m=12/29; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.57898; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA0665.1_rc_shift3 (MSC_rc)
; oligos_7nt_mkv2_m13 versus MA0665.1_rc (MSC_rc); m=13/29; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.577011; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_7nt_mkv2_m13 versus MA1472.1 (BHLHA15(var.2)); m=14/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.564009; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0667.1_shift3 (MYF6)
; oligos_7nt_mkv2_m13 versus MA0667.1 (MYF6); m=15/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.562864; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; oligos_7nt_mkv2_m13 versus MA0091.1 (TAL1::TCF3); m=16/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.551752; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_7nt_mkv2_m13 versus MA0816.1 (Ascl2); m=17/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.54899; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_7nt_mkv2_m13 versus MA0691.1 (TFAP4); m=18/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.546378; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; oligos_7nt_mkv2_m13 versus MA0796.1_rc (TGIF1_rc); m=19/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.544388; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_7nt_mkv2_m13 versus MA1571.1_rc (TGIF2LX_rc); m=20/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.543128; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; oligos_7nt_mkv2_m13 versus MA0797.1_rc (TGIF2_rc); m=21/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.532614; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1572.1_shift2 (TGIF2LY)
; oligos_7nt_mkv2_m13 versus MA1572.1 (TGIF2LY); m=22/29; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.532309; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)
; oligos_7nt_mkv2_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/29; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.515963; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA1100.2_shift3 (ASCL1)
; oligos_7nt_mkv2_m13 versus MA1100.2 (ASCL1); m=24/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.514873; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_7nt_mkv2_m13 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.484372; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; oligos_7nt_mkv2_m13 versus MA0048.2_rc (NHLH1_rc); m=26/29; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.466202; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1570.1_shift3 (TFAP4(var.2))
; oligos_7nt_mkv2_m13 versus MA1570.1 (TFAP4(var.2)); m=27/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.439809; ---ahCAyrTGkt--- ; cor=; Ncor= a 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; oligos_7nt_mkv2_m13 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.417141; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

MA0775.1_rc_shift7 (MEIS3_rc)
; oligos_7nt_mkv2_m13 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.403938; -------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m15_shift4 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m15_shift4 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15)
; oligos_7nt_mkv2_m15 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15); m=0 (reference); ncol1=11; shift=4; ncol=16; ----ssCCCGCCGsg- ; Alignment reference a 0 0 0 0 4 4 0 1 0 0 3 0 0 3 3 0 c 0 0 0 0 7 11 23 24 26 0 19 23 2 10 5 0 g 0 0 0 0 11 8 3 2 1 27 5 4 25 11 18 0 t 0 0 0 0 5 4 1 0 0 0 0 0 0 3 1 0

MA1513.1_shift4 (KLF15)
; oligos_7nt_mkv2_m15 versus MA1513.1 (KLF15); m=1/7; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.773409; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA0471.2_rc_shift2 (E2F6_rc)
; oligos_7nt_mkv2_m15 versus MA0471.2_rc (E2F6_rc); m=2/7; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.600109; --syTTCCCGCCyyc- ; cor=; Ncor= a 0 0 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 c 0 0 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 g 0 0 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 t 0 0 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0

MA0696.1_shift1 (ZIC1)
; oligos_7nt_mkv2_m15 versus MA0696.1 (ZIC1); m=3/7; ncol2=14; w=11; offset=-3; strand=D; shift=1; score=0.555583; -gACCCCCyGCTGyG- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0

MA0751.1_shift1 (ZIC4)
; oligos_7nt_mkv2_m15 versus MA0751.1 (ZIC4); m=4/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.551324; -krCCCCCyGykGyGh ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0

MA0697.1_shift1 (ZIC3)
; oligos_7nt_mkv2_m15 versus MA0697.1 (ZIC3); m=5/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.550655; -gACCCCCYGCtGyGh ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0

MA1584.1_shift0 (ZIC5)
; oligos_7nt_mkv2_m15 versus MA1584.1 (ZIC5); m=6/7; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.518347; mgACCCCCCGCtGyGm ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0

MA1122.1_rc_shift2 (TFDP1_rc)
; oligos_7nt_mkv2_m15 versus MA1122.1_rc (TFDP1_rc); m=7/7; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.498983; --ssTTCCCGCsc--- ; cor=; Ncor= a 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 c 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 g 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 t 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m22_shift3 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m22_shift3 (dyads_m22dyads_m22)
; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=10; shift=3; ncol=13; ---wmCAAATGst ; Alignment reference a 0 0 0 11 9 0 21 21 21 0 0 1 5 c 0 0 0 3 7 21 0 0 0 0 0 10 5 g 0 0 0 1 2 0 0 0 0 0 21 6 5 t 0 0 0 6 3 0 0 0 0 21 0 4 6

MA0461.2_shift3 (Atoh1)
; dyads_m22 versus MA0461.2 (Atoh1); m=1/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.772287; ---rmCATATGky ; cor=; Ncor= a 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0

MA1638.1_shift3 (HAND2)
; dyads_m22 versus MA1638.1 (HAND2); m=2/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.758422; ---amCAGATGby ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0

MA0633.1_rc_shift3 (Twist2_rc)
; dyads_m22 versus MA0633.1_rc (Twist2_rc); m=3/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.75634; ---mACATATGky ; cor=; Ncor= a 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 c 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 g 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 t 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0

MA1108.2_shift3 (MXI1)
; dyads_m22 versus MA1108.2 (MXI1); m=4/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.751815; ---rvCACATGkc ; cor=; Ncor= a 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 c 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 g 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 t 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0

MA1468.1_shift3 (ATOH7)
; dyads_m22 versus MA1468.1 (ATOH7); m=5/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.747184; ---AmCATATGky ; cor=; Ncor= a 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0

MA0818.1_shift3 (BHLHE22)
; dyads_m22 versus MA0818.1 (BHLHE22); m=6/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.744777; ---AmCATATGyy ; cor=; Ncor= a 0 0 0 520.0 189.0 6.0 520.0 0.0 520.0 11.0 0.0 4.0 36.0 c 0 0 0 26.0 229.0 520.0 6.0 2.0 4.0 48.0 2.0 193.0 254.0 g 0 0 0 172.0 99.0 0.0 24.0 0.0 2.0 0.0 520.0 123.0 21.0 t 0 0 0 21.0 4.0 0.0 8.0 520.0 2.0 520.0 4.0 201.0 520.0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; dyads_m22 versus MA1570.1_rc (TFAP4(var.2)_rc); m=7/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.741622; ---amCAyrTGdt ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0

MA0100.3_shift3 (MYB)
; dyads_m22 versus MA0100.3 (MYB); m=8/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.74109; ---mbCAACTGhm ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0

MA0826.1_shift3 (OLIG1)
; dyads_m22 versus MA0826.1 (OLIG1); m=9/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.740897; ---AmCATATGkT ; cor=; Ncor= a 0 0 0 11391.0 5931.0 52.0 11391.0 12.0 11391.0 195.0 0.0 12.0 490.0 c 0 0 0 240.0 4142.0 11391.0 1.0 15.0 80.0 175.0 0.0 2082.0 2812.0 g 0 0 0 1526.0 1321.0 0.0 139.0 113.0 17.0 0.0 11391.0 4568.0 257.0 t 0 0 0 205.0 0.0 0.0 80.0 11391.0 10.0 11391.0 74.0 4730.0 11391.0

MA0827.1_shift3 (OLIG3)
; dyads_m22 versus MA0827.1 (OLIG3); m=10/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.735691; ---AmCATATGby ; cor=; Ncor= a 0 0 0 1915.0 800.0 222.0 1915.0 0.0 1915.0 56.0 4.0 28.0 265.0 c 0 0 0 204.0 1115.0 1915.0 10.0 26.0 103.0 224.0 4.0 662.0 964.0 g 0 0 0 427.0 208.0 0.0 99.0 72.0 11.0 2.0 1915.0 904.0 176.0 t 0 0 0 132.0 6.0 3.0 22.0 1915.0 0.0 1915.0 275.0 1010.0 1915.0

MA0678.1_shift3 (OLIG2)
; dyads_m22 versus MA0678.1 (OLIG2); m=11/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.733957; ---AmCATATGky ; cor=; Ncor= a 0 0 0 1609.0 680.0 74.0 1609.0 0.0 1609.0 21.0 10.0 4.0 146.0 c 0 0 0 90.0 929.0 1609.0 2.0 0.0 22.0 159.0 3.0 396.0 689.0 g 0 0 0 283.0 142.0 4.0 53.0 0.0 18.0 0.0 1609.0 866.0 57.0 t 0 0 0 108.0 16.0 0.0 22.0 1609.0 4.0 1609.0 117.0 744.0 1609.0

MA0669.1_shift3 (NEUROG2)
; dyads_m22 versus MA0669.1 (NEUROG2); m=12/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.727348; ---raCATATGtY ; cor=; Ncor= a 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 c 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 g 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 t 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0

MA0623.2_shift3 (NEUROG1)
; dyads_m22 versus MA0623.2 (NEUROG1); m=13/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.726845; ---raCATATGky ; cor=; Ncor= a 0 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 c 0 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 g 0 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 t 0 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0

MA0668.1_rc_shift3 (NEUROD2_rc)
; dyads_m22 versus MA0668.1_rc (NEUROD2_rc); m=14/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.716048; ---rmCATATGky ; cor=; Ncor= a 0 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 c 0 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 g 0 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 t 0 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0

MA1524.1_rc_shift2 (MSGN1_rc)
; dyads_m22 versus MA1524.1_rc (MSGN1_rc); m=15/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.680842; --srmCAwwTGGy ; cor=; Ncor= a 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 c 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 g 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 t 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0

MA0607.1_rc_shift4 (Bhlha15_rc)
; dyads_m22 versus MA0607.1_rc (Bhlha15_rc); m=16/27; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.622381; ----aCATATGs- ; cor=; Ncor= a 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0

MA0817.1_shift2 (BHLHE23)
; dyads_m22 versus MA0817.1 (BHLHE23); m=17/27; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.618803; --aAmCATATGkT ; cor=; Ncor= a 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 c 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 g 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 t 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0

MA0091.1_rc_shift3 (TAL1::TCF3_rc)
; dyads_m22 versus MA0091.1_rc (TAL1::TCF3_rc); m=18/27; ncol2=12; w=10; offset=0; strand=R; shift=3; score=0.59928; ---AmCAKMTGkT ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0

MA1568.1_rc_shift2 (TCF21(var.2)_rc)
; dyads_m22 versus MA1568.1_rc (TCF21(var.2)_rc); m=19/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.591196; --yrmCATATGGt ; cor=; Ncor= a 0 0 105.0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 c 0 0 315.0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 g 0 0 150.0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 t 0 0 301.0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0

MA1642.1_shift1 (NEUROG2(var.2))
; dyads_m22 versus MA1642.1 (NEUROG2(var.2)); m=20/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.577374; -rrraCAGATGGy ; cor=; Ncor= a 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0

MA1618.1_shift2 (Ptf1a)
; dyads_m22 versus MA1618.1 (Ptf1a); m=21/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.567014; --dmaCAGATGtt ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0

MA1123.2_shift1 (TWIST1)
; dyads_m22 versus MA1123.2 (TWIST1); m=22/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.558119; -awwCCAGATGtb ; cor=; Ncor= a 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 c 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 g 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 t 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0

MA1109.1_shift2 (NEUROD1)
; dyads_m22 versus MA1109.1 (NEUROD1); m=23/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.549392; --graCAGATGGy ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0

MA0507.1_rc_shift0 (POU2F2_rc)
; dyads_m22 versus MA0507.1_rc (POU2F2_rc); m=24/27; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.54504; wyATGCAAATkmr ; cor=; Ncor= a 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 c 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 g 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 t 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0

MA0514.1_rc_shift1 (Sox3_rc)
; dyads_m22 versus MA0514.1_rc (Sox3_rc); m=25/27; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.487129; -rrrACAAAGG-- ; cor=; Ncor= a 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0

MA0792.1_shift1 (POU5F1B)
; dyads_m22 versus MA0792.1 (POU5F1B); m=26/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.418926; -TATGywAAT--- ; cor=; Ncor= a 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 0 c 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 0 g 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 0 t 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0 0

MA0789.1_shift1 (POU3F4)
; dyads_m22 versus MA0789.1 (POU3F4); m=27/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.408937; -TATGCwAAT--- ; cor=; Ncor= a 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 0 c 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 0 g 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 0 t 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift0 ; 32 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3 (oligos_7nt_mkv2_m3oligos_7nt_mkv2_m3); m=0 (reference); ncol1=16; shift=0; ncol=16; srsAACAGCTGTswmm ; Alignment reference a 3 7 4 15 14 0 18 0 1 0 1 0 0 10 5 5 c 5 2 6 1 1 18 0 2 16 0 0 1 12 1 7 7 g 6 6 7 1 3 0 0 16 1 0 17 0 5 2 3 3 t 4 3 1 1 0 0 0 0 0 18 0 17 1 5 3 3

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_7nt_mkv2_m3 versus MA0832.1_rc (Tcf21_rc); m=1/31; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.771555; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift1 (FERD3L)
; oligos_7nt_mkv2_m3 versus MA1485.1 (FERD3L); m=2/31; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.715523; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA1621.1_shift1 (Rbpjl)
; oligos_7nt_mkv2_m3 versus MA1621.1 (Rbpjl); m=3/31; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.690695; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_7nt_mkv2_m3 versus MA1641.1_rc (MYF5_rc); m=4/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.685713; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; oligos_7nt_mkv2_m3 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.673863; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; oligos_7nt_mkv2_m3 versus MA1618.1_rc (Ptf1a_rc); m=6/31; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.651134; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_7nt_mkv2_m3 versus MA0499.2 (MYOD1); m=7/31; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.645483; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_7nt_mkv2_m3 versus MA0500.2_rc (MYOG_rc); m=8/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.62787; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; oligos_7nt_mkv2_m3 versus MA1467.1 (ATOH1(var.2)); m=9/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.605715; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_7nt_mkv2_m3 versus MA0521.1_rc (Tcf12_rc); m=10/31; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.595047; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_7nt_mkv2_m3 versus MA1620.1 (Ptf1a(var.3)); m=11/31; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.594909; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; oligos_7nt_mkv2_m3 versus MA0796.1_rc (TGIF1_rc); m=12/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.584125; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0

MA0745.2_shift2 (SNAI2)
; oligos_7nt_mkv2_m3 versus MA0745.2 (SNAI2); m=13/31; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.583453; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA0665.1_rc_shift3 (MSC_rc)
; oligos_7nt_mkv2_m3 versus MA0665.1_rc (MSC_rc); m=14/31; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.578467; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_7nt_mkv2_m3 versus MA1571.1_rc (TGIF2LX_rc); m=15/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.578074; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0797.1_rc_shift2 (TGIF2_rc)
; oligos_7nt_mkv2_m3 versus MA0797.1_rc (TGIF2_rc); m=16/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.57193; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA0667.1_shift3 (MYF6)
; oligos_7nt_mkv2_m3 versus MA0667.1 (MYF6); m=17/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.569766; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1572.1_shift2 (TGIF2LY)
; oligos_7nt_mkv2_m3 versus MA1572.1 (TGIF2LY); m=18/31; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.565829; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_7nt_mkv2_m3 versus MA1472.1 (BHLHA15(var.2)); m=19/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.562115; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; oligos_7nt_mkv2_m3 versus MA0091.1 (TAL1::TCF3); m=20/31; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.556736; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; oligos_7nt_mkv2_m3 versus MA0783.1_rc (PKNOX2_rc); m=21/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.549414; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_7nt_mkv2_m3 versus MA0691.1 (TFAP4); m=22/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.542342; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA1655.1_shift0 (ZNF341)
; oligos_7nt_mkv2_m3 versus MA1655.1 (ZNF341); m=23/31; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.537013; grGAACAGCcas---- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_7nt_mkv2_m3 versus MA0816.1 (Ascl2); m=24/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.534606; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_7nt_mkv2_m3 versus MA1635.1 (BHLHE22(var.2)); m=25/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.512363; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_shift3 (ASCL1)
; oligos_7nt_mkv2_m3 versus MA1100.2 (ASCL1); m=26/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.506232; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_7nt_mkv2_m3 versus MA0820.1 (FIGLA); m=27/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.494567; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; oligos_7nt_mkv2_m3 versus MA0048.2_rc (NHLH1_rc); m=28/31; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.458806; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1570.1_rc_shift3 (TFAP4(var.2)_rc)
; oligos_7nt_mkv2_m3 versus MA1570.1_rc (TFAP4(var.2)_rc); m=29/31; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.444912; ---amCAyrTGdt--- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; oligos_7nt_mkv2_m3 versus MA0774.1_rc (MEIS2_rc); m=30/31; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.444186; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

MA0775.1_rc_shift7 (MEIS3_rc)
; oligos_7nt_mkv2_m3 versus MA0775.1_rc (MEIS3_rc); m=31/31; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.426999; -------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

One-to-n matrix alignment; reference matrix: dyads_m36_shift0 ; 38 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m36_shift0 (dyads_m36dyads_m36)
; dyads_m36 (dyads_m36dyads_m36); m=0 (reference); ncol1=15; shift=0; ncol=15; rvkGACAGCTGctks ; Alignment reference a 22 19 16 12 62 0 67 2 1 1 0 16 16 14 14 c 9 18 12 4 1 67 0 1 66 0 0 43 15 10 17 g 25 21 22 50 4 0 0 63 0 0 67 5 13 25 23 t 11 9 17 1 0 0 0 1 0 66 0 3 23 18 13

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m36 versus MA0499.2_rc (MYOD1_rc); m=1/37; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.761931; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0832.1_shift1 (Tcf21)
; dyads_m36 versus MA0832.1 (Tcf21); m=2/37; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.741772; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m36 versus MA0500.2_rc (MYOG_rc); m=3/37; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.718523; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1641.1_shift2 (MYF5)
; dyads_m36 versus MA1641.1 (MYF5); m=4/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.715703; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m36 versus MA1619.1 (Ptf1a(var.2)); m=5/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.712079; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m36 versus MA1485.1_rc (FERD3L_rc); m=6/37; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.70902; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0521.1_shift3 (Tcf12)
; dyads_m36 versus MA0521.1 (Tcf12); m=7/37; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.698312; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; dyads_m36 versus MA1621.1_rc (Rbpjl_rc); m=8/37; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.686118; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA0745.2_rc_shift1 (SNAI2_rc)
; dyads_m36 versus MA0745.2_rc (SNAI2_rc); m=9/37; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.676449; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1618.1_shift2 (Ptf1a)
; dyads_m36 versus MA1618.1 (Ptf1a); m=10/37; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.638871; --dmaCAGATGttkh ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0

MA1123.2_rc_shift2 (TWIST1_rc)
; dyads_m36 versus MA1123.2_rc (TWIST1_rc); m=11/37; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.621912; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA1631.1_shift2 (ASCL1(var.2))
; dyads_m36 versus MA1631.1 (ASCL1(var.2)); m=12/37; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.617963; --cdgCACCTGCysc ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0

MA0830.2_rc_shift1 (TCF4_rc)
; dyads_m36 versus MA0830.2_rc (TCF4_rc); m=13/37; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.612456; -ssggCAGGTGccg- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0

MA1109.1_shift2 (NEUROD1)
; dyads_m36 versus MA1109.1 (NEUROD1); m=14/37; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.609308; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA1620.1_shift2 (Ptf1a(var.3))
; dyads_m36 versus MA1620.1 (Ptf1a(var.3)); m=15/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.598299; --rmaCACCTGtky- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m36 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.596312; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m36 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592227; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1571.1_shift2 (TGIF2LX)
; dyads_m36 versus MA1571.1 (TGIF2LX); m=18/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.588821; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0

MA1593.1_shift2 (ZNF317)
; dyads_m36 versus MA1593.1 (ZNF317); m=19/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.588668; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m36 versus MA1635.1 (BHLHE22(var.2)); m=20/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.588485; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0796.1_rc_shift2 (TGIF1_rc)
; dyads_m36 versus MA0796.1_rc (TGIF1_rc); m=21/37; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.586791; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0

MA0816.1_shift3 (Ascl2)
; dyads_m36 versus MA0816.1 (Ascl2); m=22/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.585183; ---arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m36 versus MA1100.2_rc (ASCL1_rc); m=23/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.583227; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; dyads_m36 versus MA1572.1_rc (TGIF2LY_rc); m=24/37; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.578743; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift2 (TGIF2)
; dyads_m36 versus MA0797.1 (TGIF2); m=25/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.576121; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA0691.1_shift3 (TFAP4)
; dyads_m36 versus MA0691.1 (TFAP4); m=26/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.555455; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_shift3 (MSC)
; dyads_m36 versus MA0665.1 (MSC); m=27/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.551594; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; dyads_m36 versus MA0048.2_rc (NHLH1_rc); m=28/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.537108; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA1648.1_shift3 (TCF12(var.2))
; dyads_m36 versus MA1648.1 (TCF12(var.2)); m=29/37; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.528622; ---ssCACCTGCys- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0

MA0522.3_shift3 (TCF3)
; dyads_m36 versus MA0522.3 (TCF3); m=30/37; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.526188; ---svCACCTGCss- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m36 versus MA0667.1_rc (MYF6_rc); m=31/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.522942; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; dyads_m36 versus MA0820.1_rc (FIGLA_rc); m=32/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.492219; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA1559.1_shift3 (SNAI3)
; dyads_m36 versus MA1559.1 (SNAI3); m=33/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.485784; ---arCAGGTGya-- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0

MA0100.3_rc_shift3 (MYB_rc)
; dyads_m36 versus MA0100.3_rc (MYB_rc); m=34/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.470745; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA1638.1_rc_shift3 (HAND2_rc)
; dyads_m36 versus MA1638.1_rc (HAND2_rc); m=35/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.467441; ---rvCATCTGkt-- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0

MA0774.1_shift1 (MEIS2)
; dyads_m36 versus MA0774.1 (MEIS2); m=36/37; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.434323; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; dyads_m36 versus MA0775.1 (MEIS3); m=37/37; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.413878; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m33_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m33_shift0 (dyads_m33dyads_m33)
; dyads_m33 (dyads_m33dyads_m33); m=0 (reference); ncol1=10; shift=0; ncol=12; ACACTGTAGr-- ; Alignment reference a 54 1 76 0 0 0 0 76 5 21 0 0 c 17 68 0 76 0 0 0 0 3 6 0 0 g 0 6 0 0 1 76 0 0 66 48 0 0 t 5 1 0 0 75 0 76 0 2 1 0 0

MA1580.1_rc_shift0 (ZBTB32_rc)
; dyads_m33 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.752354; wtACTGTACa-- ; cor=; Ncor= a 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 0 0 c 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 0 0 g 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 0 0 t 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0 0 0

MA1542.1_rc_shift1 (OSR1_rc)
; dyads_m33 versus MA1542.1_rc (OSR1_rc); m=2/3; ncol2=10; w=9; offset=1; strand=R; shift=1; score=0.573803; -mACrGTAGCr- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0

MA1585.1_shift2 (ZKSCAN1)
; dyads_m33 versus MA1585.1 (ZKSCAN1); m=3/3; ncol2=10; w=8; offset=2; strand=D; shift=2; score=0.472673; --AyAGTAGGtg ; cor=; Ncor= a 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 c 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 g 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 t 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift5 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift5 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4); m=0 (reference); ncol1=10; shift=5; ncol=16; -----dsAGGCAGrg- ; Alignment reference a 0 0 0 0 0 17 7 59 0 0 0 59 0 18 13 0 c 0 0 0 0 0 10 15 0 0 0 59 0 0 12 6 0 g 0 0 0 0 0 16 33 0 59 59 0 0 59 23 32 0 t 0 0 0 0 0 16 4 0 0 0 0 0 0 6 8 0

MA0764.2_shift5 (ETV4)
; oligos_6nt_mkv2_m4 versus MA0764.2 (ETV4); m=1/7; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.748447; -----rcAGGAAGyr- ; cor=; Ncor= a 0 0 0 0 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 c 0 0 0 0 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 g 0 0 0 0 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 t 0 0 0 0 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0

MA1596.1_rc_shift1 (ZNF460_rc)
; oligos_6nt_mkv2_m4 versus MA1596.1_rc (ZNF460_rc); m=2/7; ncol2=16; w=10; offset=-4; strand=R; shift=1; score=0.467675; -CyyGGGAGGCkGAGG ; cor=; Ncor= a 0 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 c 0 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 g 0 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 t 0 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0

MA1631.1_rc_shift6 (ASCL1(var.2)_rc)
; oligos_6nt_mkv2_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/7; ncol2=13; w=9; offset=1; strand=R; shift=6; score=0.456198; ------gsrGCAGGTG ; cor=; Ncor= a 0 0 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 c 0 0 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 g 0 0 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 t 0 0 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0

MA0003.4_rc_shift0 (TFAP2A_rc)
; oligos_6nt_mkv2_m4 versus MA0003.4_rc (TFAP2A_rc); m=4/7; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.454783; tksCCTGAGGcarb-- ; cor=; Ncor= a 3008.0 3914.0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 6701.0 5211.0 3469.0 0 0 c 3841.0 3051.0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 3791.0 3374.0 4072.0 0 0 g 3915.0 4783.0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 2634.0 4620.0 4092.0 0 0 t 5204.0 4220.0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 2842.0 2763.0 4335.0 0 0

MA0812.1_shift1 (TFAP2B(var.2))
; oligos_6nt_mkv2_m4 versus MA0812.1 (TFAP2B(var.2)); m=5/7; ncol2=11; w=7; offset=-4; strand=D; shift=1; score=0.43829; -mGCCysAGGCd---- ; cor=; Ncor= a 0 1784.0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 1822.0 0 0 0 0 c 0 1412.0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 371.0 0 0 0 0 g 0 232.0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 1149.0 0 0 0 0 t 0 1121.0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 1207.0 0 0 0 0

MA0814.2_shift0 (TFAP2C(var.2))
; oligos_6nt_mkv2_m4 versus MA0814.2 (TFAP2C(var.2)); m=6/7; ncol2=14; w=9; offset=-5; strand=D; shift=0; score=0.424619; bggCCTGAGGCgvs-- ; cor=; Ncor= a 11314.0 13628.0 3782.0 736.0 482.0 1367.0 1323.0 51058.0 874.0 714.0 4313.0 10186.0 16182.0 12086.0 0 0 c 15858.0 12565.0 14686.0 57108.0 57617.0 5539.0 3036.0 4733.0 1486.0 1575.0 42758.0 12553.0 15252.0 16468.0 0 0 g 17038.0 20129.0 37729.0 2273.0 2060.0 4910.0 55222.0 3944.0 57995.0 57916.0 9867.0 27373.0 18680.0 17367.0 0 0 t 16609.0 14497.0 4622.0 702.0 660.0 49003.0 1238.0 1084.0 464.0 614.0 3881.0 10707.0 10705.0 14898.0 0 0

MA1569.1_rc_shift1 (TFAP2E_rc)
; oligos_6nt_mkv2_m4 versus MA1569.1_rc (TFAP2E_rc); m=7/7; ncol2=11; w=7; offset=-4; strand=R; shift=1; score=0.401558; -ysCCysrGGsr---- ; cor=; Ncor= a 0 2729.0 0.0 0.0 0.0 0.0 1316.0 7858.0 0.0 0.0 0.0 4957.0 0 0 0 0 c 0 5310.0 6818.0 14449.0 14449.0 4463.0 5766.0 2053.0 0.0 0.0 14449.0 1434.0 0 0 0 0 g 0 1506.0 14449.0 0.0 0.0 2419.0 5928.0 4768.0 14449.0 14449.0 6924.0 5504.0 0 0 0 0 t 0 4904.0 0.0 0.0 0.0 7716.0 1440.0 0.0 0.0 0.0 0.0 2554.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m9_shift4 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m9_shift4 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9)
; oligos_7nt_mkv2_m9 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9); m=0 (reference); ncol1=11; shift=4; ncol=17; ----wtTAAATAAag-- ; Alignment reference a 0 0 0 0 4 3 0 12 12 13 1 13 12 6 3 0 0 c 0 0 0 0 3 3 0 0 0 0 0 0 1 3 1 0 0 g 0 0 0 0 1 3 0 1 0 0 0 0 0 2 6 0 0 t 0 0 0 0 5 4 13 0 1 0 12 0 0 2 3 0 0

MA0621.1_rc_shift4 (mix-a_rc)
; oligos_7nt_mkv2_m9 versus MA0621.1_rc (mix-a_rc); m=1/33; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.745235; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0

MA1463.1_shift4 (ARGFX)
; oligos_7nt_mkv2_m9 versus MA1463.1 (ARGFX); m=2/33; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.654332; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0

MA0703.2_rc_shift5 (LMX1B_rc)
; oligos_7nt_mkv2_m9 versus MA0703.2_rc (LMX1B_rc); m=3/33; ncol2=11; w=10; offset=1; strand=R; shift=5; score=0.640455; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0

MA0047.3_shift3 (FOXA2)
; oligos_7nt_mkv2_m9 versus MA0047.3 (FOXA2); m=4/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.618451; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0 0 0

MA0846.1_shift2 (FOXC2)
; oligos_7nt_mkv2_m9 versus MA0846.1 (FOXC2); m=5/33; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.61791; --wAwrTAAAYAww--- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0

MA1606.1_shift3 (Foxf1)
; oligos_7nt_mkv2_m9 versus MA1606.1 (Foxf1); m=6/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.616207; ---awrTAAACAaa--- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0

MA1113.2_shift2 (PBX2)
; oligos_7nt_mkv2_m9 versus MA1113.2 (PBX2); m=7/33; ncol2=13; w=11; offset=-2; strand=D; shift=2; score=0.612348; --rhcATAAATCAtw-- ; cor=; Ncor= a 0 0 8363.0 8307.0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 6993.0 7897.0 0 0 c 0 0 5863.0 8859.0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 7057.0 7086.0 0 0 g 0 0 9625.0 3047.0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 3952.0 5574.0 0 0 t 0 0 5745.0 9383.0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 11594.0 9039.0 0 0

MA0481.3_shift3 (FOXP1)
; oligos_7nt_mkv2_m9 versus MA0481.3 (FOXP1); m=8/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.607765; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0 0 0

MA1683.1_shift3 (FOXA3)
; oligos_7nt_mkv2_m9 versus MA1683.1 (FOXA3); m=9/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.606368; ---rwGTAAACAww--- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0 0 0

MA1103.2_shift3 (FOXK2)
; oligos_7nt_mkv2_m9 versus MA1103.2 (FOXK2); m=10/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600326; ---awGTAAACAar--- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0 0 0

MA0593.1_shift3 (FOXP2)
; oligos_7nt_mkv2_m9 versus MA0593.1 (FOXP2); m=11/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.590957; ---awGTAAACAra--- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0

MA0852.2_shift2 (FOXK1)
; oligos_7nt_mkv2_m9 versus MA0852.2 (FOXK1); m=12/33; ncol2=14; w=11; offset=-2; strand=D; shift=2; score=0.562841; --wrkGTAAACAagsv- ; cor=; Ncor= a 0 0 329.0 416.0 247.0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 512.0 185.0 242.0 283.0 0 c 0 0 184.0 175.0 142.0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 199.0 201.0 269.0 288.0 0 g 0 0 258.0 270.0 272.0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 204.0 568.0 362.0 270.0 0 t 0 0 285.0 195.0 395.0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 141.0 102.0 183.0 215.0 0

MA0032.2_shift2 (FOXC1)
; oligos_7nt_mkv2_m9 versus MA0032.2 (FOXC1); m=13/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.558629; --wAwRTMAAyAw---- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0

MA0845.1_shift2 (FOXB1)
; oligos_7nt_mkv2_m9 versus MA0845.1 (FOXB1); m=14/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.555649; --wAwGTMAAyAt---- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0 0 0

MA0702.2_rc_shift5 (LMX1A_rc)
; oligos_7nt_mkv2_m9 versus MA0702.2_rc (LMX1A_rc); m=15/33; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.553491; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0

MA0614.1_shift5 (Foxj2)
; oligos_7nt_mkv2_m9 versus MA0614.1 (Foxj2); m=16/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.549045; -----rTAAACAa---- ; cor=; Ncor= a 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 c 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 g 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 t 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0

MA1489.1_shift5 (FOXN3)
; oligos_7nt_mkv2_m9 versus MA1489.1 (FOXN3); m=17/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.548608; -----GTAAACAA---- ; cor=; Ncor= a 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 c 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 g 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 t 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0

MA1487.1_shift3 (FOXE1)
; oligos_7nt_mkv2_m9 versus MA1487.1 (FOXE1); m=18/33; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.538914; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0

MA0613.1_shift5 (FOXG1)
; oligos_7nt_mkv2_m9 versus MA0613.1 (FOXG1); m=19/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.537778; -----rTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 g 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0

MA0033.2_shift5 (FOXL1)
; oligos_7nt_mkv2_m9 versus MA0033.2 (FOXL1); m=20/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score= 0.5237; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0

MA0031.1_shift5 (FOXD1)
; oligos_7nt_mkv2_m9 versus MA0031.1 (FOXD1); m=21/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.52045; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 g 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 t 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0

MA0851.1_shift0 (Foxj3)
; oligos_7nt_mkv2_m9 versus MA0851.1 (Foxj3); m=22/33; ncol2=17; w=11; offset=-4; strand=D; shift=0; score=0.519241; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0

MA0157.2_shift5 (FOXO3)
; oligos_7nt_mkv2_m9 versus MA0157.2 (FOXO3); m=23/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.519136; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 g 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 t 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_7nt_mkv2_m9 versus MA0848.1 (FOXO4); m=24/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.493879; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0

MA0042.2_shift5 (FOXI1)
; oligos_7nt_mkv2_m9 versus MA0042.2 (FOXI1); m=25/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.491537; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0 0

MA0030.1_shift0 (FOXF2)
; oligos_7nt_mkv2_m9 versus MA0030.1 (FOXF2); m=26/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.491101; bmaasRTAAACAaw--- ; cor=; Ncor= a 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 c 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 g 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 t 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0

MA0850.1_shift5 (FOXP3)
; oligos_7nt_mkv2_m9 versus MA0850.1 (FOXP3); m=27/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.484369; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0

MA0847.2_shift0 (FOXD2)
; oligos_7nt_mkv2_m9 versus MA0847.2 (FOXD2); m=28/33; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.475636; sywAwRTAAAYAw---- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0 0 0

MA0849.1_shift5 (FOXO6)
; oligos_7nt_mkv2_m9 versus MA0849.1 (FOXO6); m=29/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.473445; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0 0

MA1607.1_shift0 (Foxl2)
; oligos_7nt_mkv2_m9 versus MA1607.1 (Foxl2); m=30/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.469831; rwwaTGTAAACAwr--- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0 0 0

MA0853.1_rc_shift0 (Alx4_rc)
; oligos_7nt_mkv2_m9 versus MA0853.1_rc (Alx4_rc); m=31/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.466761; gstdayTAATTArygcg ; cor=; Ncor= a 24.0 23.0 22.0 30.0 42.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 16.0 21.0 10.0 11.0 c 21.0 25.0 19.0 13.0 18.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 29.0 16.0 56.0 15.0 g 43.0 29.0 23.0 28.0 23.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 15.0 44.0 24.0 59.0 t 12.0 23.0 36.0 29.0 17.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 40.0 19.0 10.0 16.0

MA0854.1_rc_shift0 (Alx1_rc)
; oligos_7nt_mkv2_m9 versus MA0854.1_rc (Alx1_rc); m=32/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.456205; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0

MA0151.1_shift4 (Arid3a)
; oligos_7nt_mkv2_m9 versus MA0151.1 (Arid3a); m=33/33; ncol2=6; w=6; offset=0; strand=D; shift=4; score=0.402164; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m8_shift6 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m8_shift6 (oligos_6nt_mkv2_m8oligos_6nt_mkv2_m8)
; oligos_6nt_mkv2_m8 (oligos_6nt_mkv2_m8oligos_6nt_mkv2_m8); m=0 (reference); ncol1=10; shift=6; ncol=16; ------rtGAGAAAha ; Alignment reference a 0 0 0 0 0 0 101 13 0 154 0 154 154 154 43 85 c 0 0 0 0 0 0 3 32 0 0 0 0 0 0 52 30 g 0 0 0 0 0 0 44 11 154 0 154 0 0 0 5 34 t 0 0 0 0 0 0 6 98 0 0 0 0 0 0 54 5

MA0508.3_rc_shift6 (PRDM1_rc)
; oligos_6nt_mkv2_m8 versus MA0508.3_rc (PRDM1_rc); m=1/3; ncol2=11; w=10; offset=0; strand=R; shift=6; score=0.739412; ------raGAGAAAGw ; cor=; Ncor= a 0 0 0 0 0 0 19978.0 27294.0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 17272.0 c 0 0 0 0 0 0 7861.0 4098.0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 8768.0 g 0 0 0 0 0 0 17518.0 13567.0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 12288.0 t 0 0 0 0 0 0 10124.0 10522.0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 17153.0

MA1647.1_rc_shift8 (PRDM4_rc)
; oligos_6nt_mkv2_m8 versus MA1647.1_rc (PRDM4_rc); m=2/3; ncol2=11; w=8; offset=2; strand=R; shift=8; score=0.468279; --------twGAAACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 c 0 0 0 0 0 0 0 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 g 0 0 0 0 0 0 0 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 t 0 0 0 0 0 0 0 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0

MA0520.1_shift0 (Stat6)
; oligos_6nt_mkv2_m8 versus MA0520.1 (Stat6); m=3/3; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.415673; swyTTCywsaGAAmy- ; cor=; Ncor= a 257.0 665.0 152.0 0.0 13.0 122.0 70.0 664.0 328.0 1153.0 26.0 1852.0 1849.0 621.0 345.0 0 c 663.0 328.0 566.0 0.0 0.0 1680.0 1204.0 21.0 534.0 3.0 0.0 0.0 0.0 540.0 490.0 0 g 482.0 372.0 436.0 0.0 0.0 0.0 0.0 219.0 898.0 416.0 1796.0 0.0 3.0 398.0 235.0 0 t 450.0 487.0 698.0 1852.0 1839.0 50.0 578.0 948.0 92.0 280.0 30.0 0.0 0.0 293.0 782.0 0

One-to-n matrix alignment; reference matrix: dyads_m19_shift0 ; 35 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m19_shift0 (dyads_m19dyads_m19)
; dyads_m19 (dyads_m19dyads_m19); m=0 (reference); ncol1=15; shift=0; ncol=15; rvdGACAGCTGvyks ; Alignment reference a 16 14 17 2 48 0 50 0 1 1 0 16 9 10 9 c 8 18 3 0 0 49 0 0 49 0 0 16 13 8 15 g 16 14 14 47 2 0 0 48 0 0 50 14 10 17 17 t 10 4 16 1 0 1 0 2 0 49 0 4 18 15 9

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m19 versus MA0499.2_rc (MYOD1_rc); m=1/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.734892; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0832.1_shift1 (Tcf21)
; dyads_m19 versus MA0832.1 (Tcf21); m=2/34; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.719755; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m19 versus MA1485.1_rc (FERD3L_rc); m=3/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.705903; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1641.1_shift2 (MYF5)
; dyads_m19 versus MA1641.1 (MYF5); m=4/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.705693; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m19 versus MA1619.1 (Ptf1a(var.2)); m=5/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.699264; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m19 versus MA0500.2_rc (MYOG_rc); m=6/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.684463; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; dyads_m19 versus MA1621.1_rc (Rbpjl_rc); m=7/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.681461; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0

MA0521.1_shift3 (Tcf12)
; dyads_m19 versus MA0521.1 (Tcf12); m=8/34; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.680499; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; dyads_m19 versus MA0745.2_rc (SNAI2_rc); m=9/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.648845; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1123.2_rc_shift2 (TWIST1_rc)
; dyads_m19 versus MA1123.2_rc (TWIST1_rc); m=10/34; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.635483; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0

MA1618.1_shift2 (Ptf1a)
; dyads_m19 versus MA1618.1 (Ptf1a); m=11/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.635463; --dmaCAGATGttkh ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0

MA1109.1_shift2 (NEUROD1)
; dyads_m19 versus MA1109.1 (NEUROD1); m=12/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.634618; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0

MA1571.1_shift2 (TGIF2LX)
; dyads_m19 versus MA1571.1 (TGIF2LX); m=13/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.619052; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0

MA0796.1_shift2 (TGIF1)
; dyads_m19 versus MA0796.1 (TGIF1); m=14/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.616631; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; dyads_m19 versus MA1572.1_rc (TGIF2LY_rc); m=15/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.610971; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA1642.1_shift1 (NEUROG2(var.2))
; dyads_m19 versus MA1642.1 (NEUROG2(var.2)); m=16/34; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.609363; -rrraCAGATGGyv- ; cor=; Ncor= a 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0

MA0797.1_shift2 (TGIF2)
; dyads_m19 versus MA0797.1 (TGIF2); m=17/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.606966; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m19 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.604325; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1593.1_shift2 (ZNF317)
; dyads_m19 versus MA1593.1 (ZNF317); m=19/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.602001; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA1620.1_shift2 (Ptf1a(var.3))
; dyads_m19 versus MA1620.1 (Ptf1a(var.3)); m=20/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.586245; --rmaCACCTGtky- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m19 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=21/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.581992; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m19 versus MA1635.1 (BHLHE22(var.2)); m=22/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.571426; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0783.1_shift2 (PKNOX2)
; dyads_m19 versus MA0783.1 (PKNOX2); m=23/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.570565; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m19 versus MA1100.2_rc (ASCL1_rc); m=24/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.553592; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; dyads_m19 versus MA0816.1_rc (Ascl2_rc); m=25/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.546692; ---rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m19 versus MA0691.1 (TFAP4); m=26/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.545617; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_shift3 (MSC)
; dyads_m19 versus MA0665.1 (MSC); m=27/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.540297; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m19 versus MA0667.1_rc (MYF6_rc); m=28/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.516475; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0048.2_rc_shift3 (NHLH1_rc)
; dyads_m19 versus MA0048.2_rc (NHLH1_rc); m=29/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.496106; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; dyads_m19 versus MA0820.1_rc (FIGLA_rc); m=30/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.490597; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA0100.3_rc_shift3 (MYB_rc)
; dyads_m19 versus MA0100.3_rc (MYB_rc); m=31/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.467977; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA0774.1_shift1 (MEIS2)
; dyads_m19 versus MA0774.1 (MEIS2); m=32/34; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.445275; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift1 (MEIS3)
; dyads_m19 versus MA0775.1 (MEIS3); m=33/34; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.426208; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0498.2_shift1 (MEIS1)
; dyads_m19 versus MA0498.2 (MEIS1); m=34/34; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.401067; -wTGACAg------- ; cor=; Ncor= a 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m22_shift4 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m22_shift4 (oligos_8nt_mkv2_m22oligos_8nt_mkv2_m22)
; oligos_8nt_mkv2_m22 (oligos_8nt_mkv2_m22oligos_8nt_mkv2_m22); m=0 (reference); ncol1=15; shift=4; ncol=19; ----rvtGACAGCTGmhkg ; Alignment reference a 0 0 0 0 11 7 4 0 28 0 28 1 0 0 0 10 9 5 4 c 0 0 0 0 2 11 3 1 0 28 0 0 28 0 0 17 9 4 5 g 0 0 0 0 10 9 4 27 0 0 0 27 0 0 28 0 3 9 13 t 0 0 0 0 5 1 17 0 0 0 0 0 0 28 0 1 7 10 6

MA0499.2_rc_shift5 (MYOD1_rc)
; oligos_8nt_mkv2_m22 versus MA0499.2_rc (MYOD1_rc); m=1/28; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.733536; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1485.1_rc_shift5 (FERD3L_rc)
; oligos_8nt_mkv2_m22 versus MA1485.1_rc (FERD3L_rc); m=2/28; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.679789; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1641.1_shift6 (MYF5)
; oligos_8nt_mkv2_m22 versus MA1641.1 (MYF5); m=3/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.676355; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA0832.1_shift5 (Tcf21)
; oligos_8nt_mkv2_m22 versus MA0832.1 (Tcf21); m=4/28; ncol2=14; w=14; offset=1; strand=D; shift=5; score=0.676329; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1619.1_shift6 (Ptf1a(var.2))
; oligos_8nt_mkv2_m22 versus MA1619.1 (Ptf1a(var.2)); m=5/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.670142; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; oligos_8nt_mkv2_m22 versus MA0500.2_rc (MYOG_rc); m=6/28; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.669923; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0521.1_shift7 (Tcf12)
; oligos_8nt_mkv2_m22 versus MA0521.1 (Tcf12); m=7/28; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.668031; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0745.2_rc_shift5 (SNAI2_rc)
; oligos_8nt_mkv2_m22 versus MA0745.2_rc (SNAI2_rc); m=8/28; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.653751; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; oligos_8nt_mkv2_m22 versus MA1571.1_rc (TGIF2LX_rc); m=9/28; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.631605; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0796.1_shift6 (TGIF1)
; oligos_8nt_mkv2_m22 versus MA0796.1 (TGIF1); m=10/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.630762; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; oligos_8nt_mkv2_m22 versus MA1572.1_rc (TGIF2LY_rc); m=11/28; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.623813; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift6 (TGIF2)
; oligos_8nt_mkv2_m22 versus MA0797.1 (TGIF2); m=12/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.621895; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1593.1_shift6 (ZNF317)
; oligos_8nt_mkv2_m22 versus MA1593.1 (ZNF317); m=13/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.597276; ------wrACAGCAGAyw- ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA0783.1_shift6 (PKNOX2)
; oligos_8nt_mkv2_m22 versus MA0783.1 (PKNOX2); m=14/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.585608; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m22 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.577977; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1620.1_shift6 (Ptf1a(var.3))
; oligos_8nt_mkv2_m22 versus MA1620.1 (Ptf1a(var.3)); m=16/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.561855; ------rmaCACCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0

MA1635.1_shift7 (BHLHE22(var.2))
; oligos_8nt_mkv2_m22 versus MA1635.1 (BHLHE22(var.2)); m=17/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.560173; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m22 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=18/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.557985; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; oligos_8nt_mkv2_m22 versus MA1100.2_rc (ASCL1_rc); m=19/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.554756; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0816.1_shift7 (Ascl2)
; oligos_8nt_mkv2_m22 versus MA0816.1 (Ascl2); m=20/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.543813; -------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0691.1_shift7 (TFAP4)
; oligos_8nt_mkv2_m22 versus MA0691.1 (TFAP4); m=21/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.521335; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_shift7 (MSC)
; oligos_8nt_mkv2_m22 versus MA0665.1 (MSC); m=22/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.515097; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0048.2_shift7 (NHLH1)
; oligos_8nt_mkv2_m22 versus MA0048.2 (NHLH1); m=23/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.495907; -------cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; oligos_8nt_mkv2_m22 versus MA0667.1_rc (MYF6_rc); m=24/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.490751; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0774.1_shift5 (MEIS2)
; oligos_8nt_mkv2_m22 versus MA0774.1 (MEIS2); m=25/28; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.467957; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; oligos_8nt_mkv2_m22 versus MA0775.1 (MEIS3); m=26/28; ncol2=8; w=8; offset=1; strand=D; shift=5; score= 0.4493; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; oligos_8nt_mkv2_m22 versus MA0782.2 (PKNOX1); m=27/28; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.431674; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; oligos_8nt_mkv2_m22 versus MA0498.2 (MEIS1); m=28/28; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.423086; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m17_shift4 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m17_shift4 (oligos_8nt_mkv2_m17oligos_8nt_mkv2_m17)
; oligos_8nt_mkv2_m17 (oligos_8nt_mkv2_m17oligos_8nt_mkv2_m17); m=0 (reference); ncol1=15; shift=4; ncol=19; ----rstGACAGCTGmhkg ; Alignment reference a 0 0 0 0 11 6 4 0 27 0 27 0 0 0 0 10 9 4 4 c 0 0 0 0 2 11 2 1 0 27 0 0 27 0 0 16 8 4 5 g 0 0 0 0 10 9 4 26 0 0 0 27 0 0 27 0 3 9 12 t 0 0 0 0 4 1 17 0 0 0 0 0 0 27 0 1 7 10 6

MA0499.2_rc_shift5 (MYOD1_rc)
; oligos_8nt_mkv2_m17 versus MA0499.2_rc (MYOD1_rc); m=1/27; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.732681; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1485.1_rc_shift5 (FERD3L_rc)
; oligos_8nt_mkv2_m17 versus MA1485.1_rc (FERD3L_rc); m=2/27; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.682478; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA0832.1_shift5 (Tcf21)
; oligos_8nt_mkv2_m17 versus MA0832.1 (Tcf21); m=3/27; ncol2=14; w=14; offset=1; strand=D; shift=5; score=0.676548; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA1641.1_shift6 (MYF5)
; oligos_8nt_mkv2_m17 versus MA1641.1 (MYF5); m=4/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.676282; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift6 (Ptf1a(var.2))
; oligos_8nt_mkv2_m17 versus MA1619.1 (Ptf1a(var.2)); m=5/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.670336; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; oligos_8nt_mkv2_m17 versus MA0500.2_rc (MYOG_rc); m=6/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.66948; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0521.1_shift7 (Tcf12)
; oligos_8nt_mkv2_m17 versus MA0521.1 (Tcf12); m=7/27; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.669182; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0745.2_rc_shift5 (SNAI2_rc)
; oligos_8nt_mkv2_m17 versus MA0745.2_rc (SNAI2_rc); m=8/27; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.652737; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA0796.1_shift6 (TGIF1)
; oligos_8nt_mkv2_m17 versus MA0796.1 (TGIF1); m=9/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.62636; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; oligos_8nt_mkv2_m17 versus MA1571.1_rc (TGIF2LX_rc); m=10/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.626344; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; oligos_8nt_mkv2_m17 versus MA1572.1_rc (TGIF2LY_rc); m=11/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.618351; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0797.1_shift6 (TGIF2)
; oligos_8nt_mkv2_m17 versus MA0797.1 (TGIF2); m=12/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.616961; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA1593.1_shift6 (ZNF317)
; oligos_8nt_mkv2_m17 versus MA1593.1 (ZNF317); m=13/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.599527; ------wrACAGCAGAyw- ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA0783.1_shift6 (PKNOX2)
; oligos_8nt_mkv2_m17 versus MA0783.1 (PKNOX2); m=14/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.581481; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.57887; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; oligos_8nt_mkv2_m17 versus MA1635.1 (BHLHE22(var.2)); m=16/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.561529; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m17 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.558776; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; oligos_8nt_mkv2_m17 versus MA1100.2_rc (ASCL1_rc); m=18/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.554161; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0816.1_shift7 (Ascl2)
; oligos_8nt_mkv2_m17 versus MA0816.1 (Ascl2); m=19/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.543852; -------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0691.1_shift7 (TFAP4)
; oligos_8nt_mkv2_m17 versus MA0691.1 (TFAP4); m=20/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.524183; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0665.1_shift7 (MSC)
; oligos_8nt_mkv2_m17 versus MA0665.1 (MSC); m=21/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.516721; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0048.2_shift7 (NHLH1)
; oligos_8nt_mkv2_m17 versus MA0048.2 (NHLH1); m=22/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.496396; -------cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; oligos_8nt_mkv2_m17 versus MA0667.1_rc (MYF6_rc); m=23/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.491714; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0774.1_shift5 (MEIS2)
; oligos_8nt_mkv2_m17 versus MA0774.1 (MEIS2); m=24/27; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.468766; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; oligos_8nt_mkv2_m17 versus MA0775.1 (MEIS3); m=25/27; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.448414; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; oligos_8nt_mkv2_m17 versus MA0782.2 (PKNOX1); m=26/27; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.434985; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; oligos_8nt_mkv2_m17 versus MA0498.2 (MEIS1); m=27/27; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.420312; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m14_shift5 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m14_shift5 (oligos_8nt_mkv2_m14oligos_8nt_mkv2_m14)
; oligos_8nt_mkv2_m14 (oligos_8nt_mkv2_m14oligos_8nt_mkv2_m14); m=0 (reference); ncol1=12; shift=5; ncol=17; -----AwCATGGAAAAT ; Alignment reference a 0 0 0 0 0 68 46 1 74 0 1 0 81 83 73 78 3 c 0 0 0 0 0 1 3 79 0 11 2 0 0 0 0 3 0 g 0 0 0 0 0 14 0 0 9 0 80 83 1 0 0 0 1 t 0 0 0 0 0 0 34 3 0 72 0 0 1 0 10 2 79

MA0606.1_rc_shift7 (NFAT5_rc)
; oligos_8nt_mkv2_m14 versus MA0606.1_rc (NFAT5_rc); m=1/6; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.731885; -------wrTGGAAAat ; cor=; Ncor= a 0 0 0 0 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 c 0 0 0 0 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 g 0 0 0 0 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 t 0 0 0 0 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0

MA1525.1_shift7 (NFATC4)
; oligos_8nt_mkv2_m14 versus MA1525.1 (NFATC4); m=2/6; ncol2=10; w=10; offset=2; strand=D; shift=7; score=0.714388; -------aryGGAAAmw ; cor=; Ncor= a 0 0 0 0 0 0 0 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 c 0 0 0 0 0 0 0 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 g 0 0 0 0 0 0 0 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 t 0 0 0 0 0 0 0 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0

MA0625.1_rc_shift7 (NFATC3_rc)
; oligos_8nt_mkv2_m14 versus MA0625.1_rc (NFATC3_rc); m=3/6; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.699815; -------aryGGAAAaw ; cor=; Ncor= a 0 0 0 0 0 0 0 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 c 0 0 0 0 0 0 0 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 g 0 0 0 0 0 0 0 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 t 0 0 0 0 0 0 0 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0

MA0624.1_rc_shift7 (NFATC1_rc)
; oligos_8nt_mkv2_m14 versus MA0624.1_rc (NFATC1_rc); m=4/6; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.680928; -------aryGGAAaaw ; cor=; Ncor= a 0 0 0 0 0 0 0 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 c 0 0 0 0 0 0 0 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 g 0 0 0 0 0 0 0 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 t 0 0 0 0 0 0 0 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0

MA0152.1_rc_shift9 (NFATC2_rc)
; oligos_8nt_mkv2_m14 versus MA0152.1_rc (NFATC2_rc); m=5/6; ncol2=7; w=7; offset=4; strand=R; shift=9; score=0.574822; ---------TGGAAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 g 0 0 0 0 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 t 0 0 0 0 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0

MA1616.1_shift0 (Prdm15)
; oligos_8nt_mkv2_m14 versus MA1616.1 (Prdm15); m=6/6; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.420579; rrgAAAACCTGGAry-- ; cor=; Ncor= a 638.0 624.0 252.0 2011.0 2121.0 1942.0 1801.0 67.0 222.0 220.0 19.0 64.0 1531.0 687.0 540.0 0 0 c 486.0 329.0 325.0 60.0 34.0 47.0 138.0 1941.0 1886.0 361.0 7.0 23.0 314.0 438.0 635.0 0 0 g 560.0 920.0 1333.0 135.0 58.0 200.0 152.0 101.0 107.0 28.0 2199.0 2126.0 220.0 748.0 460.0 0 0 t 553.0 364.0 327.0 31.0 24.0 48.0 146.0 128.0 22.0 1628.0 12.0 24.0 172.0 364.0 602.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m7_shift5 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m7_shift5 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7)
; oligos_6nt_mkv2_m7 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7); m=0 (reference); ncol1=10; shift=5; ncol=16; -----hgCCTCCCwa- ; Alignment reference a 0 0 0 0 0 10 6 0 0 0 0 0 0 17 16 0 c 0 0 0 0 0 10 7 40 40 0 40 40 40 6 9 0 g 0 0 0 0 0 5 19 0 0 0 0 0 0 5 8 0 t 0 0 0 0 0 15 8 0 0 40 0 0 0 12 7 0

MA0528.2_rc_shift4 (ZNF263_rc)
; oligos_6nt_mkv2_m7 versus MA0528.2_rc (ZNF263_rc); m=1/9; ncol2=12; w=10; offset=-1; strand=R; shift=4; score=0.727169; ----csTCCTCCCcsc ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0

MA1653.1_shift3 (ZNF148)
; oligos_6nt_mkv2_m7 versus MA1653.1 (ZNF148); m=2/9; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.64305; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA0599.1_shift4 (KLF5)
; oligos_6nt_mkv2_m7 versus MA0599.1 (KLF5); m=3/9; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.604541; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1522.1_shift3 (MAZ)
; oligos_6nt_mkv2_m7 versus MA1522.1 (MAZ); m=4/9; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.597204; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA1627.1_shift5 (Wt1)
; oligos_6nt_mkv2_m7 versus MA1627.1 (Wt1); m=5/9; ncol2=14; w=10; offset=0; strand=D; shift=5; score=0.583619; -----cycCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA1596.1_shift0 (ZNF460)
; oligos_6nt_mkv2_m7 versus MA1596.1 (ZNF460); m=6/9; ncol2=16; w=10; offset=-5; strand=D; shift=0; score=0.574015; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA1587.1_shift1 (ZNF135)
; oligos_6nt_mkv2_m7 versus MA1587.1 (ZNF135); m=7/9; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.517299; -cCTCGACCTCCyrr- ; cor=; Ncor= a 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0

MA1630.1_rc_shift7 (Znf281_rc)
; oligos_6nt_mkv2_m7 versus MA1630.1_rc (Znf281_rc); m=8/9; ncol2=11; w=8; offset=2; strand=R; shift=7; score=0.490405; -------CcTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0

MA1578.1_shift7 (VEZF1)
; oligos_6nt_mkv2_m7 versus MA1578.1 (VEZF1); m=9/9; ncol2=10; w=8; offset=2; strand=D; shift=7; score=0.48657; -------CCCCCCmyt ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0

One-to-n matrix alignment; reference matrix: dyads_m8_shift0 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m8_shift0 (dyads_m8dyads_m8)
; dyads_m8 (dyads_m8dyads_m8); m=0 (reference); ncol1=15; shift=0; ncol=15; bsCwCAGCTGTCybk ; Alignment reference a 3 4 3 11 0 20 0 1 0 0 3 0 4 0 2 c 6 7 17 2 20 0 0 18 0 0 0 17 7 6 3 g 5 5 0 2 0 0 20 0 0 20 0 0 2 7 5 t 6 4 0 5 0 0 0 1 20 0 17 3 7 7 10

MA0832.1_rc_shift0 (Tcf21_rc)
; dyads_m8 versus MA0832.1_rc (Tcf21_rc); m=1/26; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.72667; ryAACAGCTGTTry- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1641.1_shift1 (MYF5)
; dyads_m8 versus MA1641.1 (MYF5); m=2/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.722314; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift1 (Ptf1a(var.2))
; dyads_m8 versus MA1619.1 (Ptf1a(var.2)); m=3/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.720857; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA1621.1_shift0 (Rbpjl)
; dyads_m8 versus MA1621.1 (Rbpjl); m=4/26; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.702627; svmaCACCTGtsyc- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA1485.1_rc_shift0 (FERD3L_rc)
; dyads_m8 versus MA1485.1_rc (FERD3L_rc); m=5/26; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.674627; GTrACAGCTGkyrC- ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA0499.2_shift1 (MYOD1)
; dyads_m8 versus MA0499.2 (MYOD1); m=6/26; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.672865; -cwgCACCTGTymy- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0500.2_shift1 (MYOG)
; dyads_m8 versus MA0500.2 (MYOG); m=7/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.658251; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1618.1_shift1 (Ptf1a)
; dyads_m8 versus MA1618.1 (Ptf1a); m=8/26; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.644188; -dmaCAGATGttkh- ; cor=; Ncor= a 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA0521.1_rc_shift1 (Tcf12_rc)
; dyads_m8 versus MA0521.1_rc (Tcf12_rc); m=9/26; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.64128; -cwsCAGCTGYy--- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)
; dyads_m8 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=10/26; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.619772; -rmaCAGGTGtky-- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0

MA0745.2_shift1 (SNAI2)
; dyads_m8 versus MA0745.2 (SNAI2); m=11/26; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.608573; -aygCACCTGTmry- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1571.1_shift1 (TGIF2LX)
; dyads_m8 versus MA1571.1 (TGIF2LX); m=12/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.596338; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0

MA1467.1_shift2 (ATOH1(var.2))
; dyads_m8 versus MA1467.1 (ATOH1(var.2)); m=13/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.596304; --AACAGCTGTY--- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0796.1_shift1 (TGIF1)
; dyads_m8 versus MA0796.1 (TGIF1); m=14/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.592017; -TGACAGCTGTCA-- ; cor=; Ncor= a 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1572.1_shift1 (TGIF2LY)
; dyads_m8 versus MA1572.1 (TGIF2LY); m=15/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.583373; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA0797.1_rc_shift1 (TGIF2_rc)
; dyads_m8 versus MA0797.1_rc (TGIF2_rc); m=16/26; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.577005; -TGACAsCTGTCA-- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0

MA1472.1_shift2 (BHLHA15(var.2))
; dyads_m8 versus MA1472.1 (BHLHA15(var.2)); m=17/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.566664; --avCAGCTGyy--- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)
; dyads_m8 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=18/26; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.556921; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0665.1_rc_shift2 (MSC_rc)
; dyads_m8 versus MA0665.1_rc (MSC_rc); m=19/26; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.544896; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_shift2 (TFAP4)
; dyads_m8 versus MA0691.1 (TFAP4); m=20/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.544646; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0667.1_shift2 (MYF6)
; dyads_m8 versus MA0667.1 (MYF6); m=21/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.525397; --AACArCTGTY--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1100.2_shift2 (ASCL1)
; dyads_m8 versus MA1100.2 (ASCL1); m=22/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.524735; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0816.1_shift2 (Ascl2)
; dyads_m8 versus MA0816.1 (Ascl2); m=23/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.520574; --arCAGCTGyy--- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA0048.2_shift2 (NHLH1)
; dyads_m8 versus MA0048.2 (NHLH1); m=24/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.51595; --cGCAGCTGCk--- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA0820.1_shift2 (FIGLA)
; dyads_m8 versus MA0820.1 (FIGLA); m=25/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.477025; --wmCACCTGkw--- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0774.1_rc_shift6 (MEIS2_rc)
; dyads_m8 versus MA0774.1_rc (MEIS2_rc); m=26/26; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.416501; ------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m25_shift3 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m25_shift3 (oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25)
; oligos_8nt_mkv2_m25 (oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25); m=0 (reference); ncol1=12; shift=3; ncol=17; ---gvAACAGTTGcr-- ; Alignment reference a 0 0 0 1 2 6 6 0 6 0 0 0 0 0 3 0 0 c 0 0 0 1 2 0 0 6 0 0 1 0 0 4 0 0 0 g 0 0 0 3 2 0 0 0 0 6 0 0 6 1 2 0 0 t 0 0 0 1 0 0 0 0 0 0 5 6 0 1 1 0 0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_8nt_mkv2_m25 versus MA0499.2_rc (MYOD1_rc); m=1/26; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.725981; ---rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA0100.3_rc_shift5 (MYB_rc)
; oligos_8nt_mkv2_m25 versus MA0100.3_rc (MYB_rc); m=2/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.693636; -----kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_8nt_mkv2_m25 versus MA0745.2_rc (SNAI2_rc); m=3/26; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.685787; ---rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA0667.1_rc_shift5 (MYF6_rc)
; oligos_8nt_mkv2_m25 versus MA0667.1_rc (MYF6_rc); m=4/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.664605; -----RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA1559.1_shift5 (SNAI3)
; oligos_8nt_mkv2_m25 versus MA1559.1 (SNAI3); m=5/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.652324; -----arCAGGTGya-- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0

MA0832.1_shift3 (Tcf21)
; oligos_8nt_mkv2_m25 versus MA0832.1 (Tcf21); m=6/26; ncol2=14; w=12; offset=0; strand=D; shift=3; score=0.637399; ---ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA0665.1_rc_shift5 (MSC_rc)
; oligos_8nt_mkv2_m25 versus MA0665.1_rc (MSC_rc); m=7/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.636844; -----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0

MA0816.1_shift5 (Ascl2)
; oligos_8nt_mkv2_m25 versus MA0816.1 (Ascl2); m=8/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.633827; -----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0521.1_shift5 (Tcf12)
; oligos_8nt_mkv2_m25 versus MA0521.1 (Tcf12); m=9/26; ncol2=11; w=10; offset=2; strand=D; shift=5; score=0.632493; -----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA1472.1_shift5 (BHLHA15(var.2))
; oligos_8nt_mkv2_m25 versus MA1472.1 (BHLHA15(var.2)); m=10/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.63047; -----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0

MA1619.1_shift4 (Ptf1a(var.2))
; oligos_8nt_mkv2_m25 versus MA1619.1 (Ptf1a(var.2)); m=11/26; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.625798; ----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA1641.1_shift4 (MYF5)
; oligos_8nt_mkv2_m25 versus MA1641.1 (MYF5); m=12/26; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.62486; ----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1467.1_shift5 (ATOH1(var.2))
; oligos_8nt_mkv2_m25 versus MA1467.1 (ATOH1(var.2)); m=13/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.62401; -----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0

MA0500.2_rc_shift4 (MYOG_rc)
; oligos_8nt_mkv2_m25 versus MA0500.2_rc (MYOG_rc); m=14/26; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.622044; ----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA0691.1_shift5 (TFAP4)
; oligos_8nt_mkv2_m25 versus MA0691.1 (TFAP4); m=15/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.614969; -----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_8nt_mkv2_m25 versus MA0820.1_rc (FIGLA_rc); m=16/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.609287; -----wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_8nt_mkv2_m25 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/26; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.608145; ----rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0

MA1542.1_rc_shift5 (OSR1_rc)
; oligos_8nt_mkv2_m25 versus MA1542.1_rc (OSR1_rc); m=18/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.597038; -----mACrGTAGCr-- ; cor=; Ncor= a 0 0 0 0 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 0 c 0 0 0 0 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 0 g 0 0 0 0 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 0 t 0 0 0 0 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0 0

MA1100.2_shift5 (ASCL1)
; oligos_8nt_mkv2_m25 versus MA1100.2 (ASCL1); m=19/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.592986; -----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0

MA1635.1_shift5 (BHLHE22(var.2))
; oligos_8nt_mkv2_m25 versus MA1635.1 (BHLHE22(var.2)); m=20/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.585375; -----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA0744.2_shift0 (SCRT2)
; oligos_8nt_mkv2_m25 versus MA0744.2 (SCRT2); m=21/26; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.561875; rrwkCAACAGGTggtw- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0

MA1618.1_shift4 (Ptf1a)
; oligos_8nt_mkv2_m25 versus MA1618.1 (Ptf1a); m=22/26; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.554526; ----dmaCAGATGttkh ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0

MA0743.2_shift0 (SCRT1)
; oligos_8nt_mkv2_m25 versus MA0743.2 (SCRT1); m=23/26; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.550565; wawkCAACAGGTGgtw- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0

MA1647.1_rc_shift1 (PRDM4_rc)
; oligos_8nt_mkv2_m25 versus MA1647.1_rc (PRDM4_rc); m=24/26; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.503192; -twGAAACAGhy----- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0 0

MA0869.1_shift5 (Sox11)
; oligos_8nt_mkv2_m25 versus MA0869.1 (Sox11); m=25/26; ncol2=15; w=10; offset=2; strand=D; shift=5; score=0.441022; -----AACAATTkCAGT ; cor=; Ncor= a 0 0 0 0 0 305.0 305.0 0.0 305.0 305.0 0.0 0.0 41.0 0.0 305.0 0.0 0.0 c 0 0 0 0 0 0.0 0.0 305.0 0.0 0.0 0.0 1.0 39.0 305.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 305.0 0.0 0.0 305.0 2.0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 305.0 305.0 425.0 1.0 0.0 99.0 305.0

MA0087.1_rc_shift4 (Sox5_rc)
; oligos_8nt_mkv2_m25 versus MA0087.1_rc (Sox5_rc); m=26/26; ncol2=7; w=7; offset=1; strand=R; shift=4; score=0.432693; ----wAACAAT------ ; cor=; Ncor= a 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 0 0 c 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 0 0 g 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m38_shift3 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m38_shift3 (dyads_m38dyads_m38)
; dyads_m38 (dyads_m38dyads_m38); m=0 (reference); ncol1=12; shift=3; ncol=17; ---twTTAAATAAww-- ; Alignment reference a 0 0 0 6 9 3 0 27 27 22 3 26 27 12 8 0 0 c 0 0 0 7 5 1 0 0 1 1 0 0 0 3 6 0 0 g 0 0 0 5 3 2 1 0 1 2 0 1 1 5 6 0 0 t 0 0 0 11 12 23 28 2 0 4 26 2 1 9 9 0 0

MA0639.1_shift3 (DBP)
; dyads_m38 versus MA0639.1 (DBP); m=1/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.714164; ---krTTAYRTAAya-- ; cor=; Ncor= a 0 0 0 1552.0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 2574.0 0 0 c 0 0 0 1714.0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 1657.0 0 0 g 0 0 0 1903.0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 1747.0 0 0 t 0 0 0 1930.0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0 1122.0 0 0

MA0843.1_shift3 (TEF)
; dyads_m38 versus MA0843.1 (TEF); m=2/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.707679; ---yrTTACrTAAym-- ; cor=; Ncor= a 0 0 0 541.0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 1383.0 0 0 c 0 0 0 1053.0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 1141.0 0 0 g 0 0 0 853.0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 554.0 0 0 t 0 0 0 1154.0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0 522.0 0 0

MA0621.1_rc_shift4 (mix-a_rc)
; dyads_m38 versus MA0621.1_rc (mix-a_rc); m=3/23; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.70679; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0

MA0135.1_shift2 (Lhx3)
; dyads_m38 versus MA0135.1 (Lhx3); m=4/23; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.678274; --wAATTAATTAwyy-- ; cor=; Ncor= a 0 0 9.0 16.0 19.0 0.0 0.0 19.0 20.0 2.0 0.0 16.0 9.0 2.0 2.0 0 0 c 0 0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 8.0 9.0 0 0 g 0 0 3.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 3.0 0 0 t 0 0 8.0 0.0 1.0 20.0 20.0 1.0 0.0 16.0 19.0 3.0 8.0 10.0 6.0 0 0

MA0025.2_rc_shift2 (NFIL3_rc)
; dyads_m38 versus MA0025.2_rc (NFIL3_rc); m=5/23; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.666504; --wtaTTrCATAAyw-- ; cor=; Ncor= a 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 c 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 g 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 t 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0

MA0703.2_rc_shift5 (LMX1B_rc)
; dyads_m38 versus MA0703.2_rc (LMX1B_rc); m=6/23; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.649413; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0

MA1463.1_shift4 (ARGFX)
; dyads_m38 versus MA1463.1 (ARGFX); m=7/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.609615; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0

MA0628.1_shift4 (POU6F1)
; dyads_m38 versus MA0628.1 (POU6F1); m=8/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.608898; ----ayTAATTArt--- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0

MA1487.1_shift3 (FOXE1)
; dyads_m38 versus MA1487.1 (FOXE1); m=9/23; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.590756; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0

MA0707.1_shift4 (MNX1)
; dyads_m38 versus MA0707.1 (MNX1); m=10/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.589425; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0

MA0601.1_shift2 (Arid3b)
; dyads_m38 versus MA0601.1 (Arid3b); m=11/23; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.568551; --awaTTAATwaa---- ; cor=; Ncor= a 0 0 468.0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 262.0 490.0 351.0 0 0 0 0 c 0 0 177.0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 168.0 170.0 216.0 0 0 0 0 g 0 0 177.0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 73.0 170.0 216.0 0 0 0 0 t 0 0 177.0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0 498.0 170.0 216.0 0 0 0 0

MA0853.1_shift1 (Alx4)
; dyads_m38 versus MA0853.1 (Alx4); m=12/23; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.55955; -cgcryTAATTArthas ; cor=; Ncor= a 0 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 17.0 29.0 36.0 23.0 c 0 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 23.0 28.0 23.0 29.0 g 0 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 18.0 13.0 19.0 25.0 t 0 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 42.0 30.0 22.0 23.0

MA0619.1_shift3 (LIN54)
; dyads_m38 versus MA0619.1 (LIN54); m=13/23; ncol2=9; w=9; offset=0; strand=D; shift=3; score=0.558337; ---wTTTrAATt----- ; cor=; Ncor= a 0 0 0 411.0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 243.0 0 0 0 0 0 c 0 0 0 91.0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 249.0 0 0 0 0 0 g 0 0 0 212.0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 159.0 0 0 0 0 0 t 0 0 0 285.0 999.0 999.0 788.0 0.0 0.0 0.0 685.0 350.0 0 0 0 0 0

MA0847.2_shift4 (FOXD2)
; dyads_m38 versus MA0847.2 (FOXD2); m=14/23; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.551184; ----sywAwRTAAAYAw ; cor=; Ncor= a 0 0 0 0 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 c 0 0 0 0 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 g 0 0 0 0 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 t 0 0 0 0 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0

MA0854.1_rc_shift0 (Alx1_rc)
; dyads_m38 versus MA0854.1_rc (Alx1_rc); m=15/23; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.540145; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0

MA0702.2_rc_shift5 (LMX1A_rc)
; dyads_m38 versus MA0702.2_rc (LMX1A_rc); m=16/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.536035; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0

MA0874.1_shift0 (Arx)
; dyads_m38 versus MA0874.1 (Arx); m=17/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.529196; gtscryTAATTArtksw ; cor=; Ncor= a 24.0 13.0 16.0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 16.0 18.0 9.0 53.0 c 22.0 16.0 37.0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 16.0 11.0 36.0 10.0 g 40.0 19.0 29.0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 14.0 44.0 37.0 7.0 t 14.0 52.0 19.0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 54.0 27.0 18.0 30.0

MA0704.1_rc_shift5 (Lhx4_rc)
; dyads_m38 versus MA0704.1_rc (Lhx4_rc); m=18/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.505489; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 275.0 135.0 2896.0 2896.0 155.0 255.0 2896.0 1161.0 0 0 0 0 c 0 0 0 0 0 857.0 316.0 57.0 0.0 0.0 309.0 0.0 495.0 0 0 0 0 g 0 0 0 0 0 449.0 39.0 446.0 0.0 0.0 428.0 912.0 817.0 0 0 0 0 t 0 0 0 0 0 1314.0 2896.0 0.0 0.0 2896.0 2896.0 217.0 422.0 0 0 0 0

MA0851.1_shift0 (Foxj3)
; dyads_m38 versus MA0851.1 (Foxj3); m=19/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.50405; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0

MA0674.1_rc_shift5 (NKX6-1_rc)
; dyads_m38 versus MA0674.1_rc (NKX6-1_rc); m=20/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.479272; -----tTAATkRs---- ; cor=; Ncor= a 0 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 381.0 0 0 0 0 c 0 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 734.0 0 0 0 0 g 0 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 695.0 0 0 0 0 t 0 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 403.0 0 0 0 0

MA0715.1_rc_shift6 (PROP1_rc)
; dyads_m38 versus MA0715.1_rc (PROP1_rc); m=21/23; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.451684; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0

MA0151.1_shift4 (Arid3a)
; dyads_m38 versus MA0151.1 (Arid3a); m=22/23; ncol2=6; w=6; offset=1; strand=D; shift=4; score=0.425255; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0

MA0033.2_shift5 (FOXL1)
; dyads_m38 versus MA0033.2 (FOXL1); m=23/23; ncol2=7; w=7; offset=2; strand=D; shift=5; score=0.423816; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m25_shift1 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m25_shift1 (dyads_m25dyads_m25)
; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=17; shift=1; ncol=18; -dkAACAGCTGCTGyCyt ; Alignment reference a 0 4 2 12 13 0 15 0 0 3 0 1 1 0 2 0 3 3 c 0 2 3 1 0 15 0 1 15 0 0 12 0 1 4 12 4 3 g 0 4 6 2 2 0 0 13 0 0 15 0 0 13 1 1 0 3 t 0 5 4 0 0 0 0 1 0 12 0 2 14 1 8 2 8 6

MA0832.1_shift1 (Tcf21)
; dyads_m25 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.71051; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m25 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.616578; -GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m25 versus MA0500.2_rc (MYOG_rc); m=3/20; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.597222; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m25 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.580397; -rkrACAGGTGcwg---- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0

MA1641.1_shift2 (MYF5)
; dyads_m25 versus MA1641.1 (MYF5); m=5/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.569539; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; dyads_m25 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.56528; ---rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m25 versus MA1619.1 (Ptf1a(var.2)); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.563369; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m25 versus MA0816.1 (Ascl2); m=8/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.548385; ---arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA1618.1_rc_shift1 (Ptf1a_rc)
; dyads_m25 versus MA1618.1_rc (Ptf1a_rc); m=9/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.545304; -dmaaCATCTGtkh---- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; dyads_m25 versus MA0091.1 (TAL1::TCF3); m=10/20; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.544554; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m25 versus MA0665.1 (MSC); m=11/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.532233; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m25 versus MA0691.1 (TFAP4); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.522601; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m25 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.517149; ---rrCAGCTGbt----- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m25 versus MA0667.1_rc (MYF6_rc); m=14/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502897; ---RACAGyTGTT----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m25 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502638; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m25 versus MA1100.2_rc (ASCL1_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.487063; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m25 versus MA1635.1 (BHLHE22(var.2)); m=17/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.475638; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; dyads_m25 versus MA1655.1 (ZNF341); m=18/20; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.472656; grGAACAGCcas------ ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; dyads_m25 versus MA0048.2 (NHLH1); m=19/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.467729; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA0820.1_shift3 (FIGLA)
; dyads_m25 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.441821; ---wmCACCTGkw----- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m8_shift2 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m8_shift2 (oligos_8nt_mkv2_m8oligos_8nt_mkv2_m8)
; oligos_8nt_mkv2_m8 (oligos_8nt_mkv2_m8oligos_8nt_mkv2_m8); m=0 (reference); ncol1=16; shift=2; ncol=18; --rgmACAGCTGCTGcws ; Alignment reference a 0 0 6 4 5 16 0 17 0 0 1 0 0 1 1 2 5 3 c 0 0 4 4 9 0 18 0 0 18 0 0 16 0 1 12 3 5 g 0 0 5 6 3 1 0 1 18 0 0 18 1 0 15 1 4 6 t 0 0 3 4 1 1 0 0 0 0 17 0 1 17 1 3 6 4

MA0832.1_shift2 (Tcf21)
; oligos_8nt_mkv2_m8 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.709616; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA1485.1_rc_shift2 (FERD3L_rc)
; oligos_8nt_mkv2_m8 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.688771; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_shift3 (MYOG)
; oligos_8nt_mkv2_m8 versus MA0500.2 (MYOG); m=3/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.641993; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0499.2_rc_shift2 (MYOD1_rc)
; oligos_8nt_mkv2_m8 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.641684; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1529.1_rc_shift0 (NHLH2_rc)
; oligos_8nt_mkv2_m8 versus MA1529.1_rc (NHLH2_rc); m=5/20; ncol2=18; w=16; offset=-2; strand=R; shift=0; score=0.634286; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0

MA1619.1_shift3 (Ptf1a(var.2))
; oligos_8nt_mkv2_m8 versus MA1619.1 (Ptf1a(var.2)); m=6/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.619934; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_shift3 (MYF5)
; oligos_8nt_mkv2_m8 versus MA1641.1 (MYF5); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.618658; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA0521.1_shift4 (Tcf12)
; oligos_8nt_mkv2_m8 versus MA0521.1 (Tcf12); m=8/20; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.600137; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1618.1_shift3 (Ptf1a)
; oligos_8nt_mkv2_m8 versus MA1618.1 (Ptf1a); m=9/20; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.573665; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0816.1_shift4 (Ascl2)
; oligos_8nt_mkv2_m8 versus MA0816.1 (Ascl2); m=10/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.561021; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m8 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.545905; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0665.1_shift4 (MSC)
; oligos_8nt_mkv2_m8 versus MA0665.1 (MSC); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.532889; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift4 (TFAP4)
; oligos_8nt_mkv2_m8 versus MA0691.1 (TFAP4); m=13/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.52861; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0048.2_shift4 (NHLH1)
; oligos_8nt_mkv2_m8 versus MA0048.2 (NHLH1); m=14/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.528143; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; oligos_8nt_mkv2_m8 versus MA1635.1 (BHLHE22(var.2)); m=15/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.527794; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m8 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.525549; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA1100.2_rc_shift4 (ASCL1_rc)
; oligos_8nt_mkv2_m8 versus MA1100.2_rc (ASCL1_rc); m=17/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.522275; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0667.1_rc_shift4 (MYF6_rc)
; oligos_8nt_mkv2_m8 versus MA0667.1_rc (MYF6_rc); m=18/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.500608; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1648.1_shift4 (TCF12(var.2))
; oligos_8nt_mkv2_m8 versus MA1648.1 (TCF12(var.2)); m=19/20; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.482145; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; oligos_8nt_mkv2_m8 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.458351; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m12_shift0 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m12_shift0 (oligos_8nt_mkv2_m12oligos_8nt_mkv2_m12)
; oligos_8nt_mkv2_m12 (oligos_8nt_mkv2_m12oligos_8nt_mkv2_m12); m=0 (reference); ncol1=16; shift=0; ncol=16; gmyGaCAGCTGtCrkc ; Alignment reference a 1 3 0 1 4 0 6 0 0 0 0 1 0 4 0 0 c 1 3 2 0 0 6 0 0 6 0 0 1 5 0 0 4 g 4 0 0 5 1 0 0 6 0 0 6 0 0 2 3 1 t 0 0 4 0 1 0 0 0 0 6 0 4 1 0 3 1

MA0796.1_shift2 (TGIF1)
; oligos_8nt_mkv2_m12 versus MA0796.1 (TGIF1); m=1/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.707454; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1571.1_shift2 (TGIF2LX)
; oligos_8nt_mkv2_m12 versus MA1571.1 (TGIF2LX); m=2/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.705007; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0

MA1572.1_shift2 (TGIF2LY)
; oligos_8nt_mkv2_m12 versus MA1572.1 (TGIF2LY); m=3/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.695627; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0

MA0797.1_shift2 (TGIF2)
; oligos_8nt_mkv2_m12 versus MA0797.1 (TGIF2); m=4/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.695368; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_8nt_mkv2_m12 versus MA0832.1_rc (Tcf21_rc); m=5/24; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.674332; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0783.1_shift2 (PKNOX2)
; oligos_8nt_mkv2_m12 versus MA0783.1 (PKNOX2); m=6/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.663775; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_8nt_mkv2_m12 versus MA1641.1_rc (MYF5_rc); m=7/24; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.653238; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv2_m12 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=8/24; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.637389; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_8nt_mkv2_m12 versus MA0500.2_rc (MYOG_rc); m=9/24; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.622075; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1485.1_shift1 (FERD3L)
; oligos_8nt_mkv2_m12 versus MA1485.1 (FERD3L); m=10/24; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.620861; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0499.2_shift2 (MYOD1)
; oligos_8nt_mkv2_m12 versus MA0499.2 (MYOD1); m=11/24; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.590856; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_rc_shift2 (Tcf12_rc)
; oligos_8nt_mkv2_m12 versus MA0521.1_rc (Tcf12_rc); m=12/24; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.586871; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m12 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.581043; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_8nt_mkv2_m12 versus MA1472.1 (BHLHA15(var.2)); m=14/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.545434; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_8nt_mkv2_m12 versus MA1620.1 (Ptf1a(var.3)); m=15/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.535664; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_8nt_mkv2_m12 versus MA1635.1 (BHLHE22(var.2)); m=16/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.532109; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_8nt_mkv2_m12 versus MA1100.2_rc (ASCL1_rc); m=17/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.528421; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA0665.1_rc_shift3 (MSC_rc)
; oligos_8nt_mkv2_m12 versus MA0665.1_rc (MSC_rc); m=18/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.522048; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; oligos_8nt_mkv2_m12 versus MA0816.1_rc (Ascl2_rc); m=19/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.521859; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_8nt_mkv2_m12 versus MA0691.1 (TFAP4); m=20/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.515482; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0667.1_shift3 (MYF6)
; oligos_8nt_mkv2_m12 versus MA0667.1 (MYF6); m=21/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.50546; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_8nt_mkv2_m12 versus MA0048.2 (NHLH1); m=22/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.453073; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA0820.1_shift3 (FIGLA)
; oligos_8nt_mkv2_m12 versus MA0820.1 (FIGLA); m=23/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.445329; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; oligos_8nt_mkv2_m12 versus MA0774.1_rc (MEIS2_rc); m=24/24; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.412467; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 27 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2 (oligos_7nt_mkv2_m2oligos_7nt_mkv2_m2); m=0 (reference); ncol1=16; shift=0; ncol=16; gsrGACAGCTGCTkmt ; Alignment reference a 8 7 11 6 32 1 34 0 0 0 0 1 5 5 9 8 c 6 9 6 4 0 33 0 0 33 0 0 30 2 6 10 7 g 13 12 11 24 2 0 0 33 1 0 34 1 2 14 8 8 t 7 6 6 0 0 0 0 1 0 34 0 2 25 9 7 11

MA0832.1_shift1 (Tcf21)
; oligos_7nt_mkv2_m2 versus MA0832.1 (Tcf21); m=1/26; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.704741; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_7nt_mkv2_m2 versus MA0499.2_rc (MYOD1_rc); m=2/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.704498; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_7nt_mkv2_m2 versus MA0500.2_rc (MYOG_rc); m=3/26; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.662681; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_7nt_mkv2_m2 versus MA1485.1_rc (FERD3L_rc); m=4/26; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.651797; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0

MA1641.1_shift2 (MYF5)
; oligos_7nt_mkv2_m2 versus MA1641.1 (MYF5); m=5/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.646514; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_7nt_mkv2_m2 versus MA1619.1 (Ptf1a(var.2)); m=6/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.641559; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_7nt_mkv2_m2 versus MA0521.1 (Tcf12); m=7/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.633621; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1621.1_rc_shift1 (Rbpjl_rc)
; oligos_7nt_mkv2_m2 versus MA1621.1_rc (Rbpjl_rc); m=8/26; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.630481; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; oligos_7nt_mkv2_m2 versus MA0745.2_rc (SNAI2_rc); m=9/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.617695; -rykACAGGTGcrt-- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0

MA1618.1_shift2 (Ptf1a)
; oligos_7nt_mkv2_m2 versus MA1618.1 (Ptf1a); m=10/26; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.600104; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0

MA1631.1_shift2 (ASCL1(var.2))
; oligos_7nt_mkv2_m2 versus MA1631.1 (ASCL1(var.2)); m=11/26; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.573184; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA0830.2_rc_shift1 (TCF4_rc)
; oligos_7nt_mkv2_m2 versus MA0830.2_rc (TCF4_rc); m=12/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.569602; -ssggCAGGTGccg-- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_7nt_mkv2_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.557056; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_7nt_mkv2_m2 versus MA0816.1 (Ascl2); m=14/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.555606; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_7nt_mkv2_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.547892; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_7nt_mkv2_m2 versus MA1100.2_rc (ASCL1_rc); m=16/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.53709; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_7nt_mkv2_m2 versus MA1620.1 (Ptf1a(var.3)); m=17/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.535168; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_7nt_mkv2_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.530379; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_7nt_mkv2_m2 versus MA0665.1 (MSC); m=19/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.526806; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_7nt_mkv2_m2 versus MA0691.1 (TFAP4); m=20/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.511725; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_7nt_mkv2_m2 versus MA0048.2 (NHLH1); m=21/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.502345; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_7nt_mkv2_m2 versus MA0667.1_rc (MYF6_rc); m=22/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.500679; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_7nt_mkv2_m2 versus MA1648.1 (TCF12(var.2)); m=23/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.49648; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0

MA0522.3_shift3 (TCF3)
; oligos_7nt_mkv2_m2 versus MA0522.3 (TCF3); m=24/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.493071; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_7nt_mkv2_m2 versus MA0820.1_rc (FIGLA_rc); m=25/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.457399; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA1559.1_shift3 (SNAI3)
; oligos_7nt_mkv2_m2 versus MA1559.1 (SNAI3); m=26/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.443204; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m2_shift0 ; 23 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m2_shift0 (oligos_8nt_mkv2_m2oligos_8nt_mkv2_m2)
; oligos_8nt_mkv2_m2 (oligos_8nt_mkv2_m2oligos_8nt_mkv2_m2); m=0 (reference); ncol1=17; shift=0; ncol=17; swsAACAGCTGCTGchm ; Alignment reference a 1 7 1 16 16 0 20 0 0 0 0 0 1 3 4 6 6 c 7 3 12 4 0 21 0 0 20 0 0 19 1 1 13 6 9 g 9 4 7 1 4 0 1 21 1 0 21 1 0 15 2 1 2 t 4 7 1 0 1 0 0 0 0 21 0 1 19 2 2 8 4

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_8nt_mkv2_m2 versus MA0832.1_rc (Tcf21_rc); m=1/22; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.697458; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_8nt_mkv2_m2 versus MA1485.1_rc (FERD3L_rc); m=2/22; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.628966; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_8nt_mkv2_m2 versus MA0500.2_rc (MYOG_rc); m=3/22; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.618289; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_8nt_mkv2_m2 versus MA0499.2_rc (MYOD1_rc); m=4/22; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.59234; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_8nt_mkv2_m2 versus MA0521.1 (Tcf12); m=5/22; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.58166; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1641.1_shift2 (MYF5)
; oligos_8nt_mkv2_m2 versus MA1641.1 (MYF5); m=6/22; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.575604; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_8nt_mkv2_m2 versus MA1619.1 (Ptf1a(var.2)); m=7/22; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.573962; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_8nt_mkv2_m2 versus MA0816.1 (Ascl2); m=8/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.557787; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1618.1_shift2 (Ptf1a)
; oligos_8nt_mkv2_m2 versus MA1618.1 (Ptf1a); m=9/22; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.537325; --dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; oligos_8nt_mkv2_m2 versus MA0091.1 (TAL1::TCF3); m=10/22; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.525258; -mgAmCAKMTGkT---- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_8nt_mkv2_m2 versus MA0665.1 (MSC); m=11/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.520314; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_8nt_mkv2_m2 versus MA0691.1 (TFAP4); m=12/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.520036; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.519368; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_8nt_mkv2_m2 versus MA1100.2_rc (ASCL1_rc); m=14/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.501966; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA1655.1_shift0 (ZNF341)
; oligos_8nt_mkv2_m2 versus MA1655.1 (ZNF341); m=15/22; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.501766; grGAACAGCcas----- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; oligos_8nt_mkv2_m2 versus MA1467.1 (ATOH1(var.2)); m=16/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.497684; ---AACAGCTGTY---- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_8nt_mkv2_m2 versus MA0048.2 (NHLH1); m=17/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.495303; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_8nt_mkv2_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.494796; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_8nt_mkv2_m2 versus MA0667.1_rc (MYF6_rc); m=19/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.489586; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; oligos_8nt_mkv2_m2 versus MA1648.1 (TCF12(var.2)); m=20/22; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.454566; ---ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_8nt_mkv2_m2 versus MA0820.1_rc (FIGLA_rc); m=21/22; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.446213; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

MA1559.1_shift3 (SNAI3)
; oligos_8nt_mkv2_m2 versus MA1559.1 (SNAI3); m=22/22; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.41831; ---arCAGGTGya---- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1 (oligos_7nt_mkv2_m1oligos_7nt_mkv2_m1); m=0 (reference); ncol1=16; shift=0; ncol=16; vmwGaCAGCTGtCwkb ; Alignment reference a 10 7 10 2 17 0 28 0 0 0 0 6 0 14 2 2 c 7 18 2 1 3 28 0 0 28 0 0 2 25 2 1 9 g 9 1 2 25 2 0 0 28 0 0 28 3 1 2 18 7 t 2 2 14 0 6 0 0 0 0 28 0 17 2 10 7 10

MA1571.1_rc_shift2 (TGIF2LX_rc)
; oligos_7nt_mkv2_m1 versus MA1571.1_rc (TGIF2LX_rc); m=1/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.69192; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0796.1_shift2 (TGIF1)
; oligos_7nt_mkv2_m1 versus MA0796.1 (TGIF1); m=2/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.690711; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; oligos_7nt_mkv2_m1 versus MA1572.1_rc (TGIF2LY_rc); m=3/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.685791; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0797.1_shift2 (TGIF2)
; oligos_7nt_mkv2_m1 versus MA0797.1 (TGIF2); m=4/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.679384; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1641.1_rc_shift2 (MYF5_rc)
; oligos_7nt_mkv2_m1 versus MA1641.1_rc (MYF5_rc); m=5/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.658901; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; oligos_7nt_mkv2_m1 versus MA0783.1_rc (PKNOX2_rc); m=6/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.646973; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_7nt_mkv2_m1 versus MA1619.1 (Ptf1a(var.2)); m=7/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.64604; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; oligos_7nt_mkv2_m1 versus MA0832.1_rc (Tcf21_rc); m=8/23; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.623047; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_7nt_mkv2_m1 versus MA0500.2_rc (MYOG_rc); m=9/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.616666; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0499.2_shift2 (MYOD1)
; oligos_7nt_mkv2_m1 versus MA0499.2 (MYOD1); m=10/23; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.587234; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_shift3 (Tcf12)
; oligos_7nt_mkv2_m1 versus MA0521.1 (Tcf12); m=11/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.573088; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; oligos_7nt_mkv2_m1 versus MA1467.1 (ATOH1(var.2)); m=12/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.564651; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; oligos_7nt_mkv2_m1 versus MA1620.1 (Ptf1a(var.3)); m=13/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.545024; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; oligos_7nt_mkv2_m1 versus MA1472.1 (BHLHA15(var.2)); m=14/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.532933; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1593.1_rc_shift2 (ZNF317_rc)
; oligos_7nt_mkv2_m1 versus MA1593.1_rc (ZNF317_rc); m=15/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.531432; --wrTCTGCTGTyw-- ; cor=; Ncor= a 0 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 0 c 0 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 0 g 0 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 0 t 0 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_7nt_mkv2_m1 versus MA1635.1 (BHLHE22(var.2)); m=16/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.527849; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_shift3 (ASCL1)
; oligos_7nt_mkv2_m1 versus MA1100.2 (ASCL1); m=17/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.512965; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_7nt_mkv2_m1 versus MA0691.1 (TFAP4); m=18/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.501115; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_7nt_mkv2_m1 versus MA0665.1 (MSC); m=19/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.497266; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; oligos_7nt_mkv2_m1 versus MA0816.1_rc (Ascl2_rc); m=20/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.496066; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_7nt_mkv2_m1 versus MA0667.1_rc (MYF6_rc); m=21/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47827; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_7nt_mkv2_m1 versus MA0820.1_rc (FIGLA_rc); m=22/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.438405; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; oligos_7nt_mkv2_m1 versus MA0774.1_rc (MEIS2_rc); m=23/23; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.405982; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

One-to-n matrix alignment; reference matrix: dyads_m1_shift0 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m1_shift0 (dyads_m1dyads_m1)
; dyads_m1 (dyads_m1dyads_m1); m=0 (reference); ncol1=16; shift=0; ncol=16; vmwGaCAGCTGtCwkb ; Alignment reference a 10 7 10 2 17 0 28 0 0 0 0 6 0 14 2 2 c 7 18 2 1 3 28 0 0 28 0 0 2 25 2 1 9 g 9 1 2 25 2 0 0 28 0 0 28 3 1 2 18 7 t 2 2 14 0 6 0 0 0 0 28 0 17 2 10 7 10

MA1571.1_rc_shift2 (TGIF2LX_rc)
; dyads_m1 versus MA1571.1_rc (TGIF2LX_rc); m=1/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.69192; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0

MA0796.1_shift2 (TGIF1)
; dyads_m1 versus MA0796.1 (TGIF1); m=2/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.690711; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0

MA1572.1_rc_shift2 (TGIF2LY_rc)
; dyads_m1 versus MA1572.1_rc (TGIF2LY_rc); m=3/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.685791; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0 0

MA0797.1_shift2 (TGIF2)
; dyads_m1 versus MA0797.1 (TGIF2); m=4/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.679384; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0

MA1641.1_rc_shift2 (MYF5_rc)
; dyads_m1 versus MA1641.1_rc (MYF5_rc); m=5/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.658901; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0783.1_rc_shift2 (PKNOX2_rc)
; dyads_m1 versus MA0783.1_rc (PKNOX2_rc); m=6/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.646973; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m1 versus MA1619.1 (Ptf1a(var.2)); m=7/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.64604; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0

MA0832.1_rc_shift1 (Tcf21_rc)
; dyads_m1 versus MA0832.1_rc (Tcf21_rc); m=8/23; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.623047; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m1 versus MA0500.2_rc (MYOG_rc); m=9/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.616666; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA0499.2_shift2 (MYOD1)
; dyads_m1 versus MA0499.2 (MYOD1); m=10/23; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.587234; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_shift3 (Tcf12)
; dyads_m1 versus MA0521.1 (Tcf12); m=11/23; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.573088; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0

MA1467.1_shift3 (ATOH1(var.2))
; dyads_m1 versus MA1467.1 (ATOH1(var.2)); m=12/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.564651; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA1620.1_shift2 (Ptf1a(var.3))
; dyads_m1 versus MA1620.1 (Ptf1a(var.3)); m=13/23; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.545024; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0

MA1472.1_shift3 (BHLHA15(var.2))
; dyads_m1 versus MA1472.1 (BHLHA15(var.2)); m=14/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.532933; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1593.1_rc_shift2 (ZNF317_rc)
; dyads_m1 versus MA1593.1_rc (ZNF317_rc); m=15/23; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.531432; --wrTCTGCTGTyw-- ; cor=; Ncor= a 0 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 0 c 0 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 0 g 0 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 0 t 0 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m1 versus MA1635.1 (BHLHE22(var.2)); m=16/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.527849; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0

MA1100.2_shift3 (ASCL1)
; dyads_m1 versus MA1100.2 (ASCL1); m=17/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.512965; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m1 versus MA0691.1 (TFAP4); m=18/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.501115; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m1 versus MA0665.1 (MSC); m=19/23; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.497266; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0

MA0816.1_rc_shift3 (Ascl2_rc)
; dyads_m1 versus MA0816.1_rc (Ascl2_rc); m=20/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.496066; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m1 versus MA0667.1_rc (MYF6_rc); m=21/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.47827; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; dyads_m1 versus MA0820.1_rc (FIGLA_rc); m=22/23; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.438405; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

MA0774.1_rc_shift7 (MEIS2_rc)
; dyads_m1 versus MA0774.1_rc (MEIS2_rc); m=23/23; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.405982; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m3_shift4 ; 28 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m3_shift4 (oligos_8nt_mkv2_m3oligos_8nt_mkv2_m3)
; oligos_8nt_mkv2_m3 (oligos_8nt_mkv2_m3oligos_8nt_mkv2_m3); m=0 (reference); ncol1=15; shift=4; ncol=19; ----rstGACAGCTGMskg ; Alignment reference a 0 0 0 0 10 4 4 0 23 0 24 0 0 0 0 17 5 3 5 c 0 0 0 0 2 11 1 0 0 24 0 0 24 0 0 6 6 5 4 g 0 0 0 0 8 8 3 24 1 0 0 24 0 0 24 0 8 9 10 t 0 0 0 0 4 1 16 0 0 0 0 0 0 24 0 1 5 7 5

MA0499.2_rc_shift5 (MYOD1_rc)
; oligos_8nt_mkv2_m3 versus MA0499.2_rc (MYOD1_rc); m=1/27; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.691846; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0

MA1485.1_rc_shift5 (FERD3L_rc)
; oligos_8nt_mkv2_m3 versus MA1485.1_rc (FERD3L_rc); m=2/27; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.671908; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0

MA1641.1_shift6 (MYF5)
; oligos_8nt_mkv2_m3 versus MA1641.1 (MYF5); m=3/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.665982; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0

MA1619.1_shift6 (Ptf1a(var.2))
; oligos_8nt_mkv2_m3 versus MA1619.1 (Ptf1a(var.2)); m=4/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.661915; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0

MA0832.1_shift5 (Tcf21)
; oligos_8nt_mkv2_m3 versus MA0832.1 (Tcf21); m=5/27; ncol2=14; w=14; offset=1; strand=D; shift=5; score=0.658441; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0

MA0521.1_shift7 (Tcf12)
; oligos_8nt_mkv2_m3 versus MA0521.1 (Tcf12); m=6/27; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.653264; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0

MA0500.2_rc_shift6 (MYOG_rc)
; oligos_8nt_mkv2_m3 versus MA0500.2_rc (MYOG_rc); m=7/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.643314; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0

MA1593.1_shift6 (ZNF317)
; oligos_8nt_mkv2_m3 versus MA1593.1 (ZNF317); m=8/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.630911; ------wrACAGCAGAyw- ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0

MA1571.1_rc_shift6 (TGIF2LX_rc)
; oligos_8nt_mkv2_m3 versus MA1571.1_rc (TGIF2LX_rc); m=9/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.624036; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0

MA0796.1_shift6 (TGIF1)
; oligos_8nt_mkv2_m3 versus MA0796.1 (TGIF1); m=10/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.618796; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0

MA1572.1_rc_shift6 (TGIF2LY_rc)
; oligos_8nt_mkv2_m3 versus MA1572.1_rc (TGIF2LY_rc); m=11/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.61698; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0

MA0745.2_rc_shift5 (SNAI2_rc)
; oligos_8nt_mkv2_m3 versus MA0745.2_rc (SNAI2_rc); m=12/27; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.614116; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0

MA0797.1_shift6 (TGIF2)
; oligos_8nt_mkv2_m3 versus MA0797.1 (TGIF2); m=13/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.609259; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0

MA0783.1_shift6 (PKNOX2)
; oligos_8nt_mkv2_m3 versus MA0783.1 (PKNOX2); m=14/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.573586; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0

MA1467.1_rc_shift7 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m3 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.569183; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0

MA1635.1_shift7 (BHLHE22(var.2))
; oligos_8nt_mkv2_m3 versus MA1635.1 (BHLHE22(var.2)); m=16/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.548525; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0

MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m3 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.543711; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0

MA0691.1_shift7 (TFAP4)
; oligos_8nt_mkv2_m3 versus MA0691.1 (TFAP4); m=18/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.533233; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0

MA1100.2_rc_shift7 (ASCL1_rc)
; oligos_8nt_mkv2_m3 versus MA1100.2_rc (ASCL1_rc); m=19/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.529148; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0

MA0816.1_shift7 (Ascl2)
; oligos_8nt_mkv2_m3 versus MA0816.1 (Ascl2); m=20/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.512682; -------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0

MA0665.1_shift7 (MSC)
; oligos_8nt_mkv2_m3 versus MA0665.1 (MSC); m=21/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.504865; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0

MA0048.2_rc_shift7 (NHLH1_rc)
; oligos_8nt_mkv2_m3 versus MA0048.2_rc (NHLH1_rc); m=22/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.482774; -------mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0

MA0667.1_rc_shift7 (MYF6_rc)
; oligos_8nt_mkv2_m3 versus MA0667.1_rc (MYF6_rc); m=23/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.480043; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0

MA0774.1_shift5 (MEIS2)
; oligos_8nt_mkv2_m3 versus MA0774.1 (MEIS2); m=24/27; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.469725; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0

MA0775.1_shift5 (MEIS3)
; oligos_8nt_mkv2_m3 versus MA0775.1 (MEIS3); m=25/27; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.448259; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

MA0782.2_shift0 (PKNOX1)
; oligos_8nt_mkv2_m3 versus MA0782.2 (PKNOX1); m=26/27; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.438262; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0

MA0498.2_shift5 (MEIS1)
; oligos_8nt_mkv2_m3 versus MA0498.2 (MEIS1); m=27/27; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.420236; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m23_shift4 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m23_shift4 (oligos_8nt_mkv2_m23oligos_8nt_mkv2_m23)
; oligos_8nt_mkv2_m23 (oligos_8nt_mkv2_m23oligos_8nt_mkv2_m23); m=0 (reference); ncol1=12; shift=4; ncol=20; ----hkCCTTCCTCyb---- ; Alignment reference a 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 2 1 8 8 0 0 8 8 0 8 3 3 0 0 0 0 g 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 2 0 0 0 0 t 0 0 0 0 3 4 0 0 7 8 0 0 8 0 4 3 0 0 0 0

MA0764.2_rc_shift5 (ETV4_rc)
; oligos_8nt_mkv2_m23 versus MA0764.2_rc (ETV4_rc); m=1/8; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.690392; -----yrCTTCCTgy----- ; cor=; Ncor= a 0 0 0 0 0 1426.0 2975.0 31.0 8.0 40.0 67.0 14.0 0.0 664.0 1080.0 0 0 0 0 0 c 0 0 0 0 0 3055.0 1949.0 8344.0 0.0 0.0 8345.0 8308.0 0.0 1936.0 2721.0 0 0 0 0 0 g 0 0 0 0 0 1597.0 2194.0 28.0 73.0 0.0 1.0 92.0 61.0 4608.0 1494.0 0 0 0 0 0 t 0 0 0 0 0 2336.0 1296.0 11.0 8333.0 8374.0 1.0 0.0 8353.0 1206.0 3119.0 0 0 0 0 0

MA0508.3_shift5 (PRDM1)
; oligos_8nt_mkv2_m23 versus MA0508.3 (PRDM1); m=2/8; ncol2=11; w=11; offset=1; strand=D; shift=5; score=0.673603; -----ywCTTTCTCty---- ; cor=; Ncor= a 0 0 0 0 0 8762.0 17153.0 1199.0 1283.0 2181.0 1813.0 1377.0 3549.0 1710.0 10522.0 10124.0 0 0 0 0 c 0 0 0 0 0 17788.0 12288.0 52752.0 467.0 1346.0 488.0 53465.0 1076.0 52821.0 13567.0 17518.0 0 0 0 0 g 0 0 0 0 0 6638.0 8768.0 701.0 826.0 1011.0 561.0 207.0 1390.0 290.0 4098.0 7861.0 0 0 0 0 t 0 0 0 0 0 22293.0 17272.0 829.0 52905.0 50943.0 52619.0 432.0 49466.0 660.0 27294.0 19978.0 0 0 0 0

MA0081.2_shift2 (SPIB)
; oligos_8nt_mkv2_m23 versus MA0081.2 (SPIB); m=3/8; ncol2=16; w=12; offset=-2; strand=D; shift=2; score=0.542384; --tytCACTTCCTCttty-- ; cor=; Ncor= a 0 0 5347.0 4682.0 2179.0 379.0 24319.0 239.0 450.0 190.0 206.0 275.0 865.0 1020.0 4963.0 2838.0 4159.0 4026.0 0 0 c 0 0 5797.0 8293.0 6429.0 23971.0 619.0 22730.0 236.0 200.0 26145.0 25492.0 4517.0 20113.0 3922.0 5425.0 6029.0 8589.0 0 0 g 0 0 4026.0 4544.0 3193.0 1721.0 669.0 2516.0 157.0 243.0 153.0 129.0 1829.0 2316.0 781.0 2087.0 2409.0 4165.0 0 0 t 0 0 11760.0 9411.0 15129.0 859.0 1323.0 1445.0 26087.0 26297.0 426.0 1034.0 19719.0 3481.0 17264.0 16580.0 14333.0 10150.0 0 0

MA0687.1_rc_shift5 (SPIC_rc)
; oligos_8nt_mkv2_m23 versus MA0687.1_rc (SPIC_rc); m=4/8; ncol2=14; w=11; offset=1; strand=R; shift=5; score=0.534933; -----tACTTCCksWTTtt- ; cor=; Ncor= a 0 0 0 0 0 19.0 194.0 0.0 8.0 16.0 26.0 3.0 0.0 13.0 75.0 4.0 18.0 40.0 72.0 0 c 0 0 0 0 0 9.0 17.0 231.0 13.0 0.0 232.0 217.0 48.0 181.0 0.0 0.0 13.0 70.0 68.0 0 g 0 0 0 0 0 36.0 24.0 0.0 31.0 7.0 0.0 8.0 59.0 75.0 0.0 9.0 25.0 31.0 83.0 0 t 0 0 0 0 0 115.0 45.0 13.0 192.0 204.0 13.0 0.0 88.0 30.0 171.0 194.0 186.0 162.0 144.0 0

MA1508.1_rc_shift6 (IKZF1_rc)
; oligos_8nt_mkv2_m23 versus MA1508.1_rc (IKZF1_rc); m=5/8; ncol2=12; w=10; offset=2; strand=R; shift=6; score=0.505385; ------ryTTCCTGTTyy-- ; cor=; Ncor= a 0 0 0 0 0 0 3389.0 1024.0 289.0 51.0 137.0 118.0 260.0 295.0 352.0 631.0 1571.0 1695.0 0 0 c 0 0 0 0 0 0 2317.0 4919.0 261.0 297.0 10185.0 10569.0 252.0 1272.0 956.0 1007.0 2868.0 3873.0 0 0 g 0 0 0 0 0 0 2991.0 1675.0 114.0 247.0 178.0 106.0 212.0 8678.0 473.0 1158.0 2292.0 2055.0 0 0 t 0 0 0 0 0 0 2221.0 3300.0 10254.0 10323.0 418.0 125.0 10194.0 673.0 9137.0 8122.0 4187.0 3295.0 0 0

MA0149.1_rc_shift2 (EWSR1-FLI1_rc)
; oligos_8nt_mkv2_m23 versus MA0149.1_rc (EWSR1-FLI1_rc); m=6/8; ncol2=18; w=12; offset=-2; strand=R; shift=2; score=0.492733; --CCTTCCTTCCTTCCTTCC ; cor=; Ncor= a 0 0 2.0 3.0 1.0 2.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 c 0 0 97.0 97.0 2.0 0.0 103.0 105.0 0.0 2.0 103.0 104.0 3.0 2.0 102.0 104.0 1.0 1.0 103.0 105.0 g 0 0 3.0 0.0 0.0 3.0 2.0 0.0 0.0 4.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 3.0 5.0 102.0 100.0 0.0 0.0 105.0 99.0 0.0 0.0 102.0 103.0 2.0 1.0 104.0 104.0 2.0 0.0

MA0528.2_rc_shift7 (ZNF263_rc)
; oligos_8nt_mkv2_m23 versus MA0528.2_rc (ZNF263_rc); m=7/8; ncol2=12; w=9; offset=3; strand=R; shift=7; score=0.467449; -------csTCCTCCCcsc- ; cor=; Ncor= a 0 0 0 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 0 c 0 0 0 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 0 g 0 0 0 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 0 t 0 0 0 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0 0

MA0080.5_rc_shift0 (SPI1_rc)
; oligos_8nt_mkv2_m23 versus MA0080.5_rc (SPI1_rc); m=8/8; ncol2=20; w=12; offset=-4; strand=R; shift=0; score=0.453795; wyttTCACTTCCTCTttyyy ; cor=; Ncor= a 37146.0 32717.0 27628.0 21682.0 10315.0 5993.0 108324.0 2191.0 3215.0 1280.0 1287.0 1702.0 4147.0 6119.0 17071.0 13450.0 17055.0 21525.0 29424.0 30010.0 c 28335.0 34829.0 29188.0 30577.0 20647.0 103485.0 7231.0 109802.0 1308.0 1407.0 127639.0 125703.0 12544.0 100825.0 13479.0 25580.0 25893.0 37341.0 34277.0 38405.0 g 24884.0 26246.0 16927.0 20113.0 11316.0 12697.0 3717.0 9931.0 792.0 1339.0 954.0 568.0 3425.0 10958.0 2914.0 12269.0 11424.0 20183.0 21262.0 22587.0 t 42838.0 39411.0 59460.0 60831.0 90925.0 11028.0 13931.0 11279.0 127888.0 129177.0 3323.0 5230.0 113087.0 15301.0 99739.0 81904.0 78831.0 54154.0 48240.0 42201.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m13_shift0 ; 21 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m13_shift0 (oligos_8nt_mkv2_m13oligos_8nt_mkv2_m13)
; oligos_8nt_mkv2_m13 (oligos_8nt_mkv2_m13oligos_8nt_mkv2_m13); m=0 (reference); ncol1=17; shift=0; ncol=17; wdgCAGCAGCTGTTCwv ; Alignment reference a 6 5 2 2 18 1 0 18 0 0 0 0 1 0 1 6 6 c 4 2 2 14 0 1 19 0 0 18 0 0 2 2 13 4 6 g 4 7 12 1 0 17 0 0 19 1 0 19 0 3 4 2 7 t 5 5 3 2 1 0 0 1 0 0 19 0 16 14 1 7 0

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_8nt_mkv2_m13 versus MA0832.1_rc (Tcf21_rc); m=1/20; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.684624; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift2 (FERD3L)
; oligos_8nt_mkv2_m13 versus MA1485.1 (FERD3L); m=2/20; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.61833; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_shift3 (MYOG)
; oligos_8nt_mkv2_m13 versus MA0500.2 (MYOG); m=3/20; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.604748; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA0499.2_shift3 (MYOD1)
; oligos_8nt_mkv2_m13 versus MA0499.2 (MYOD1); m=4/20; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.590479; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_8nt_mkv2_m13 versus MA0521.1_rc (Tcf12_rc); m=5/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.57774; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_8nt_mkv2_m13 versus MA1641.1_rc (MYF5_rc); m=6/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.573353; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv2_m13 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/20; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.569313; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_8nt_mkv2_m13 versus MA0816.1_rc (Ascl2_rc); m=8/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.551144; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1655.1_rc_shift5 (ZNF341_rc)
; oligos_8nt_mkv2_m13 versus MA1655.1_rc (ZNF341_rc); m=9/20; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.540053; -----stgGCTGTTCyc ; cor=; Ncor= a 0 0 0 0 0 3536.0 4320.0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 1442.0 2599.0 4408.0 c 0 0 0 0 0 5691.0 4672.0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 13739.0 8832.0 5798.0 g 0 0 0 0 0 5745.0 4431.0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 2043.0 2180.0 4256.0 t 0 0 0 0 0 3756.0 5305.0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0 1504.0 5117.0 4266.0

MA0091.1_rc_shift4 (TAL1::TCF3_rc)
; oligos_8nt_mkv2_m13 versus MA0091.1_rc (TAL1::TCF3_rc); m=10/20; ncol2=12; w=12; offset=4; strand=R; shift=4; score=0.535417; ----AmCAKMTGkTck- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_8nt_mkv2_m13 versus MA0665.1_rc (MSC_rc); m=11/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.524897; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_8nt_mkv2_m13 versus MA0691.1_rc (TFAP4_rc); m=12/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.519894; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_8nt_mkv2_m13 versus MA1472.1 (BHLHA15(var.2)); m=13/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.517964; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_8nt_mkv2_m13 versus MA1467.1 (ATOH1(var.2)); m=14/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.497219; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_8nt_mkv2_m13 versus MA0667.1 (MYF6); m=15/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.493833; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_8nt_mkv2_m13 versus MA1100.2 (ASCL1); m=16/20; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.493767; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv2_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=17/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.487562; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_8nt_mkv2_m13 versus MA0048.2_rc (NHLH1_rc); m=18/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.483091; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_8nt_mkv2_m13 versus MA1648.1_rc (TCF12(var.2)_rc); m=19/20; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.458238; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0820.1_rc_shift4 (FIGLA_rc)
; oligos_8nt_mkv2_m13 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.440281; ----wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m12_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m12_shift2 (dyads_m12dyads_m12)
; dyads_m12 (dyads_m12dyads_m12); m=0 (reference); ncol1=14; shift=2; ncol=16; --vssCCSCGCSGGss ; Alignment reference a 0 0 3 0 1 1 0 0 0 0 0 0 0 1 1 1 c 0 0 3 5 6 9 9 8 11 0 10 8 1 2 3 6 g 0 0 3 4 4 1 2 3 0 11 1 3 10 8 7 4 t 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0

MA0751.1_shift1 (ZIC4)
; dyads_m12 versus MA0751.1 (ZIC4); m=1/5; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.683894; -krCCCCCyGykGyGh ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0

MA0697.1_shift1 (ZIC3)
; dyads_m12 versus MA0697.1 (ZIC3); m=2/5; ncol2=15; w=14; offset=-1; strand=D; shift=1; score=0.681908; -gACCCCCYGCtGyGh ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0

MA1584.1_shift0 (ZIC5)
; dyads_m12 versus MA1584.1 (ZIC5); m=3/5; ncol2=16; w=14; offset=-2; strand=D; shift=0; score=0.645662; mgACCCCCCGCtGyGm ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0

MA0696.1_shift1 (ZIC1)
; dyads_m12 versus MA0696.1 (ZIC1); m=4/5; ncol2=14; w=13; offset=-1; strand=D; shift=1; score=0.617985; -gACCCCCyGCTGyG- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0

MA1513.1_shift4 (KLF15)
; dyads_m12 versus MA1513.1 (KLF15); m=5/5; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.576117; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m6_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m6_shift0 (oligos_7nt_mkv2_m6oligos_7nt_mkv2_m6)
; oligos_7nt_mkv2_m6 (oligos_7nt_mkv2_m6oligos_7nt_mkv2_m6); m=0 (reference); ncol1=11; shift=0; ncol=11; msTGAAAAAyr ; Alignment reference a 78 23 0 1 138 138 138 124 139 6 38 c 58 59 0 0 0 0 0 0 0 59 4 g 1 41 0 138 1 1 0 0 0 16 93 t 2 16 139 0 0 0 1 15 0 58 4

MA0606.1_rc_shift0 (NFAT5_rc)
; oligos_7nt_mkv2_m6 versus MA0606.1_rc (NFAT5_rc); m=1/2; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.671421; wrTGGAAAat- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0

MA0152.1_rc_shift2 (NFATC2_rc)
; oligos_7nt_mkv2_m6 versus MA0152.1_rc (NFATC2_rc); m=2/2; ncol2=7; w=7; offset=2; strand=R; shift=2; score=0.486673; --TGGAAAA-- ; cor=; Ncor= a 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 c 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 g 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 t 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m9_shift6 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m9_shift6 (oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9)
; oligos_6nt_mkv2_m9 (oligos_6nt_mkv2_m9oligos_6nt_mkv2_m9); m=0 (reference); ncol1=10; shift=6; ncol=16; ------rrAGGTGGaa ; Alignment reference a 0 0 0 0 0 0 24 16 41 0 0 0 0 0 17 25 c 0 0 0 0 0 0 4 10 0 0 0 0 0 0 10 5 g 0 0 0 0 0 0 12 11 0 41 41 0 41 41 7 5 t 0 0 0 0 0 0 1 4 0 0 0 41 0 0 7 6

MA0820.1_rc_shift5 (FIGLA_rc)
; oligos_6nt_mkv2_m9 versus MA0820.1_rc (FIGLA_rc); m=1/30; ncol2=10; w=9; offset=-1; strand=R; shift=5; score=0.668277; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0

MA1559.1_shift5 (SNAI3)
; oligos_6nt_mkv2_m9 versus MA1559.1 (SNAI3); m=2/30; ncol2=10; w=9; offset=-1; strand=D; shift=5; score=0.651668; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0

MA1558.1_shift5 (SNAI1)
; oligos_6nt_mkv2_m9 versus MA1558.1 (SNAI1); m=3/30; ncol2=10; w=9; offset=-1; strand=D; shift=5; score=0.649624; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0

MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)
; oligos_6nt_mkv2_m9 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=4/30; ncol2=12; w=10; offset=-2; strand=R; shift=4; score=0.620563; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0

MA1565.1_shift6 (TBX18)
; oligos_6nt_mkv2_m9 versus MA1565.1 (TBX18); m=5/30; ncol2=12; w=10; offset=0; strand=D; shift=6; score=0.619108; ------rrAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 216.0 343.0 778.0 73.0 14.0 7.0 21.0 100.0 52.0 778.0 c 0 0 0 0 0 0 86.0 103.0 62.0 57.0 0.0 80.0 6.0 98.0 161.0 1.0 g 0 0 0 0 0 0 316.0 435.0 159.0 778.0 778.0 0.0 778.0 109.0 778.0 5.0 t 0 0 0 0 0 0 160.0 148.0 59.0 47.0 0.0 778.0 2.0 778.0 32.0 34.0

MA0807.1_shift8 (TBX5)
; oligos_6nt_mkv2_m9 versus MA0807.1 (TBX5); m=6/30; ncol2=8; w=8; offset=2; strand=D; shift=8; score=0.615418; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0

MA0103.3_rc_shift4 (ZEB1_rc)
; oligos_6nt_mkv2_m9 versus MA0103.3_rc (ZEB1_rc); m=7/30; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=0.602155; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0

MA1567.1_shift7 (TBX6)
; oligos_6nt_mkv2_m9 versus MA1567.1 (TBX6); m=8/30; ncol2=10; w=9; offset=1; strand=D; shift=7; score=0.60114; -------ragGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0

MA0806.1_shift8 (TBX4)
; oligos_6nt_mkv2_m9 versus MA0806.1 (TBX4); m=9/30; ncol2=8; w=8; offset=2; strand=D; shift=8; score=0.600945; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0

MA0745.2_rc_shift3 (SNAI2_rc)
; oligos_6nt_mkv2_m9 versus MA0745.2_rc (SNAI2_rc); m=10/30; ncol2=13; w=10; offset=-3; strand=R; shift=3; score=0.59573; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0

MA0803.1_shift8 (TBX15)
; oligos_6nt_mkv2_m9 versus MA0803.1 (TBX15); m=11/30; ncol2=8; w=8; offset=2; strand=D; shift=8; score=0.583265; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0

MA0690.1_shift7 (TBX21)
; oligos_6nt_mkv2_m9 versus MA0690.1 (TBX21); m=12/30; ncol2=10; w=9; offset=1; strand=D; shift=7; score=0.578696; -------aAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 2322.0 4395.0 612.0 2.0 6.0 1.0 185.0 80.0 4395.0 c 0 0 0 0 0 0 0 263.0 30.0 239.0 17.0 180.0 0.0 331.0 126.0 0.0 g 0 0 0 0 0 0 0 937.0 359.0 4395.0 4395.0 16.0 4395.0 34.0 4395.0 38.0 t 0 0 0 0 0 0 0 872.0 146.0 398.0 33.0 4395.0 2.0 4395.0 364.0 0.0

MA0499.2_rc_shift3 (MYOD1_rc)
; oligos_6nt_mkv2_m9 versus MA0499.2_rc (MYOD1_rc); m=13/30; ncol2=13; w=10; offset=-3; strand=R; shift=3; score=0.574687; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0

MA1566.1_shift7 (TBX3)
; oligos_6nt_mkv2_m9 versus MA1566.1 (TBX3); m=14/30; ncol2=10; w=9; offset=1; strand=D; shift=7; score=0.57307; -------ragGTGTsa ; cor=; Ncor= a 0 0 0 0 0 0 0 644.0 2544.0 427.0 6.0 16.0 0.0 115.0 170.0 2544.0 c 0 0 0 0 0 0 0 399.0 481.0 862.0 45.0 735.0 0.0 634.0 1471.0 410.0 g 0 0 0 0 0 0 0 1003.0 1207.0 2544.0 2544.0 0.0 2544.0 155.0 2544.0 947.0 t 0 0 0 0 0 0 0 497.0 760.0 302.0 0.0 2544.0 0.0 2544.0 1112.0 484.0

MA1648.1_rc_shift4 (TCF12(var.2)_rc)
; oligos_6nt_mkv2_m9 versus MA1648.1_rc (TCF12(var.2)_rc); m=15/30; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=0.569082; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0

MA0522.3_rc_shift4 (TCF3_rc)
; oligos_6nt_mkv2_m9 versus MA0522.3_rc (TCF3_rc); m=16/30; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=0.568943; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0

MA0805.1_shift8 (TBX1)
; oligos_6nt_mkv2_m9 versus MA0805.1 (TBX1); m=17/30; ncol2=8; w=8; offset=2; strand=D; shift=8; score=0.567628; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0

MA0830.2_rc_shift3 (TCF4_rc)
; oligos_6nt_mkv2_m9 versus MA0830.2_rc (TCF4_rc); m=18/30; ncol2=13; w=10; offset=-3; strand=R; shift=3; score=0.562427; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0

MA1631.1_rc_shift3 (ASCL1(var.2)_rc)
; oligos_6nt_mkv2_m9 versus MA1631.1_rc (ASCL1(var.2)_rc); m=19/30; ncol2=13; w=10; offset=-3; strand=R; shift=3; score=0.559186; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0

MA1109.1_shift4 (NEUROD1)
; oligos_6nt_mkv2_m9 versus MA1109.1 (NEUROD1); m=20/30; ncol2=13; w=10; offset=-2; strand=D; shift=4; score=0.546984; ----graCAGATGGyr ; cor=; Ncor= a 0 0 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 c 0 0 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 g 0 0 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 t 0 0 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0

MA0688.1_shift7 (TBX2)
; oligos_6nt_mkv2_m9 versus MA0688.1 (TBX2); m=21/30; ncol2=11; w=9; offset=1; strand=D; shift=7; score=0.545943; -------wAGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 1258.0 3181.0 602.0 9.0 0.0 26.0 307.0 310.0 3181.0 c 0 0 0 0 0 0 0 402.0 59.0 519.0 36.0 329.0 0.0 392.0 1289.0 26.0 g 0 0 0 0 0 0 0 717.0 716.0 3181.0 3181.0 21.0 3181.0 27.0 3181.0 125.0 t 0 0 0 0 0 0 0 804.0 442.0 353.0 14.0 3181.0 12.0 3181.0 1409.0 120.0

MA1621.1_rc_shift3 (Rbpjl_rc)
; oligos_6nt_mkv2_m9 versus MA1621.1_rc (Rbpjl_rc); m=22/30; ncol2=14; w=10; offset=-3; strand=R; shift=3; score=0.540536; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0

MA0130.1_rc_shift10 (ZNF354C_rc)
; oligos_6nt_mkv2_m9 versus MA0130.1_rc (ZNF354C_rc); m=23/30; ncol2=6; w=6; offset=4; strand=R; shift=10; score=0.538134; ----------GTGGAk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 11.0 0.0 c 0 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 3.0 g 0 0 0 0 0 0 0 0 0 0 15.0 0.0 16.0 16.0 2.0 6.0 t 0 0 0 0 0 0 0 0 0 0 0.0 16.0 0.0 0.0 3.0 7.0

MA0689.1_shift7 (TBX20)
; oligos_6nt_mkv2_m9 versus MA0689.1 (TBX20); m=24/30; ncol2=11; w=9; offset=1; strand=D; shift=7; score=0.525152; -------wAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 197.0 572.0 50.0 0.0 0.0 0.0 8.0 48.0 572.0 c 0 0 0 0 0 0 0 4.0 23.0 34.0 0.0 0.0 1.0 1.0 10.0 1.0 g 0 0 0 0 0 0 0 121.0 54.0 572.0 572.0 10.0 572.0 11.0 572.0 6.0 t 0 0 0 0 0 0 0 250.0 24.0 26.0 40.0 572.0 4.0 572.0 82.0 10.0

MA0743.2_shift0 (SCRT1)
; oligos_6nt_mkv2_m9 versus MA0743.2 (SCRT1); m=25/30; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=0.503465; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0

MA0744.2_shift0 (SCRT2)
; oligos_6nt_mkv2_m9 versus MA0744.2 (SCRT2); m=26/30; ncol2=16; w=10; offset=-6; strand=D; shift=0; score=0.487417; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

MA0802.1_shift8 (TBR1)
; oligos_6nt_mkv2_m9 versus MA0802.1 (TBR1); m=27/30; ncol2=10; w=8; offset=2; strand=D; shift=8; score=0.480258; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34509.0 6880.0 70.0 39.0 0.0 2386.0 1175.0 34509.0 c 0 0 0 0 0 0 0 0 359.0 3255.0 254.0 1759.0 6.0 4742.0 2551.0 90.0 g 0 0 0 0 0 0 0 0 3329.0 34509.0 34509.0 88.0 34509.0 157.0 34509.0 584.0 t 0 0 0 0 0 0 0 0 1433.0 4480.0 213.0 34509.0 4.0 34509.0 7001.0 205.0

MA1601.1_shift8 (ZNF75D)
; oligos_6nt_mkv2_m9 versus MA1601.1 (ZNF75D); m=28/30; ncol2=10; w=8; offset=2; strand=D; shift=8; score=0.472846; --------rtGTGGGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2111.0 1057.0 2.0 10.0 26.0 46.0 24.0 6706.0 c 0 0 0 0 0 0 0 0 1573.0 715.0 0.0 59.0 18.0 44.0 29.0 20.0 g 0 0 0 0 0 0 0 0 1850.0 1468.0 6757.0 4.0 6710.0 6545.0 6678.0 15.0 t 0 0 0 0 0 0 0 0 1225.0 3519.0 0.0 6686.0 5.0 124.0 28.0 18.0

MA0800.1_shift7 (EOMES)
; oligos_6nt_mkv2_m9 versus MA0800.1 (EOMES); m=29/30; ncol2=13; w=9; offset=1; strand=D; shift=7; score=0.453135; -------aAGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 4526.0 9832.0 1775.0 23.0 19.0 9.0 495.0 210.0 9832.0 c 0 0 0 0 0 0 0 911.0 158.0 1004.0 92.0 600.0 8.0 1540.0 550.0 28.0 g 0 0 0 0 0 0 0 2274.0 1259.0 9832.0 9832.0 50.0 9832.0 98.0 9832.0 99.0 t 0 0 0 0 0 0 0 2122.0 653.0 1305.0 94.0 9832.0 3.0 9832.0 980.0 24.0

MA0513.1_rc_shift8 (SMAD2::SMAD3::SMAD4_rc)
; oligos_6nt_mkv2_m9 versus MA0513.1_rc (SMAD2::SMAD3::SMAD4_rc); m=30/30; ncol2=13; w=8; offset=2; strand=R; shift=8; score=0.40676; --------agGTGmsA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 540.0 152.0 0.0 97.0 0.0 283.0 23.0 899.0 c 0 0 0 0 0 0 0 0 35.0 47.0 133.0 18.0 3.0 280.0 539.0 0.0 g 0 0 0 0 0 0 0 0 214.0 583.0 736.0 19.0 896.0 125.0 231.0 0.0 t 0 0 0 0 0 0 0 0 110.0 117.0 30.0 765.0 0.0 211.0 106.0 0.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m8_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m8_shift3 (oligos_7nt_mkv2_m8oligos_7nt_mkv2_m8)
; oligos_7nt_mkv2_m8 (oligos_7nt_mkv2_m8oligos_7nt_mkv2_m8); m=0 (reference); ncol1=11; shift=3; ncol=14; ---smCCCTGCCwc ; Alignment reference a 0 0 0 4 10 0 0 0 0 2 0 0 9 6 c 0 0 0 20 15 34 33 34 3 0 34 34 4 16 g 0 0 0 9 5 0 1 0 0 32 0 0 5 6 t 0 0 0 1 4 0 0 0 31 0 0 0 16 6

MA1653.1_shift2 (ZNF148)
; oligos_7nt_mkv2_m8 versus MA1653.1 (ZNF148); m=1/6; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.668258; --ysCCCCTCCCcc ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0

MA1522.1_shift2 (MAZ)
; oligos_7nt_mkv2_m8 versus MA1522.1 (MAZ); m=2/6; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.613611; --ssCCCCTCCcc- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0

MA0155.1_rc_shift1 (INSM1_rc)
; oligos_7nt_mkv2_m8 versus MA0155.1_rc (INSM1_rc); m=3/6; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.573876; -ygmCCCCwkrCA- ; cor=; Ncor= a 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 19.0 0 c 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 4.0 0 g 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 0.0 0 t 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0 1.0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; oligos_7nt_mkv2_m8 versus MA1102.2_rc (CTCFL_rc); m=4/6; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.512438; scGCCCCCTGsy-- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0

MA0057.1_rc_shift1 (MZF1(var.2)_rc)
; oligos_7nt_mkv2_m8 versus MA0057.1_rc (MZF1(var.2)_rc); m=5/6; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.434764; -yymCCCMTmv--- ; cor=; Ncor= a 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 c 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 g 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 t 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0

MA0597.1_shift7 (THAP1)
; oligos_7nt_mkv2_m8 versus MA0597.1 (THAP1); m=6/6; ncol2=9; w=7; offset=4; strand=D; shift=7; score=0.422522; -------ytGCCMk ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0

One-to-n matrix alignment; reference matrix: dyads_m17_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m17_shift1 (dyads_m17dyads_m17)
; dyads_m17 (dyads_m17dyads_m17); m=0 (reference); ncol1=10; shift=1; ncol=14; -sdGCCACCwm--- ; Alignment reference a 0 4 8 0 0 0 26 0 0 10 7 0 0 0 c 0 11 1 0 27 27 0 27 27 5 11 0 0 0 g 0 10 9 27 0 0 1 0 0 1 5 0 0 0 t 0 2 9 0 0 0 0 0 0 11 4 0 0 0

MA0739.1_shift1 (Hic1)
; dyads_m17 versus MA0739.1 (Hic1); m=1/5; ncol2=9; w=9; offset=0; strand=D; shift=1; score=0.665596; -rTGCCAaCc---- ; cor=; Ncor= a 0 6337.0 62.0 950.0 50.0 88.0 9008.0 6140.0 1220.0 1610.0 0 0 0 0 c 0 719.0 422.0 588.0 11007.0 11007.0 1999.0 1986.0 11007.0 4822.0 0 0 0 0 g 0 4670.0 73.0 11007.0 121.0 31.0 3.0 2267.0 1629.0 1884.0 0 0 0 0 t 0 666.0 11007.0 183.0 0.0 68.0 317.0 614.0 1488.0 2692.0 0 0 0 0

MA0695.1_shift0 (ZBTB7C)
; dyads_m17 versus MA0695.1 (ZBTB7C); m=2/5; ncol2=12; w=10; offset=-1; strand=D; shift=0; score=0.594156; rcgACCACCgam-- ; cor=; Ncor= a 272.0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 253.0 1018.0 333.0 0 0 c 118.0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 138.0 444.0 315.0 0 0 g 463.0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 527.0 251.0 196.0 0 0 t 164.0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 100.0 419.0 174.0 0 0

MA1102.2_rc_shift1 (CTCFL_rc)
; dyads_m17 versus MA1102.2_rc (CTCFL_rc); m=3/5; ncol2=12; w=10; offset=0; strand=R; shift=1; score=0.593472; -scGCCCCCTGsy- ; cor=; Ncor= a 0 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 c 0 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 g 0 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 t 0 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0

MA0839.1_shift1 (CREB3L1)
; dyads_m17 versus MA0839.1 (CREB3L1); m=4/5; ncol2=14; w=10; offset=0; strand=D; shift=1; score=0.502053; -rTGCCACGTCAyC ; cor=; Ncor= a 0 247.0 38.0 20.0 61.0 3.0 671.0 0.0 21.0 7.0 121.0 671.0 60.0 76.0 c 0 143.0 159.0 3.0 671.0 671.0 0.0 671.0 3.0 0.0 671.0 33.0 186.0 671.0 g 0 181.0 29.0 671.0 0.0 0.0 3.0 3.0 671.0 3.0 40.0 72.0 125.0 64.0 t 0 100.0 671.0 18.0 2.0 5.0 0.0 0.0 0.0 671.0 10.0 39.0 300.0 79.0

MA0130.1_shift2 (ZNF354C)
; dyads_m17 versus MA0130.1 (ZNF354C); m=5/5; ncol2=6; w=6; offset=1; strand=D; shift=2; score=0.446956; --mTCCAC------ ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift5 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift5 (oligos_7nt_mkv2_m5oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5 (oligos_7nt_mkv2_m5oligos_7nt_mkv2_m5); m=0 (reference); ncol1=11; shift=5; ncol=16; -----AmACTGAAAAw ; Alignment reference a 0 0 0 0 0 80 55 98 0 0 0 98 98 98 90 60 c 0 0 0 0 0 0 40 0 98 0 0 0 0 0 4 2 g 0 0 0 0 0 10 0 0 0 0 98 0 0 0 2 0 t 0 0 0 0 0 8 3 0 0 98 0 0 0 0 2 36

MA1623.1_shift3 (Stat2)
; oligos_7nt_mkv2_m5 versus MA1623.1 (Stat2); m=1/10; ncol2=13; w=11; offset=-2; strand=D; shift=3; score=0.661438; ---rgAAACAGAAAsw ; cor=; Ncor= a 0 0 0 1605.0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 740.0 1262.0 c 0 0 0 538.0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 1502.0 758.0 g 0 0 0 1125.0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 1180.0 591.0 t 0 0 0 691.0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 537.0 1348.0

MA0772.1_shift2 (IRF7)
; oligos_7nt_mkv2_m5 versus MA0772.1 (IRF7); m=2/10; ncol2=14; w=11; offset=-3; strand=D; shift=2; score=0.594326; --mCGAAAryGAAAvT ; cor=; Ncor= a 0 0 373.0 97.0 36.0 957.0 957.0 957.0 279.0 8.0 30.0 957.0 957.0 957.0 1184.0 160.0 c 0 0 323.0 957.0 67.0 3.0 0.0 2.0 156.0 582.0 3.0 16.0 3.0 10.0 957.0 153.0 g 0 0 71.0 50.0 957.0 1.0 0.0 1.0 505.0 2.0 957.0 4.0 3.0 7.0 1235.0 31.0 t 0 0 191.0 46.0 90.0 0.0 1.0 1.0 17.0 375.0 7.0 5.0 1.0 41.0 301.0 804.0

MA0652.1_shift2 (IRF8)
; oligos_7nt_mkv2_m5 versus MA0652.1 (IRF8); m=3/10; ncol2=14; w=11; offset=-3; strand=D; shift=2; score=0.570298; --yCGAAACCGAAACT ; cor=; Ncor= a 0 0 1309.0 63.0 3.0 5878.0 5878.0 5878.0 54.0 6.0 0.0 5878.0 5878.0 5878.0 11.0 321.0 c 0 0 1996.0 5878.0 0.0 2.0 0.0 0.0 5878.0 5878.0 0.0 0.0 0.0 5.0 5878.0 1454.0 g 0 0 571.0 19.0 5878.0 0.0 0.0 0.0 580.0 0.0 5878.0 3.0 2.0 0.0 1061.0 8.0 t 0 0 2002.0 884.0 2.0 0.0 33.0 3.0 6.0 1228.0 0.0 0.0 68.0 0.0 15.0 5878.0

MA1420.1_shift2 (IRF5)
; oligos_7nt_mkv2_m5 versus MA1420.1 (IRF5); m=4/10; ncol2=14; w=11; offset=-3; strand=D; shift=2; score=0.555499; --cCGAAACCGAAmCy ; cor=; Ncor= a 0 0 35.0 10.0 15.0 223.0 224.0 225.0 1.0 0.0 105.0 224.0 206.0 223.0 29.0 22.0 c 0 0 169.0 177.0 3.0 2.0 5.0 0.0 180.0 182.0 30.0 11.0 6.0 84.0 171.0 80.0 g 0 0 22.0 17.0 357.0 6.0 4.0 5.0 0.0 0.0 365.0 7.0 25.0 12.0 25.0 23.0 t 0 0 42.0 38.0 21.0 7.0 44.0 1.0 4.0 37.0 8.0 1.0 40.0 15.0 22.0 157.0

MA1155.1_shift0 (ZSCAN4)
; oligos_7nt_mkv2_m5 versus MA1155.1 (ZSCAN4); m=5/10; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.548818; tGCACACmCTGaAAa- ; cor=; Ncor= a 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 1000.0 0 c 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 200.0 0 g 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 365.0 0 t 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0 229.0 0

MA0869.1_rc_shift4 (Sox11_rc)
; oligos_7nt_mkv2_m5 versus MA0869.1_rc (Sox11_rc); m=6/10; ncol2=15; w=11; offset=-1; strand=R; shift=4; score=0.535813; ----AACACTGmAATT ; cor=; Ncor= a 0 0 0 0 305.0 305.0 0.0 305.0 99.0 0.0 1.0 425.0 305.0 305.0 0.0 0.0 c 0 0 0 0 5.0 0.0 305.0 2.0 305.0 0.0 0.0 305.0 0.0 0.0 0.0 0.0 g 0 0 0 0 14.0 0.0 0.0 0.0 0.0 0.0 305.0 39.0 1.0 0.0 0.0 0.0 t 0 0 0 0 1.0 0.0 0.0 0.0 0.0 305.0 0.0 41.0 0.0 0.0 305.0 305.0

MA0653.1_shift1 (IRF9)
; oligos_7nt_mkv2_m5 versus MA0653.1 (IRF9); m=7/10; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.530397; -AwCGAAACCGAAACy ; cor=; Ncor= a 0 3467.0 2392.0 49.0 43.0 3467.0 3467.0 3467.0 43.0 16.0 2.0 3467.0 3467.0 3467.0 4.0 99.0 c 0 52.0 498.0 3467.0 3.0 5.0 0.0 2.0 3467.0 3467.0 0.0 2.0 1.0 0.0 3467.0 1129.0 g 0 43.0 204.0 33.0 3467.0 1.0 0.0 0.0 197.0 0.0 3467.0 0.0 0.0 0.0 239.0 7.0 t 0 110.0 1076.0 118.0 5.0 0.0 3.0 1.0 9.0 831.0 1.0 0.0 21.0 3.0 2.0 2338.0

MA0517.1_rc_shift3 (STAT1::STAT2_rc)
; oligos_7nt_mkv2_m5 versus MA0517.1_rc (STAT1::STAT2_rc); m=8/10; ncol2=15; w=11; offset=-2; strand=R; shift=3; score=0.523728; ---rGRAAmyGAAACT ; cor=; Ncor= a 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 c 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 g 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 t 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0

MA1419.1_shift2 (IRF4)
; oligos_7nt_mkv2_m5 versus MA1419.1 (IRF4); m=9/10; ncol2=15; w=11; offset=-3; strand=D; shift=2; score=0.515937; --yCGAAACCGAAACy ; cor=; Ncor= a 0 0 10448.0 364.0 350.0 45331.0 45331.0 45331.0 187.0 27.0 57.0 45331.0 45331.0 45331.0 829.0 1377.0 c 0 0 18876.0 45331.0 66.0 124.0 8.0 6.0 45331.0 45331.0 6.0 46.0 11.0 15.0 45331.0 17589.0 g 0 0 2105.0 87.0 45331.0 91.0 25.0 4.0 593.0 4.0 45331.0 7.0 23.0 4.0 4251.0 253.0 t 0 0 13901.0 5937.0 31.0 112.0 444.0 8.0 497.0 3801.0 3.0 5.0 1002.0 13.0 80.0 27742.0

MA0152.1_rc_shift9 (NFATC2_rc)
; oligos_7nt_mkv2_m5 versus MA0152.1_rc (NFATC2_rc); m=10/10; ncol2=7; w=7; offset=4; strand=R; shift=9; score=0.474043; ---------TGGAAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 g 0 0 0 0 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 t 0 0 0 0 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift4 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift4 (oligos_6nt_mkv2_m5oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5 (oligos_6nt_mkv2_m5oligos_6nt_mkv2_m5); m=0 (reference); ncol1=10; shift=4; ncol=16; ----ssCCCCGCsg-- ; Alignment reference a 0 0 0 0 0 3 0 0 0 0 0 0 2 1 0 0 c 0 0 0 0 10 7 23 21 23 24 0 25 8 6 0 0 g 0 0 0 0 11 9 2 4 2 1 25 0 9 15 0 0 t 0 0 0 0 4 6 0 0 0 0 0 0 6 3 0 0

MA1122.1_rc_shift3 (TFDP1_rc)
; oligos_6nt_mkv2_m5 versus MA1122.1_rc (TFDP1_rc); m=1/11; ncol2=11; w=10; offset=-1; strand=R; shift=3; score=0.659509; ---ssTTCCCGCsc-- ; cor=; Ncor= a 0 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 c 0 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 g 0 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 t 0 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0

MA1513.1_shift5 (KLF15)
; oligos_6nt_mkv2_m5 versus MA1513.1 (KLF15); m=2/11; ncol2=11; w=9; offset=1; strand=D; shift=5; score=0.614917; -----scCCCGCCCcs ; cor=; Ncor= a 0 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 c 0 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 g 0 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 t 0 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0

MA0599.1_shift5 (KLF5)
; oligos_6nt_mkv2_m5 versus MA0599.1 (KLF5); m=3/11; ncol2=10; w=9; offset=1; strand=D; shift=5; score=0.593891; -----gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0

MA0696.1_shift2 (ZIC1)
; oligos_6nt_mkv2_m5 versus MA0696.1 (ZIC1); m=4/11; ncol2=14; w=10; offset=-2; strand=D; shift=2; score=0.564998; --gACCCCCyGCTGyG ; cor=; Ncor= a 0 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 c 0 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 g 0 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 t 0 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0

MA0736.1_shift2 (GLIS2)
; oligos_6nt_mkv2_m5 versus MA0736.1 (GLIS2); m=5/11; ncol2=14; w=10; offset=-2; strand=D; shift=2; score=0.551023; --kACCCCCCrCramG ; cor=; Ncor= a 0 0 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 407.0 15.0 c 0 0 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 265.0 187.0 g 0 0 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 112.0 1051.0 t 0 0 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0 197.0 63.0

MA0697.1_shift2 (ZIC3)
; oligos_6nt_mkv2_m5 versus MA0697.1 (ZIC3); m=6/11; ncol2=15; w=10; offset=-2; strand=D; shift=2; score=0.541901; --gACCCCCYGCtGyG ; cor=; Ncor= a 0 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 c 0 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 g 0 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 t 0 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0

MA0751.1_shift2 (ZIC4)
; oligos_6nt_mkv2_m5 versus MA0751.1 (ZIC4); m=7/11; ncol2=15; w=10; offset=-2; strand=D; shift=2; score=0.526796; --krCCCCCyGykGyG ; cor=; Ncor= a 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 c 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 g 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 t 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0

MA1584.1_shift1 (ZIC5)
; oligos_6nt_mkv2_m5 versus MA1584.1 (ZIC5); m=8/11; ncol2=16; w=10; offset=-3; strand=D; shift=1; score=0.509132; -mgACCCCCCGCtGyG ; cor=; Ncor= a 0 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 c 0 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 g 0 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 t 0 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0

MA0162.4_shift0 (EGR1)
; oligos_6nt_mkv2_m5 versus MA0162.4 (EGR1); m=9/11; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.501472; ccmCGCCCACgCms-- ; cor=; Ncor= a 7087.0 3997.0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 8903.0 3809.0 0 0 c 11610.0 14749.0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 10441.0 13686.0 0 0 g 6621.0 7211.0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 6345.0 7852.0 0 0 t 5280.0 4641.0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 4909.0 5251.0 0 0

MA1650.1_shift6 (ZBTB14)
; oligos_6nt_mkv2_m5 versus MA1650.1 (ZBTB14); m=10/11; ncol2=12; w=8; offset=2; strand=D; shift=6; score=0.433305; ------ssCCGCGCAC ; cor=; Ncor= a 0 0 0 0 0 0 570.0 501.0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 c 0 0 0 0 0 0 1779.0 1972.0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 g 0 0 0 0 0 0 1668.0 1555.0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 t 0 0 0 0 0 0 530.0 519.0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0

MA1548.1_shift1 (PLAGL2)
; oligos_6nt_mkv2_m5 versus MA1548.1 (PLAGL2); m=11/11; ncol2=10; w=7; offset=-3; strand=D; shift=1; score=0.402104; -tGGGCCCCCt----- ; cor=; Ncor= a 0 224.0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 210.0 0 0 0 0 0 c 0 224.0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 210.0 0 0 0 0 0 g 0 224.0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 210.0 0 0 0 0 0 t 0 327.0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 369.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m37_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m37_shift4 (dyads_m37dyads_m37)
; dyads_m37 (dyads_m37dyads_m37); m=0 (reference); ncol1=11; shift=4; ncol=17; ----ksrCGyACGsv-- ; Alignment reference a 0 0 0 0 1 1 7 0 0 0 10 0 0 1 3 0 0 c 0 0 0 0 2 4 0 11 0 5 1 11 0 5 3 0 0 g 0 0 0 0 5 4 3 0 11 2 0 0 11 4 4 0 0 t 0 0 0 0 3 2 1 0 0 4 0 0 0 1 1 0 0

MA0131.2_rc_shift4 (HINFP_rc)
; dyads_m37 versus MA0131.2_rc (HINFP_rc); m=1/6; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.657259; ----mcGCGGACGytg- ; cor=; Ncor= a 0 0 0 0 107.0 97.0 12.0 21.0 3.0 0.0 470.0 10.0 7.0 17.0 53.0 100.0 0 c 0 0 0 0 154.0 188.0 15.0 472.0 0.0 13.0 0.0 484.0 97.0 217.0 113.0 106.0 0 g 0 0 0 0 84.0 55.0 395.0 31.0 413.0 404.0 0.0 14.0 388.0 45.0 131.0 340.0 0 t 0 0 0 0 77.0 85.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 276.0 285.0 23.0 0

MA0259.1_rc_shift4 (ARNT::HIF1A_rc)
; dyads_m37 versus MA0259.1_rc (ARNT::HIF1A_rc); m=2/6; ncol2=8; w=8; offset=0; strand=R; shift=4; score=0.51921; ----gCACGTvb----- ; cor=; Ncor= a 0 0 0 0 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 0 0 0 0 0 c 0 0 0 0 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 0 0 0 0 0 g 0 0 0 0 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 0 0 0 0 0 t 0 0 0 0 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0 0 0 0 0 0

MA0006.1_rc_shift9 (Ahr::Arnt_rc)
; dyads_m37 versus MA0006.1_rc (Ahr::Arnt_rc); m=3/6; ncol2=6; w=6; offset=5; strand=R; shift=9; score=0.468433; ---------CACGCr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 11.0 0 0 c 0 0 0 0 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 2.0 0 0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 8.0 0 0 t 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 3.0 0 0

MA0615.1_shift0 (Gmeb1)
; dyads_m37 versus MA0615.1 (Gmeb1); m=4/6; ncol2=17; w=11; offset=-4; strand=D; shift=0; score=0.464158; smkkkkRCGYmmgayrs ; cor=; Ncor= a 17.0 34.0 11.0 13.0 13.0 5.0 71.0 0.0 1.0 0.0 59.0 40.0 21.0 44.0 18.0 27.0 24.0 c 26.0 31.0 23.0 22.0 7.0 4.0 1.0 99.0 0.0 28.0 33.0 40.0 23.0 15.0 26.0 21.0 25.0 g 35.0 15.0 35.0 29.0 40.0 33.0 28.0 0.0 99.0 1.0 4.0 7.0 37.0 18.0 23.0 31.0 27.0 t 22.0 20.0 31.0 36.0 40.0 59.0 0.0 1.0 0.0 71.0 5.0 13.0 19.0 24.0 33.0 20.0 24.0

MA0604.1_shift3 (Atf1)
; dyads_m37 versus MA0604.1 (Atf1); m=5/6; ncol2=8; w=7; offset=-1; strand=D; shift=3; score=0.444684; ---rTGACGTa------ ; cor=; Ncor= a 0 0 0 462.0 24.0 0.0 1000.0 0.0 7.0 90.0 600.0 0 0 0 0 0 0 c 0 0 0 86.0 16.0 22.0 0.0 1000.0 0.0 198.0 138.0 0 0 0 0 0 0 g 0 0 0 387.0 0.0 803.0 0.0 0.0 993.0 0.0 163.0 0 0 0 0 0 0 t 0 0 0 65.0 960.0 175.0 0.0 0.0 0.0 712.0 100.0 0 0 0 0 0 0

MA0004.1_rc_shift9 (Arnt_rc)
; dyads_m37 versus MA0004.1_rc (Arnt_rc); m=6/6; ncol2=6; w=6; offset=5; strand=R; shift=9; score=0.401601; ---------CACGTG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 20.0 0.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0 0 20.0 0.0 20.0 0.0 1.0 0.0 0 0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 20.0 0.0 16.0 0 0 t 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 19.0 4.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m30_shift3 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m30_shift3 (dyads_m30dyads_m30)
; dyads_m30 (dyads_m30dyads_m30); m=0 (reference); ncol1=11; shift=3; ncol=17; ---ymCCCMGCCyr--- ; Alignment reference a 0 0 0 2 4 0 0 0 8 0 0 0 2 3 0 0 0 c 0 0 0 3 3 11 11 11 3 0 11 11 4 2 0 0 0 g 0 0 0 2 2 0 0 0 0 11 0 0 2 4 0 0 0 t 0 0 0 4 2 0 0 0 0 0 0 0 3 2 0 0 0

MA0039.4_shift2 (KLF4)
; dyads_m30 versus MA0039.4 (KLF4); m=1/4; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.656938; --ssCCCCACCChs--- ; cor=; Ncor= a 0 0 12570.0 11487.0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 16264.0 9959.0 0 0 0 c 0 0 17520.0 14038.0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 18249.0 19217.0 0 0 0 g 0 0 14243.0 18473.0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 6292.0 14422.0 0 0 0 t 0 0 11484.0 11819.0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 15012.0 12219.0 0 0 0

MA1513.1_shift4 (KLF15)
; dyads_m30 versus MA1513.1 (KLF15); m=2/4; ncol2=11; w=10; offset=1; strand=D; shift=4; score=0.656888; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0599.1_shift4 (KLF5)
; dyads_m30 versus MA0599.1 (KLF5); m=3/4; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.646609; ----gCCMCrCCCh--- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0 0

MA0516.2_shift0 (SP2)
; dyads_m30 versus MA0516.2 (SP2); m=4/4; ncol2=17; w=11; offset=-3; strand=D; shift=0; score=0.457029; mTAAGyCCCGCCCmCyy ; cor=; Ncor= a 256.0 53.0 613.0 753.0 54.0 34.0 14.0 16.0 4.0 82.0 0.0 5.0 23.0 402.0 22.0 109.0 150.0 c 308.0 171.0 76.0 84.0 127.0 456.0 774.0 786.0 788.0 52.0 795.0 793.0 774.0 390.0 679.0 221.0 203.0 g 123.0 57.0 0.0 33.0 791.0 8.0 1.0 13.0 22.0 780.0 0.0 26.0 0.0 22.0 1.0 0.0 88.0 t 106.0 608.0 180.0 67.0 43.0 327.0 0.0 8.0 12.0 45.0 18.0 7.0 27.0 17.0 101.0 503.0 352.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m1_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m1_shift0 (oligos_8nt_mkv2_m1oligos_8nt_mkv2_m1)
; oligos_8nt_mkv2_m1 (oligos_8nt_mkv2_m1oligos_8nt_mkv2_m1); m=0 (reference); ncol1=17; shift=0; ncol=17; vbdmAGCAGCTGTCmym ; Alignment reference a 3 2 3 3 11 1 0 12 0 0 0 0 1 0 6 1 3 c 4 3 0 8 0 0 12 0 0 11 0 0 0 10 3 4 6 g 3 4 6 1 0 9 0 0 12 1 0 12 0 1 1 2 1 t 2 3 3 0 1 2 0 0 0 0 12 0 11 1 2 5 2

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_8nt_mkv2_m1 versus MA0832.1_rc (Tcf21_rc); m=1/21; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.654137; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA1485.1_shift2 (FERD3L)
; oligos_8nt_mkv2_m1 versus MA1485.1 (FERD3L); m=2/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.644685; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0499.2_shift3 (MYOD1)
; oligos_8nt_mkv2_m1 versus MA0499.2 (MYOD1); m=3/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.628827; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA0500.2_rc_shift3 (MYOG_rc)
; oligos_8nt_mkv2_m1 versus MA0500.2_rc (MYOG_rc); m=4/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.592109; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_8nt_mkv2_m1 versus MA1641.1_rc (MYF5_rc); m=5/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.582135; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv2_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=6/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.575879; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_8nt_mkv2_m1 versus MA0521.1_rc (Tcf12_rc); m=7/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.571681; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA0745.2_shift3 (SNAI2)
; oligos_8nt_mkv2_m1 versus MA0745.2 (SNAI2); m=8/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.546356; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; oligos_8nt_mkv2_m1 versus MA1618.1_rc (Ptf1a_rc); m=9/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.543219; --dmaaCATCTGtkh-- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_8nt_mkv2_m1 versus MA1467.1 (ATOH1(var.2)); m=10/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.529066; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_8nt_mkv2_m1 versus MA0816.1_rc (Ascl2_rc); m=11/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.505722; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_8nt_mkv2_m1 versus MA1472.1 (BHLHA15(var.2)); m=12/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.505657; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_8nt_mkv2_m1 versus MA0665.1_rc (MSC_rc); m=13/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.497067; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_8nt_mkv2_m1 versus MA1100.2 (ASCL1); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.488567; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_8nt_mkv2_m1 versus MA0691.1_rc (TFAP4_rc); m=15/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.486133; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv2_m1 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.482398; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_8nt_mkv2_m1 versus MA0667.1 (MYF6); m=17/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.472772; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_8nt_mkv2_m1 versus MA1648.1_rc (TCF12(var.2)_rc); m=18/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.454903; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_8nt_mkv2_m1 versus MA0048.2_rc (NHLH1_rc); m=19/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.450567; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA0820.1_shift4 (FIGLA)
; oligos_8nt_mkv2_m1 versus MA0820.1 (FIGLA); m=20/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.42304; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

MA0774.1_rc_shift8 (MEIS2_rc)
; oligos_8nt_mkv2_m1 versus MA0774.1_rc (MEIS2_rc); m=21/21; ncol2=8; w=8; offset=8; strand=R; shift=8; score=0.404306; --------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m27_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m27_shift0 (oligos_8nt_mkv2_m27oligos_8nt_mkv2_m27)
; oligos_8nt_mkv2_m27 (oligos_8nt_mkv2_m27oligos_8nt_mkv2_m27); m=0 (reference); ncol1=17; shift=0; ncol=17; vvdCAGCAGCTGTCyyh ; Alignment reference a 7 5 6 3 17 1 0 20 0 0 0 0 0 0 4 3 5 c 5 6 2 14 1 0 20 0 1 20 0 0 1 14 9 8 7 g 5 6 6 2 0 18 0 0 19 0 0 19 0 3 1 3 2 t 3 3 6 1 2 1 0 0 0 0 20 1 19 3 6 6 6

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_8nt_mkv2_m27 versus MA0832.1_rc (Tcf21_rc); m=1/21; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.653623; --ryAACAGCTGTTry- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0

MA0499.2_shift3 (MYOD1)
; oligos_8nt_mkv2_m27 versus MA0499.2 (MYOD1); m=2/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.649561; ---cwgCACCTGTymy- ; cor=; Ncor= a 0 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0

MA1485.1_shift2 (FERD3L)
; oligos_8nt_mkv2_m27 versus MA1485.1 (FERD3L); m=3/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.613864; --GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0

MA0500.2_shift3 (MYOG)
; oligos_8nt_mkv2_m27 versus MA0500.2 (MYOG); m=4/21; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.602199; ---sarCAGCTGyts-- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_8nt_mkv2_m27 versus MA1641.1_rc (MYF5_rc); m=5/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.586044; ---gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0

MA0521.1_rc_shift3 (Tcf12_rc)
; oligos_8nt_mkv2_m27 versus MA0521.1_rc (Tcf12_rc); m=6/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.581898; ---cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0

MA1619.1_rc_shift3 (Ptf1a(var.2)_rc)
; oligos_8nt_mkv2_m27 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=7/21; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.581314; ---rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0

MA1621.1_shift2 (Rbpjl)
; oligos_8nt_mkv2_m27 versus MA1621.1 (Rbpjl); m=8/21; ncol2=14; w=14; offset=2; strand=D; shift=2; score=0.576766; --svmaCACCTGtsyc- ; cor=; Ncor= a 0 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0

MA0745.2_shift3 (SNAI2)
; oligos_8nt_mkv2_m27 versus MA0745.2 (SNAI2); m=9/21; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.563691; ---aygCACCTGTmry- ; cor=; Ncor= a 0 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0

MA1618.1_rc_shift2 (Ptf1a_rc)
; oligos_8nt_mkv2_m27 versus MA1618.1_rc (Ptf1a_rc); m=10/21; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.551259; --dmaaCATCTGtkh-- ; cor=; Ncor= a 0 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0

MA1467.1_shift4 (ATOH1(var.2))
; oligos_8nt_mkv2_m27 versus MA1467.1 (ATOH1(var.2)); m=11/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.519667; ----AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0

MA0816.1_rc_shift4 (Ascl2_rc)
; oligos_8nt_mkv2_m27 versus MA0816.1_rc (Ascl2_rc); m=12/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.516884; ----rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0

MA1472.1_shift4 (BHLHA15(var.2))
; oligos_8nt_mkv2_m27 versus MA1472.1 (BHLHA15(var.2)); m=13/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.508282; ----avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_8nt_mkv2_m27 versus MA1100.2 (ASCL1); m=14/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.496888; ----rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_8nt_mkv2_m27 versus MA0665.1_rc (MSC_rc); m=15/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.494091; ----AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0

MA1635.1_rc_shift4 (BHLHE22(var.2)_rc)
; oligos_8nt_mkv2_m27 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=16/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.490033; ----csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_8nt_mkv2_m27 versus MA0691.1_rc (TFAP4_rc); m=17/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.479407; ----AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0

MA0667.1_shift4 (MYF6)
; oligos_8nt_mkv2_m27 versus MA0667.1 (MYF6); m=18/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.469981; ----AACArCTGTY--- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_8nt_mkv2_m27 versus MA0048.2_rc (NHLH1_rc); m=19/21; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.468704; ----mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_8nt_mkv2_m27 versus MA1648.1_rc (TCF12(var.2)_rc); m=20/21; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.453761; ---srGCAGGTGss--- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0

MA0820.1_shift4 (FIGLA)
; oligos_8nt_mkv2_m27 versus MA0820.1 (FIGLA); m=21/21; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.428992; ----wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m10_shift0 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m10_shift0 (oligos_8nt_mkv2_m10oligos_8nt_mkv2_m10)
; oligos_8nt_mkv2_m10 (oligos_8nt_mkv2_m10oligos_8nt_mkv2_m10); m=0 (reference); ncol1=17; shift=0; ncol=17; rraGACAGCTGCTgyyy ; Alignment reference a 5 6 9 1 16 1 17 0 0 0 0 1 1 1 4 4 2 c 3 3 1 2 0 16 0 0 17 0 0 14 0 2 7 5 6 g 6 5 3 14 1 0 0 16 0 0 17 1 1 10 1 3 3 t 3 3 4 0 0 0 0 1 0 17 0 1 15 4 5 5 6

MA0832.1_shift1 (Tcf21)
; oligos_8nt_mkv2_m10 versus MA0832.1 (Tcf21); m=1/19; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.644746; -ryAACAGCTGTTry-- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; oligos_8nt_mkv2_m10 versus MA0499.2_rc (MYOD1_rc); m=2/19; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.63346; -rkrACAGGTGcwg--- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; oligos_8nt_mkv2_m10 versus MA1485.1_rc (FERD3L_rc); m=3/19; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.608883; -GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; oligos_8nt_mkv2_m10 versus MA0500.2_rc (MYOG_rc); m=4/19; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.596506; --sarCAGCTGyts--- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0

MA1641.1_shift2 (MYF5)
; oligos_8nt_mkv2_m10 versus MA1641.1 (MYF5); m=5/19; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.583836; --gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; oligos_8nt_mkv2_m10 versus MA1619.1 (Ptf1a(var.2)); m=6/19; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.579228; --rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA0521.1_shift3 (Tcf12)
; oligos_8nt_mkv2_m10 versus MA0521.1 (Tcf12); m=7/19; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.576793; ---rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA0745.2_rc_shift1 (SNAI2_rc)
; oligos_8nt_mkv2_m10 versus MA0745.2_rc (SNAI2_rc); m=8/19; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.548228; -rykACAGGTGcrt--- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0

MA1618.1_shift2 (Ptf1a)
; oligos_8nt_mkv2_m10 versus MA1618.1 (Ptf1a); m=9/19; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.546212; --dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m10 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/19; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.525445; ---RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

MA0816.1_shift3 (Ascl2)
; oligos_8nt_mkv2_m10 versus MA0816.1 (Ascl2); m=11/19; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.507079; ---arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m10 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/19; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.506657; ---rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; oligos_8nt_mkv2_m10 versus MA1100.2_rc (ASCL1_rc); m=13/19; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.490966; ---rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0

MA0665.1_shift3 (MSC)
; oligos_8nt_mkv2_m10 versus MA0665.1 (MSC); m=14/19; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.489287; ---AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; oligos_8nt_mkv2_m10 versus MA1635.1 (BHLHE22(var.2)); m=15/19; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.485638; ---csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; oligos_8nt_mkv2_m10 versus MA0691.1 (TFAP4); m=16/19; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.472508; ---AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0

MA0667.1_rc_shift3 (MYF6_rc)
; oligos_8nt_mkv2_m10 versus MA0667.1_rc (MYF6_rc); m=17/19; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.464863; ---RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; oligos_8nt_mkv2_m10 versus MA0048.2 (NHLH1); m=18/19; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.458388; ---cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; oligos_8nt_mkv2_m10 versus MA0820.1_rc (FIGLA_rc); m=19/19; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.417759; ---wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 22 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m2_shift0 (dyads_m2dyads_m2)
; dyads_m2 (dyads_m2dyads_m2); m=0 (reference); ncol1=18; shift=0; ncol=18; krrrACAGCTGCTGtcta ; Alignment reference a 3 6 6 4 11 0 13 0 0 0 0 1 1 0 2 1 3 5 c 1 1 0 1 0 13 0 1 13 0 0 10 0 1 3 7 3 2 g 5 4 4 8 2 0 0 12 0 0 13 0 0 12 0 2 0 3 t 4 2 3 0 0 0 0 0 0 13 0 2 12 0 8 3 7 3

MA0832.1_shift1 (Tcf21)
; dyads_m2 versus MA0832.1 (Tcf21); m=1/21; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.637686; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0

MA0499.2_rc_shift1 (MYOD1_rc)
; dyads_m2 versus MA0499.2_rc (MYOD1_rc); m=2/21; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.581557; -rkrACAGGTGcwg---- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0

MA1485.1_rc_shift1 (FERD3L_rc)
; dyads_m2 versus MA1485.1_rc (FERD3L_rc); m=3/21; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.575183; -GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0

MA0500.2_rc_shift2 (MYOG_rc)
; dyads_m2 versus MA0500.2_rc (MYOG_rc); m=4/21; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.570944; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0

MA1641.1_shift2 (MYF5)
; dyads_m2 versus MA1641.1 (MYF5); m=5/21; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.551711; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0

MA0521.1_shift3 (Tcf12)
; dyads_m2 versus MA0521.1 (Tcf12); m=6/21; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.546617; ---rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0

MA1619.1_shift2 (Ptf1a(var.2))
; dyads_m2 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.546502; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0

MA1618.1_shift2 (Ptf1a)
; dyads_m2 versus MA1618.1 (Ptf1a); m=8/21; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.514266; --dmaCAGATGttkh--- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0 0

MA0816.1_shift3 (Ascl2)
; dyads_m2 versus MA0816.1 (Ascl2); m=9/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.50962; ---arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0

MA1467.1_rc_shift3 (ATOH1(var.2)_rc)
; dyads_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=10/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.507872; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0

MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)
; dyads_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.497386; ---rrCAGCTGbt----- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0

MA0665.1_shift3 (MSC)
; dyads_m2 versus MA0665.1 (MSC); m=12/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.49356; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0

MA1100.2_rc_shift3 (ASCL1_rc)
; dyads_m2 versus MA1100.2_rc (ASCL1_rc); m=13/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.481896; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0

MA0691.1_shift3 (TFAP4)
; dyads_m2 versus MA0691.1 (TFAP4); m=14/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.47889; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0

MA1635.1_shift3 (BHLHE22(var.2))
; dyads_m2 versus MA1635.1 (BHLHE22(var.2)); m=15/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.472017; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0

MA0091.1_shift1 (TAL1::TCF3)
; dyads_m2 versus MA0091.1 (TAL1::TCF3); m=16/21; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.471502; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0

MA1646.1_rc_shift5 (OSR2_rc)
; dyads_m2 versus MA1646.1_rc (OSR2_rc); m=17/21; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.468817; -----ydGCTTCTGtkt- ; cor=; Ncor= a 0 0 0 0 0 2730.0 3882.0 1192.0 240.0 279.0 1526.0 157.0 275.0 211.0 1950.0 3352.0 3484.0 0 c 0 0 0 0 0 4726.0 2266.0 841.0 13982.0 516.0 901.0 14206.0 737.0 406.0 2117.0 3006.0 3246.0 0 g 0 0 0 0 0 3304.0 4274.0 12109.0 170.0 288.0 703.0 229.0 197.0 13937.0 2221.0 4206.0 3641.0 0 t 0 0 0 0 0 4048.0 4386.0 666.0 416.0 13725.0 11678.0 216.0 13599.0 254.0 8520.0 4244.0 4437.0 0

MA0667.1_rc_shift3 (MYF6_rc)
; dyads_m2 versus MA0667.1_rc (MYF6_rc); m=18/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.468764; ---RACAGyTGTT----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0

MA0048.2_shift3 (NHLH1)
; dyads_m2 versus MA0048.2 (NHLH1); m=19/21; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.451339; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0

MA1648.1_shift3 (TCF12(var.2))
; dyads_m2 versus MA1648.1 (TCF12(var.2)); m=20/21; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.433419; ---ssCACCTGCys---- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0 0

MA0820.1_rc_shift3 (FIGLA_rc)
; dyads_m2 versus MA0820.1_rc (FIGLA_rc); m=21/21; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.416078; ---wmCAGGTGkw----- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m11_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m11_shift0 (oligos_8nt_mkv2_m11oligos_8nt_mkv2_m11)
; oligos_8nt_mkv2_m11 (oligos_8nt_mkv2_m11oligos_8nt_mkv2_m11); m=0 (reference); ncol1=13; shift=0; ncol=13; AGAAATRCACACT ; Alignment reference a 59 4 71 72 71 0 18 0 68 0 72 1 3 c 0 2 1 0 0 2 2 71 1 72 0 52 0 g 3 63 0 0 0 1 50 0 1 0 0 9 3 t 10 3 0 0 1 69 2 1 2 0 0 10 66

MA0479.1_shift0 (FOXH1)
; oligos_8nt_mkv2_m11 versus MA0479.1 (FOXH1); m=1/1; ncol2=11; w=11; offset=0; strand=D; shift=0; score=0.622566; ybsAATMCACA-- ; cor=; Ncor= a 939.0 1578.0 973.0 8211.0 7547.0 0.0 2374.0 1414.0 8211.0 0.0 7138.0 0 0 c 2840.0 2333.0 3261.0 0.0 0.0 0.0 5773.0 6797.0 0.0 8211.0 0.0 0 0 g 1490.0 2137.0 3156.0 0.0 229.0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 t 2942.0 2163.0 821.0 0.0 435.0 8211.0 64.0 0.0 0.0 0.0 1073.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m11_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m11_shift3 (dyads_m11dyads_m11)
; dyads_m11 (dyads_m11dyads_m11); m=0 (reference); ncol1=12; shift=3; ncol=15; ---ccCCCTGCCwct ; Alignment reference a 0 0 0 2 7 0 0 0 0 0 1 0 9 5 7 c 0 0 0 19 15 28 29 29 0 0 28 29 2 16 6 g 0 0 0 7 3 1 0 0 0 29 0 0 0 5 3 t 0 0 0 1 4 0 0 0 29 0 0 0 18 3 13

MA1653.1_shift2 (ZNF148)
; dyads_m11 versus MA1653.1 (ZNF148); m=1/7; ncol2=12; w=11; offset=-1; strand=D; shift=2; score=0.609695; --ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA1522.1_shift2 (MAZ)
; dyads_m11 versus MA1522.1 (MAZ); m=2/7; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.561423; --ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0

MA1631.1_shift1 (ASCL1(var.2))
; dyads_m11 versus MA1631.1 (ASCL1(var.2)); m=3/7; ncol2=13; w=11; offset=-2; strand=D; shift=1; score=0.55444; -cdgCACCTGCysc- ; cor=; Ncor= a 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0

MA0155.1_rc_shift1 (INSM1_rc)
; dyads_m11 versus MA0155.1_rc (INSM1_rc); m=4/7; ncol2=12; w=10; offset=-2; strand=R; shift=1; score=0.543468; -ygmCCCCwkrCA-- ; cor=; Ncor= a 0 2.0 5.0 6.0 0.0 0.0 0.0 0.0 8.0 3.0 13.0 4.0 19.0 0 0 c 0 12.0 0.0 16.0 24.0 24.0 23.0 24.0 0.0 0.0 3.0 20.0 4.0 0 0 g 0 0.0 16.0 2.0 0.0 0.0 1.0 0.0 0.0 15.0 8.0 0.0 0.0 0 0 t 0 10.0 3.0 0.0 0.0 0.0 0.0 0.0 16.0 6.0 0.0 0.0 1.0 0 0

MA1102.2_rc_shift0 (CTCFL_rc)
; dyads_m11 versus MA1102.2_rc (CTCFL_rc); m=5/7; ncol2=12; w=9; offset=-3; strand=R; shift=0; score=0.495225; scGCCCCCTGsy--- ; cor=; Ncor= a 2198.0 1557.0 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 1251.0 3188.0 0 0 0 c 6341.0 9299.0 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 7094.0 4844.0 0 0 0 g 7727.0 3015.0 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 7033.0 4180.0 0 0 0 t 1771.0 4166.0 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 2659.0 5825.0 0 0 0

MA0597.1_shift7 (THAP1)
; dyads_m11 versus MA0597.1 (THAP1); m=6/7; ncol2=9; w=8; offset=4; strand=D; shift=7; score=0.453762; -------ytGCCMky ; cor=; Ncor= a 0 0 0 0 0 0 0 18.0 15.0 20.0 7.0 3.0 58.0 47.0 30.0 c 0 0 0 0 0 0 0 93.0 47.0 0.0 182.0 195.0 136.0 17.0 71.0 g 0 0 0 0 0 0 0 27.0 12.0 137.0 0.0 0.0 1.0 77.0 41.0 t 0 0 0 0 0 0 0 61.0 125.0 42.0 10.0 1.0 4.0 58.0 57.0

MA0057.1_rc_shift1 (MZF1(var.2)_rc)
; dyads_m11 versus MA0057.1_rc (MZF1(var.2)_rc); m=7/7; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.411094; -yymCCCMTmv---- ; cor=; Ncor= a 0 2.0 2.0 4.0 2.0 0.0 1.0 5.0 0.0 7.0 4.0 0 0 0 0 c 0 4.0 4.0 8.0 14.0 14.0 15.0 11.0 0.0 7.0 7.0 0 0 0 0 g 0 2.0 0.0 1.0 0.0 2.0 0.0 0.0 1.0 0.0 4.0 0 0 0 0 t 0 8.0 10.0 3.0 0.0 0.0 0.0 0.0 15.0 2.0 1.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m4_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m4_shift4 (oligos_8nt_mkv2_m4oligos_8nt_mkv2_m4)
; oligos_8nt_mkv2_m4 (oligos_8nt_mkv2_m4oligos_8nt_mkv2_m4); m=0 (reference); ncol1=13; shift=4; ncol=17; ----WAmACTGAAAAwC ; Alignment reference a 0 0 0 0 90 95 51 131 14 2 3 130 130 127 126 83 5 c 0 0 0 0 6 1 77 0 115 0 0 0 1 1 3 3 92 g 0 0 0 0 2 11 0 0 2 11 126 1 0 2 1 1 30 t 0 0 0 0 33 24 3 0 0 118 2 0 0 1 1 44 4

MA1623.1_shift3 (Stat2)
; oligos_8nt_mkv2_m4 versus MA1623.1 (Stat2); m=1/3; ncol2=13; w=12; offset=-1; strand=D; shift=3; score=0.609155; ---rgAAACAGAAAsw- ; cor=; Ncor= a 0 0 0 1605.0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 740.0 1262.0 0 c 0 0 0 538.0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 1502.0 758.0 0 g 0 0 0 1125.0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 1180.0 591.0 0 t 0 0 0 691.0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 537.0 1348.0 0

MA1155.1_shift0 (ZSCAN4)
; oligos_8nt_mkv2_m4 versus MA1155.1 (ZSCAN4); m=2/3; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.500037; tGCACACmCTGaAAa-- ; cor=; Ncor= a 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 1000.0 0 0 c 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 200.0 0 0 g 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 365.0 0 0 t 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0 229.0 0 0

MA0152.1_rc_shift9 (NFATC2_rc)
; oligos_8nt_mkv2_m4 versus MA0152.1_rc (NFATC2_rc); m=3/3; ncol2=7; w=7; offset=5; strand=R; shift=9; score=0.402833; ---------TGGAAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 g 0 0 0 0 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 t 0 0 0 0 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0

One-to-n matrix alignment; reference matrix: dyads_m23_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m23_shift2 (dyads_m23dyads_m23)
; dyads_m23 (dyads_m23dyads_m23); m=0 (reference); ncol1=12; shift=2; ncol=14; --gMACAcTGTAGr ; Alignment reference a 0 0 21 26 95 0 95 5 6 0 0 95 10 47 c 0 0 21 67 0 95 0 55 1 0 0 0 2 3 g 0 0 50 0 0 0 0 14 4 95 0 0 67 44 t 0 0 3 2 0 0 0 21 84 0 95 0 16 1

MA1580.1_rc_shift4 (ZBTB32_rc)
; dyads_m23 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.59564; ----wtACTGTACa ; cor=; Ncor= a 0 0 0 0 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 c 0 0 0 0 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 g 0 0 0 0 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 t 0 0 0 0 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0

MA1585.1_shift6 (ZKSCAN1)
; dyads_m23 versus MA1585.1 (ZKSCAN1); m=2/3; ncol2=10; w=8; offset=4; strand=D; shift=6; score=0.415471; ------AyAGTAGG ; cor=; Ncor= a 0 0 0 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 c 0 0 0 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 g 0 0 0 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 t 0 0 0 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0

MA1562.1_shift0 (SOX14)
; dyads_m23 versus MA1562.1 (SOX14); m=3/3; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=0.413424; cCGAACAATg---- ; cor=; Ncor= a 265.0 68.0 44.0 594.0 594.0 4.0 594.0 594.0 0.0 75.0 0 0 0 0 c 594.0 594.0 18.0 8.0 13.0 594.0 0.0 17.0 2.0 67.0 0 0 0 0 g 214.0 44.0 594.0 27.0 0.0 10.0 0.0 0.0 16.0 372.0 0 0 0 0 t 182.0 99.0 70.0 37.0 19.0 17.0 0.0 5.0 594.0 80.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m9_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m9_shift0 (oligos_8nt_mkv2_m9oligos_8nt_mkv2_m9)
; oligos_8nt_mkv2_m9 (oligos_8nt_mkv2_m9oligos_8nt_mkv2_m9); m=0 (reference); ncol1=12; shift=0; ncol=12; ayGTTTTTCAsK ; Alignment reference a 51 4 20 1 2 1 0 3 0 95 8 1 c 7 52 1 0 0 1 2 0 94 1 29 3 g 19 5 77 0 1 0 0 0 0 0 47 27 t 23 39 2 99 97 98 98 97 6 4 16 69

MA0606.1_shift2 (NFAT5)
; oligos_8nt_mkv2_m9 versus MA0606.1 (NFAT5); m=1/2; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.593243; --atTTTCCAyw ; cor=; Ncor= a 0 0 371.0 176.0 0.0 0.0 89.0 0.0 0.0 831.0 124.0 268.0 c 0 0 210.0 88.0 0.0 0.0 84.0 915.0 826.0 84.0 287.0 163.0 g 0 0 210.0 88.0 0.0 0.0 0.0 0.0 85.0 0.0 41.0 248.0 t 0 0 210.0 649.0 1000.0 1000.0 827.0 85.0 89.0 85.0 548.0 322.0

MA0152.1_shift3 (NFATC2)
; oligos_8nt_mkv2_m9 versus MA0152.1 (NFATC2); m=2/2; ncol2=7; w=7; offset=3; strand=D; shift=3; score=0.446461; ---TTTTCCA-- ; cor=; Ncor= a 0 0 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0 c 0 0 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0 g 0 0 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0 t 0 0 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0

One-to-n matrix alignment; reference matrix: dyads_m10_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m10_shift0 (dyads_m10dyads_m10)
; dyads_m10 (dyads_m10dyads_m10); m=0 (reference); ncol1=15; shift=0; ncol=17; TTCTCATTTTCCaTG-- ; Alignment reference a 5 4 0 0 0 66 2 3 5 0 0 0 44 5 12 0 0 c 2 9 71 1 72 2 4 9 10 0 72 71 14 9 7 0 0 g 9 4 1 0 0 1 10 4 2 0 0 0 12 8 51 0 0 t 56 55 0 71 0 3 56 56 55 72 0 1 2 50 2 0 0

MA1525.1_rc_shift5 (NFATC4_rc)
; dyads_m10 versus MA1525.1_rc (NFATC4_rc); m=1/7; ncol2=10; w=10; offset=5; strand=R; shift=5; score=0.588175; -----wkTTTCCryt-- ; cor=; Ncor= a 0 0 0 0 0 2239.0 1292.0 259.0 0.0 0.0 0.0 0.0 2816.0 843.0 819.0 0 0 c 0 0 0 0 0 348.0 1789.0 127.0 0.0 0.0 4349.0 4349.0 0.0 2369.0 963.0 0 0 g 0 0 0 0 0 632.0 3276.0 1084.0 0.0 39.0 0.0 0.0 1534.0 329.0 916.0 0 0 t 0 0 0 0 0 1132.0 4349.0 4349.0 4349.0 4349.0 0.0 0.0 95.0 4349.0 1652.0 0 0

MA0606.1_shift5 (NFAT5)
; dyads_m10 versus MA0606.1 (NFAT5); m=2/7; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.579484; -----atTTTCCAyw-- ; cor=; Ncor= a 0 0 0 0 0 371.0 176.0 0.0 0.0 89.0 0.0 0.0 831.0 124.0 268.0 0 0 c 0 0 0 0 0 210.0 88.0 0.0 0.0 84.0 915.0 826.0 84.0 287.0 163.0 0 0 g 0 0 0 0 0 210.0 88.0 0.0 0.0 0.0 0.0 85.0 0.0 41.0 248.0 0 0 t 0 0 0 0 0 210.0 649.0 1000.0 1000.0 827.0 85.0 89.0 85.0 548.0 322.0 0 0

MA0625.1_shift5 (NFATC3)
; dyads_m10 versus MA0625.1 (NFATC3); m=3/7; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.577243; -----wtTTTCCryt-- ; cor=; Ncor= a 0 0 0 0 0 421.0 179.0 117.0 14.0 3.0 36.0 8.0 552.0 173.0 215.0 0 0 c 0 0 0 0 0 93.0 181.0 40.0 10.0 23.0 933.0 959.0 39.0 251.0 211.0 0 0 g 0 0 0 0 0 139.0 168.0 73.0 5.0 9.0 1.0 23.0 342.0 133.0 173.0 0 0 t 0 0 0 0 0 348.0 472.0 770.0 971.0 966.0 30.0 10.0 67.0 443.0 400.0 0 0

MA0624.1_shift5 (NFATC1)
; dyads_m10 versus MA0624.1 (NFATC1); m=4/7; ncol2=10; w=10; offset=5; strand=D; shift=5; score=0.567334; -----wttTTCCryt-- ; cor=; Ncor= a 0 0 0 0 0 383.0 226.0 158.0 19.0 21.0 14.0 9.0 516.0 230.0 230.0 0 0 c 0 0 0 0 0 134.0 193.0 60.0 35.0 29.0 971.0 967.0 45.0 262.0 227.0 0 0 g 0 0 0 0 0 167.0 189.0 122.0 7.0 15.0 8.0 5.0 357.0 126.0 194.0 0 0 t 0 0 0 0 0 316.0 392.0 660.0 939.0 935.0 7.0 18.0 83.0 383.0 349.0 0 0

MA1549.1_rc_shift0 (POU6F1(var.2)_rc)
; dyads_m10 versus MA1549.1_rc (POU6F1(var.2)_rc); m=5/7; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.468096; asCTCATTAy------- ; cor=; Ncor= a 2064.0 1462.0 1855.0 411.0 615.0 6413.0 0.0 0.0 6413.0 1312.0 0 0 0 0 0 0 0 c 1534.0 3348.0 6413.0 0.0 5799.0 298.0 0.0 255.0 10.0 1930.0 0 0 0 0 0 0 0 g 1238.0 3065.0 851.0 96.0 206.0 0.0 0.0 179.0 273.0 416.0 0 0 0 0 0 0 0 t 1577.0 1972.0 314.0 6413.0 67.0 0.0 6413.0 6413.0 164.0 2756.0 0 0 0 0 0 0 0

MA0152.1_shift6 (NFATC2)
; dyads_m10 versus MA0152.1 (NFATC2); m=6/7; ncol2=7; w=7; offset=6; strand=D; shift=6; score=0.460631; ------TTTTCCA---- ; cor=; Ncor= a 0 0 0 0 0 0 3.0 1.0 1.0 0.0 1.0 0.0 18.0 0 0 0 0 c 0 0 0 0 0 0 1.0 2.0 1.0 0.0 25.0 26.0 3.0 0 0 0 0 g 0 0 0 0 0 0 2.0 2.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0 0 20.0 21.0 24.0 26.0 0.0 0.0 4.0 0 0 0 0

MA0519.1_shift6 (Stat5a::Stat5b)
; dyads_m10 versus MA0519.1 (Stat5a::Stat5b); m=7/7; ncol2=11; w=9; offset=6; strand=D; shift=6; score=0.404073; ------rtTTCCmRGAA ; cor=; Ncor= a 0 0 0 0 0 0 6172.0 2073.0 0.0 0.0 0.0 263.0 7044.0 11543.0 0.0 14888.0 14886.0 c 0 0 0 0 0 0 2326.0 3596.0 0.0 1600.0 16341.0 12795.0 6137.0 0.0 0.0 93.0 0.0 g 0 0 0 0 0 0 4425.0 2901.0 0.0 0.0 0.0 0.0 0.0 4140.0 16507.0 0.0 1621.0 t 0 0 0 0 0 0 3584.0 7937.0 16507.0 14907.0 166.0 3449.0 3326.0 824.0 0.0 1526.0 0.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m6_shift3 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m6_shift3 (oligos_6nt_mkv2_m6oligos_6nt_mkv2_m6)
; oligos_6nt_mkv2_m6 (oligos_6nt_mkv2_m6oligos_6nt_mkv2_m6); m=0 (reference); ncol1=11; shift=3; ncol=14; ---ssCCGCCGGGs ; Alignment reference a 0 0 0 3 2 1 0 0 0 0 0 2 2 4 c 0 0 0 11 13 21 25 1 23 22 3 3 4 10 g 0 0 0 10 9 3 1 25 3 4 23 20 18 11 t 0 0 0 2 2 1 0 0 0 0 0 1 2 1

MA1513.1_shift2 (KLF15)
; oligos_6nt_mkv2_m6 versus MA1513.1 (KLF15); m=1/2; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.586589; --scCCCGCCCcs- ; cor=; Ncor= a 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0

MA1122.1_rc_shift0 (TFDP1_rc)
; oligos_6nt_mkv2_m6 versus MA1122.1_rc (TFDP1_rc); m=2/2; ncol2=11; w=8; offset=-3; strand=R; shift=0; score=0.411274; ssTTCCCGCsc--- ; cor=; Ncor= a 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 c 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 g 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 t 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m5_shift0 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m5_shift0 (oligos_8nt_mkv2_m5oligos_8nt_mkv2_m5)
; oligos_8nt_mkv2_m5 (oligos_8nt_mkv2_m5oligos_8nt_mkv2_m5); m=0 (reference); ncol1=18; shift=0; ncol=18; sygCAGCAGCTGCTGcrs ; Alignment reference a 2 4 4 1 16 0 0 18 0 0 0 0 1 2 1 2 5 4 c 7 5 4 13 0 0 18 0 1 17 0 0 17 0 3 8 4 5 g 5 4 8 3 0 17 0 0 17 1 0 18 0 0 13 4 5 7 t 4 5 2 1 2 1 0 0 0 0 18 0 0 16 1 4 4 2

MA0500.2_shift3 (MYOG)
; oligos_8nt_mkv2_m5 versus MA0500.2 (MYOG); m=1/16; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.574853; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0

MA0832.1_rc_shift2 (Tcf21_rc)
; oligos_8nt_mkv2_m5 versus MA0832.1_rc (Tcf21_rc); m=2/16; ncol2=14; w=14; offset=2; strand=R; shift=2; score=0.57079; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0

MA1631.1_shift3 (ASCL1(var.2))
; oligos_8nt_mkv2_m5 versus MA1631.1 (ASCL1(var.2)); m=3/16; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.53348; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0

MA0816.1_shift4 (Ascl2)
; oligos_8nt_mkv2_m5 versus MA0816.1 (Ascl2); m=4/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.521521; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0

MA0830.2_shift3 (TCF4)
; oligos_8nt_mkv2_m5 versus MA0830.2 (TCF4); m=5/16; ncol2=13; w=13; offset=3; strand=D; shift=3; score=0.518906; ---cggCACCTGccss-- ; cor=; Ncor= a 0 0 0 6048.0 7034.0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 5534.0 6413.0 5133.0 0 0 c 0 0 0 10052.0 6754.0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 12872.0 8658.0 9843.0 0 0 g 0 0 0 7140.0 8618.0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 4933.0 7964.0 7662.0 0 0 t 0 0 0 6225.0 7059.0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 6126.0 6430.0 6827.0 0 0

MA0521.1_shift4 (Tcf12)
; oligos_8nt_mkv2_m5 versus MA0521.1 (Tcf12); m=6/16; ncol2=11; w=11; offset=4; strand=D; shift=4; score=0.500992; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0

MA1100.2_shift4 (ASCL1)
; oligos_8nt_mkv2_m5 versus MA1100.2 (ASCL1); m=7/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.485409; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0

MA0048.2_rc_shift4 (NHLH1_rc)
; oligos_8nt_mkv2_m5 versus MA0048.2_rc (NHLH1_rc); m=8/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.485106; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0

MA1619.1_shift3 (Ptf1a(var.2))
; oligos_8nt_mkv2_m5 versus MA1619.1 (Ptf1a(var.2)); m=9/16; ncol2=12; w=12; offset=3; strand=D; shift=3; score=0.474658; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0

MA1641.1_rc_shift3 (MYF5_rc)
; oligos_8nt_mkv2_m5 versus MA1641.1_rc (MYF5_rc); m=10/16; ncol2=12; w=12; offset=3; strand=R; shift=3; score=0.468838; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0

MA1635.1_shift4 (BHLHE22(var.2))
; oligos_8nt_mkv2_m5 versus MA1635.1 (BHLHE22(var.2)); m=11/16; ncol2=10; w=10; offset=4; strand=D; shift=4; score=0.457978; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0

MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)
; oligos_8nt_mkv2_m5 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=12/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.453841; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0

MA0691.1_rc_shift4 (TFAP4_rc)
; oligos_8nt_mkv2_m5 versus MA0691.1_rc (TFAP4_rc); m=13/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.441498; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 1613.0 0.0 3423.0 6.0 14.0 0.0 0.0 1264.0 228.0 0 0 0 0 c 0 0 0 0 433.0 333.0 3423.0 0.0 49.0 3423.0 0.0 0.0 62.0 337.0 0 0 0 0 g 0 0 0 0 682.0 114.0 1.0 1.0 3423.0 85.0 2.0 3423.0 546.0 500.0 0 0 0 0 t 0 0 0 0 299.0 1810.0 0.0 1.0 21.0 2.0 3423.0 0.0 2159.0 3423.0 0 0 0 0

MA1648.1_rc_shift3 (TCF12(var.2)_rc)
; oligos_8nt_mkv2_m5 versus MA1648.1_rc (TCF12(var.2)_rc); m=14/16; ncol2=11; w=11; offset=3; strand=R; shift=3; score=0.430081; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0

MA0665.1_rc_shift4 (MSC_rc)
; oligos_8nt_mkv2_m5 versus MA0665.1_rc (MSC_rc); m=15/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.422799; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 0 c 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 0 g 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 0 t 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0 0

MA1467.1_rc_shift4 (ATOH1(var.2)_rc)
; oligos_8nt_mkv2_m5 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/16; ncol2=10; w=10; offset=4; strand=R; shift=4; score=0.408192; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m20_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m20_shift4 (oligos_8nt_mkv2_m20oligos_8nt_mkv2_m20)
; oligos_8nt_mkv2_m20 (oligos_8nt_mkv2_m20oligos_8nt_mkv2_m20); m=0 (reference); ncol1=13; shift=4; ncol=17; ----swGAGGCAGGGrG ; Alignment reference a 0 0 0 0 2 11 1 25 0 0 1 25 0 6 0 8 2 c 0 0 0 0 13 2 2 0 0 0 25 0 0 0 0 1 3 g 0 0 0 0 11 6 23 0 26 25 0 0 26 20 26 14 19 t 0 0 0 0 0 7 0 1 0 1 0 1 0 0 0 3 2

MA1596.1_rc_shift1 (ZNF460_rc)
; oligos_8nt_mkv2_m20 versus MA1596.1_rc (ZNF460_rc); m=1/3; ncol2=16; w=13; offset=-3; strand=R; shift=1; score=0.570564; -CyyGGGAGGCkGAGGy ; cor=; Ncor= a 0 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 46.0 c 0 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 1023.0 g 0 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 131.0 t 0 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0 412.0

MA1102.2_shift8 (CTCFL)
; oligos_8nt_mkv2_m20 versus MA1102.2 (CTCFL); m=2/3; ncol2=12; w=9; offset=4; strand=D; shift=8; score=0.460605; --------rsCAGGGGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5825.0 2659.0 1301.0 17270.0 86.0 684.0 349.0 193.0 351.0 c 0 0 0 0 0 0 0 0 4180.0 7033.0 12867.0 413.0 481.0 600.0 1141.0 767.0 270.0 g 0 0 0 0 0 0 0 0 4844.0 7094.0 2033.0 329.0 17285.0 16511.0 15425.0 16819.0 17001.0 t 0 0 0 0 0 0 0 0 3188.0 1251.0 1836.0 25.0 185.0 242.0 1122.0 258.0 415.0

MA0003.4_rc_shift0 (TFAP2A_rc)
; oligos_8nt_mkv2_m20 versus MA0003.4_rc (TFAP2A_rc); m=3/3; ncol2=14; w=10; offset=-4; strand=R; shift=0; score=0.427855; tksCCTGAGGcarb--- ; cor=; Ncor= a 3008.0 3914.0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 6701.0 5211.0 3469.0 0 0 0 c 3841.0 3051.0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 3791.0 3374.0 4072.0 0 0 0 g 3915.0 4783.0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 2634.0 4620.0 4092.0 0 0 0 t 5204.0 4220.0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 2842.0 2763.0 4335.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m15_shift5 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m15_shift5 (oligos_8nt_mkv2_m15oligos_8nt_mkv2_m15)
; oligos_8nt_mkv2_m15 (oligos_8nt_mkv2_m15oligos_8nt_mkv2_m15); m=0 (reference); ncol1=12; shift=5; ncol=17; -----vcCCGCCGcGss ; Alignment reference a 0 0 0 0 0 4 0 0 1 0 1 0 0 2 0 1 1 c 0 0 0 0 0 6 9 14 13 0 12 12 1 9 0 5 4 g 0 0 0 0 0 4 3 0 0 14 1 2 13 2 14 8 7 t 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 2

MA1513.1_shift4 (KLF15)
; oligos_8nt_mkv2_m15 versus MA1513.1 (KLF15); m=1/5; ncol2=11; w=10; offset=-1; strand=D; shift=4; score=0.561607; ----scCCCGCCCcs-- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0 0

MA0697.1_shift1 (ZIC3)
; oligos_8nt_mkv2_m15 versus MA0697.1 (ZIC3); m=2/5; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.539368; -gACCCCCYGCtGyGh- ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0 0

MA0751.1_shift1 (ZIC4)
; oligos_8nt_mkv2_m15 versus MA0751.1 (ZIC4); m=3/5; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.523512; -krCCCCCyGykGyGh- ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0 0

MA1584.1_shift0 (ZIC5)
; oligos_8nt_mkv2_m15 versus MA1584.1 (ZIC5); m=4/5; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.503638; mgACCCCCCGCtGyGm- ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0 0

MA0696.1_shift1 (ZIC1)
; oligos_8nt_mkv2_m15 versus MA0696.1 (ZIC1); m=5/5; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.476436; -gACCCCCyGCTGyG-- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m10_shift3 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m10_shift3 (oligos_7nt_mkv2_m10oligos_7nt_mkv2_m10)
; oligos_7nt_mkv2_m10 (oligos_7nt_mkv2_m10oligos_7nt_mkv2_m10); m=0 (reference); ncol1=11; shift=3; ncol=18; ---GRAAAATGAGA---- ; Alignment reference a 0 0 0 3 34 112 112 110 112 0 0 112 1 92 0 0 0 0 c 0 0 0 2 1 0 0 0 0 0 0 0 16 2 0 0 0 0 g 0 0 0 105 77 0 0 0 0 0 112 0 77 17 0 0 0 0 t 0 0 0 2 0 0 0 2 0 112 0 0 18 1 0 0 0 0

MA0517.1_rc_shift3 (STAT1::STAT2_rc)
; oligos_7nt_mkv2_m10 versus MA0517.1_rc (STAT1::STAT2_rc); m=1/9; ncol2=15; w=11; offset=0; strand=R; shift=3; score=0.561567; ---rGRAAmyGAAACTra ; cor=; Ncor= a 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 c 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 g 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 t 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0

MA1549.1_shift5 (POU6F1(var.2))
; oligos_7nt_mkv2_m10 versus MA1549.1 (POU6F1(var.2)); m=2/9; ncol2=10; w=9; offset=2; strand=D; shift=5; score=0.545371; -----rTAATGAGst--- ; cor=; Ncor= a 0 0 0 0 0 2756.0 164.0 6413.0 6413.0 0.0 67.0 6413.0 314.0 1972.0 1577.0 0 0 0 c 0 0 0 0 0 416.0 273.0 179.0 0.0 0.0 206.0 96.0 851.0 3065.0 1238.0 0 0 0 g 0 0 0 0 0 1930.0 10.0 255.0 0.0 298.0 5799.0 0.0 6413.0 3348.0 1534.0 0 0 0 t 0 0 0 0 0 1312.0 6413.0 0.0 0.0 6413.0 615.0 411.0 1855.0 1462.0 2064.0 0 0 0

MA0152.1_rc_shift2 (NFATC2_rc)
; oligos_7nt_mkv2_m10 versus MA0152.1_rc (NFATC2_rc); m=3/9; ncol2=7; w=6; offset=-1; strand=R; shift=2; score=0.480475; --TGGAAAA--------- ; cor=; Ncor= a 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 0 0 0 0 0 0 0 c 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 0 0 0 0 0 0 0 g 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 0 0 0 0 0 0 0 t 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0 0 0 0 0 0 0 0

MA0606.1_rc_shift0 (NFAT5_rc)
; oligos_7nt_mkv2_m10 versus MA0606.1_rc (NFAT5_rc); m=4/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.452735; wrTGGAAAat-------- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 0 0 0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0 0 0 0 0

MA0051.1_shift3 (IRF2)
; oligos_7nt_mkv2_m10 versus MA0051.1 (IRF2); m=5/9; ncol2=18; w=11; offset=0; strand=D; shift=3; score=0.440893; ---sGAAAGyGAAAsyrw ; cor=; Ncor= a 0 0 0 0.0 2.0 12.0 11.0 12.0 2.0 0.0 0.0 12.0 12.0 12.0 0.0 0.0 5.0 6.0 c 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 6.0 7.0 2.0 0.0 g 0 0 0 7.0 10.0 0.0 0.0 0.0 10.0 0.0 12.0 0.0 0.0 0.0 6.0 2.0 3.0 2.0 t 0 0 0 1.0 0.0 0.0 1.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 0.0 3.0 2.0 4.0

MA0625.1_rc_shift0 (NFATC3_rc)
; oligos_7nt_mkv2_m10 versus MA0625.1_rc (NFATC3_rc); m=6/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.440449; aryGGAAAaw-------- ; cor=; Ncor= a 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 0 0 0 0 c 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 0 0 0 0 g 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 0 0 0 0 t 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0 0 0 0 0

MA1562.1_shift1 (SOX14)
; oligos_7nt_mkv2_m10 versus MA1562.1 (SOX14); m=7/9; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.44007; -cCGAACAATg------- ; cor=; Ncor= a 0 265.0 68.0 44.0 594.0 594.0 4.0 594.0 594.0 0.0 75.0 0 0 0 0 0 0 0 c 0 594.0 594.0 18.0 8.0 13.0 594.0 0.0 17.0 2.0 67.0 0 0 0 0 0 0 0 g 0 214.0 44.0 594.0 27.0 0.0 10.0 0.0 0.0 16.0 372.0 0 0 0 0 0 0 0 t 0 182.0 99.0 70.0 37.0 19.0 17.0 0.0 5.0 594.0 80.0 0 0 0 0 0 0 0

MA1525.1_shift0 (NFATC4)
; oligos_7nt_mkv2_m10 versus MA1525.1 (NFATC4); m=8/9; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=0.436684; aryGGAAAmw-------- ; cor=; Ncor= a 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 0 0 0 0 c 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 0 0 0 0 g 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 0 0 0 0 t 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0 0 0 0 0

MA0624.1_rc_shift0 (NFATC1_rc)
; oligos_7nt_mkv2_m10 versus MA0624.1_rc (NFATC1_rc); m=9/9; ncol2=10; w=7; offset=-3; strand=R; shift=0; score=0.422626; aryGGAAaaw-------- ; cor=; Ncor= a 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 0 0 0 0 c 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 0 0 0 0 g 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 0 0 0 0 t 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m26_shift5 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m26_shift5 (dyads_m26dyads_m26)
; dyads_m26 (dyads_m26dyads_m26); m=0 (reference); ncol1=12; shift=5; ncol=17; -----csCCGcsGCGss ; Alignment reference a 0 0 0 0 0 1 0 1 0 1 4 3 0 1 0 3 2 c 0 0 0 0 0 19 15 25 27 1 15 13 2 24 3 10 8 g 0 0 0 0 0 6 10 2 1 26 6 11 24 2 25 12 16 t 0 0 0 0 0 2 3 0 0 0 3 1 2 1 0 3 2

MA0697.1_shift1 (ZIC3)
; dyads_m26 versus MA0697.1 (ZIC3); m=1/5; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.553415; -gACCCCCYGCtGyGh- ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0 0

MA0751.1_shift1 (ZIC4)
; dyads_m26 versus MA0751.1 (ZIC4); m=2/5; ncol2=15; w=11; offset=-4; strand=D; shift=1; score=0.533236; -krCCCCCyGykGyGh- ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0 0

MA1584.1_shift0 (ZIC5)
; dyads_m26 versus MA1584.1 (ZIC5); m=3/5; ncol2=16; w=11; offset=-5; strand=D; shift=0; score=0.517538; mgACCCCCCGCtGyGm- ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0 0

MA0696.1_shift1 (ZIC1)
; dyads_m26 versus MA0696.1 (ZIC1); m=4/5; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.475885; -gACCCCCyGCTGyG-- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0 0

MA0736.1_shift1 (GLIS2)
; dyads_m26 versus MA0736.1 (GLIS2); m=5/5; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.450557; -kACCCCCCrCramG-- ; cor=; Ncor= a 0 74.0 813.0 3.0 4.0 7.0 2.0 56.0 52.0 412.0 3.0 459.0 484.0 407.0 15.0 0 0 c 0 179.0 94.0 1072.0 1074.0 1074.0 1087.0 1061.0 1056.0 12.0 1080.0 36.0 16.0 265.0 187.0 0 0 g 0 929.0 130.0 3.0 0.0 0.0 0.0 0.0 1.0 915.0 28.0 909.0 234.0 112.0 1051.0 0 0 t 0 439.0 1.0 5.0 1.0 14.0 0.0 4.0 99.0 50.0 69.0 64.0 228.0 197.0 63.0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m28_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m28_shift0 (oligos_8nt_mkv2_m28oligos_8nt_mkv2_m28)
; oligos_8nt_mkv2_m28 (oligos_8nt_mkv2_m28oligos_8nt_mkv2_m28); m=0 (reference); ncol1=12; shift=0; ncol=12; hsTCAAGTARvw ; Alignment reference a 2 0 0 0 7 7 0 0 7 5 3 2 c 3 4 0 6 0 0 0 0 0 0 2 1 g 0 3 0 0 0 0 7 0 0 2 2 1 t 2 0 7 1 0 0 0 7 0 0 0 3

MA0673.1_rc_shift1 (NKX2-8_rc)
; oligos_8nt_mkv2_m28 versus MA0673.1_rc (NKX2-8_rc); m=1/1; ncol2=9; w=9; offset=1; strand=R; shift=1; score=0.542685; -yTsRAGTGs-- ; cor=; Ncor= a 0 811.0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0 c 0 2593.0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0 g 0 1964.0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0 t 0 3194.0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m11_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m11_shift2 (oligos_7nt_mkv2_m11oligos_7nt_mkv2_m11)
; oligos_7nt_mkv2_m11 (oligos_7nt_mkv2_m11oligos_7nt_mkv2_m11); m=0 (reference); ncol1=11; shift=2; ncol=16; --CyCTGCCTChs--- ; Alignment reference a 0 0 3 0 0 0 0 0 0 0 0 10 0 0 0 0 c 0 0 27 18 34 0 0 35 35 0 35 11 15 0 0 0 g 0 0 1 2 1 1 35 0 0 0 0 2 17 0 0 0 t 0 0 4 15 0 34 0 0 0 35 0 12 3 0 0 0

MA1596.1_shift0 (ZNF460)
; oligos_7nt_mkv2_m11 versus MA1596.1 (ZNF460); m=1/5; ncol2=16; w=11; offset=-2; strand=D; shift=0; score=0.541224; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0

MA0003.4_shift3 (TFAP2A)
; oligos_7nt_mkv2_m11 versus MA0003.4 (TFAP2A); m=2/5; ncol2=14; w=10; offset=1; strand=D; shift=3; score=0.502209; ---vytgCCTCAGGsm ; cor=; Ncor= a 0 0 0 4335.0 2763.0 2842.0 1088.0 280.0 116.0 278.0 530.0 13567.0 186.0 154.0 1221.0 4220.0 c 0 0 0 4092.0 4620.0 2634.0 3615.0 15321.0 15351.0 1173.0 13536.0 739.0 217.0 234.0 9445.0 4783.0 g 0 0 0 4072.0 3374.0 3791.0 9961.0 187.0 212.0 750.0 1406.0 1229.0 15432.0 15422.0 4098.0 3051.0 t 0 0 0 3469.0 5211.0 6701.0 1304.0 180.0 289.0 13767.0 496.0 433.0 133.0 158.0 1204.0 3914.0

MA0814.2_rc_shift3 (TFAP2C(var.2)_rc)
; oligos_7nt_mkv2_m11 versus MA0814.2_rc (TFAP2C(var.2)_rc); m=3/5; ncol2=14; w=10; offset=1; strand=R; shift=3; score=0.483225; ---sbcGCCTCAGGcc ; cor=; Ncor= a 0 0 0 14898.0 10705.0 10707.0 3881.0 614.0 464.0 1084.0 1238.0 49003.0 660.0 702.0 4622.0 14497.0 c 0 0 0 17367.0 18680.0 27373.0 9867.0 57916.0 57995.0 3944.0 55222.0 4910.0 2060.0 2273.0 37729.0 20129.0 g 0 0 0 16468.0 15252.0 12553.0 42758.0 1575.0 1486.0 4733.0 3036.0 5539.0 57617.0 57108.0 14686.0 12565.0 t 0 0 0 12086.0 16182.0 10186.0 4313.0 714.0 874.0 51058.0 1323.0 1367.0 482.0 736.0 3782.0 13628.0

MA0812.1_rc_shift5 (TFAP2B(var.2)_rc)
; oligos_7nt_mkv2_m11 versus MA0812.1_rc (TFAP2B(var.2)_rc); m=4/5; ncol2=11; w=8; offset=3; strand=R; shift=5; score=0.43796; -----hGCCTsrGGCk ; cor=; Ncor= a 0 0 0 0 0 1207.0 25.0 1.0 2.0 14.0 348.0 2716.0 158.0 0.0 30.0 1121.0 c 0 0 0 0 0 1149.0 299.0 4549.0 4549.0 446.0 1498.0 612.0 1.0 4.0 3940.0 232.0 g 0 0 0 0 0 371.0 4250.0 10.0 4.0 608.0 2126.0 1204.0 4549.0 4549.0 609.0 1412.0 t 0 0 0 0 0 1822.0 47.0 6.0 235.0 3480.0 576.0 16.0 0.0 0.0 36.0 1784.0

MA1569.1_shift5 (TFAP2E)
; oligos_7nt_mkv2_m11 versus MA1569.1 (TFAP2E); m=5/5; ncol2=11; w=8; offset=3; strand=D; shift=5; score=0.404998; -----ysCCysrGGsr ; cor=; Ncor= a 0 0 0 0 0 2554.0 0.0 0.0 0.0 0.0 1440.0 7716.0 0.0 0.0 0.0 4904.0 c 0 0 0 0 0 5504.0 6924.0 14449.0 14449.0 4768.0 5928.0 2419.0 0.0 0.0 14449.0 1506.0 g 0 0 0 0 0 1434.0 14449.0 0.0 0.0 2053.0 5766.0 4463.0 14449.0 14449.0 6818.0 5310.0 t 0 0 0 0 0 4957.0 0.0 0.0 0.0 7858.0 1316.0 0.0 0.0 0.0 0.0 2729.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m14_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m14_shift3 (oligos_7nt_mkv2_m14oligos_7nt_mkv2_m14)
; oligos_7nt_mkv2_m14 (oligos_7nt_mkv2_m14oligos_7nt_mkv2_m14); m=0 (reference); ncol1=11; shift=3; ncol=15; ---tMACTCACTCA- ; Alignment reference a 0 0 0 1 17 24 0 0 0 24 0 0 2 21 0 c 0 0 0 5 7 0 24 0 24 0 24 0 20 1 0 g 0 0 0 2 0 0 0 0 0 0 0 0 2 1 0 t 0 0 0 16 0 0 0 24 0 0 0 24 0 1 0

MA1523.1_shift1 (MSANTD3)
; oligos_7nt_mkv2_m14 versus MA1523.1 (MSANTD3); m=1/6; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=0.523543; -stmCACTCAm---- ; cor=; Ncor= a 0 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 c 0 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 g 0 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 t 0 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0

MA0503.1_shift5 (Nkx2-5(var.2))
; oligos_7nt_mkv2_m14 versus MA0503.1 (Nkx2-5(var.2)); m=2/6; ncol2=11; w=9; offset=2; strand=D; shift=5; score=0.491186; -----arsCWCTCAa ; cor=; Ncor= a 0 0 0 0 0 1790.0 1282.0 344.0 0.0 2467.0 0.0 0.0 0.0 2858.0 2265.0 c 0 0 0 0 0 327.0 192.0 1777.0 3429.0 6.0 3429.0 0.0 3391.0 431.0 3.0 g 0 0 0 0 0 821.0 1467.0 1292.0 0.0 0.0 0.0 0.0 0.0 0.0 825.0 t 0 0 0 0 0 491.0 488.0 16.0 0.0 956.0 0.0 3429.0 38.0 140.0 336.0

MA1645.1_shift4 (NKX2-2)
; oligos_7nt_mkv2_m14 versus MA1645.1 (NKX2-2); m=3/6; ncol2=14; w=10; offset=1; strand=D; shift=4; score= 0.4748; ----hawCCACTCAA ; cor=; Ncor= a 0 0 0 0 6953.0 9464.0 7295.0 2438.0 618.0 23748.0 478.0 490.0 397.0 21326.0 20003.0 c 0 0 0 0 6959.0 5638.0 5558.0 20232.0 24341.0 463.0 24693.0 452.0 24058.0 2772.0 2104.0 g 0 0 0 0 4904.0 4854.0 6329.0 2293.0 176.0 257.0 420.0 295.0 838.0 580.0 2266.0 t 0 0 0 0 7207.0 6067.0 6841.0 1060.0 888.0 1555.0 432.0 24786.0 730.0 1345.0 1650.0

MA0063.2_shift6 (NKX2-5)
; oligos_7nt_mkv2_m14 versus MA0063.2 (NKX2-5); m=4/6; ncol2=11; w=8; offset=3; strand=D; shift=6; score=0.464907; ------rmCACTCAA ; cor=; Ncor= a 0 0 0 0 0 0 1723.0 1526.0 96.0 5246.0 144.0 135.0 222.0 4819.0 4931.0 c 0 0 0 0 0 0 1024.0 1646.0 5002.0 48.0 5098.0 82.0 4319.0 120.0 165.0 g 0 0 0 0 0 0 1687.0 1318.0 24.0 76.0 49.0 61.0 62.0 217.0 98.0 t 0 0 0 0 0 0 1010.0 954.0 322.0 74.0 153.0 5166.0 841.0 288.0 250.0

MA0693.2_rc_shift2 (VDR_rc)
; oligos_7nt_mkv2_m14 versus MA0693.2_rc (VDR_rc); m=5/6; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=0.424444; --TGAACyyr----- ; cor=; Ncor= a 0 0 19.0 174.0 827.0 890.0 32.0 34.0 32.0 455.0 0 0 0 0 0 c 0 0 76.0 28.0 82.0 70.0 919.0 386.0 567.0 43.0 0 0 0 0 0 g 0 0 19.0 743.0 31.0 23.0 25.0 24.0 45.0 280.0 0 0 0 0 0 t 0 0 886.0 55.0 61.0 17.0 24.0 555.0 356.0 222.0 0 0 0 0 0

MA0478.1_shift0 (FOSL2)
; oligos_7nt_mkv2_m14 versus MA0478.1 (FOSL2); m=6/6; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=0.405699; krrTGAsTCAb---- ; cor=; Ncor= a 833.0 1525.0 2861.0 0.0 0.0 5075.0 0.0 0.0 205.0 5318.0 0.0 0 0 0 0 c 994.0 592.0 55.0 0.0 0.0 51.0 3286.0 0.0 5113.0 0.0 1399.0 0 0 0 0 g 2086.0 2707.0 2328.0 0.0 5318.0 192.0 1838.0 0.0 0.0 0.0 1933.0 0 0 0 0 t 1405.0 494.0 74.0 5318.0 0.0 0.0 194.0 5318.0 0.0 0.0 1986.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m26_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m26_shift2 (oligos_8nt_mkv2_m26oligos_8nt_mkv2_m26)
; oligos_8nt_mkv2_m26 (oligos_8nt_mkv2_m26oligos_8nt_mkv2_m26); m=0 (reference); ncol1=12; shift=2; ncol=14; --CTACAGTGTGya ; Alignment reference a 0 0 6 14 87 12 82 1 0 1 0 8 5 56 c 0 0 63 7 0 69 1 0 0 0 0 0 24 3 g 0 0 10 1 0 1 0 85 0 86 0 79 18 9 t 0 0 8 65 0 5 4 1 87 0 87 0 40 19

MA1580.1_shift1 (ZBTB32)
; oligos_8nt_mkv2_m26 versus MA1580.1 (ZBTB32); m=1/2; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=0.51084; -tGTACAGTaw--- ; cor=; Ncor= a 0 882.0 356.0 5.0 3560.0 0.0 3556.0 0.0 0.0 2390.0 1559.0 0 0 0 c 0 764.0 3.0 1.0 5.0 3560.0 3.0 3.0 4.0 109.0 213.0 0 0 0 g 0 65.0 3057.0 3.0 0.0 1.0 4.0 3562.0 0.0 723.0 215.0 0 0 0 t 0 1849.0 156.0 3563.0 0.0 0.0 8.0 6.0 3558.0 339.0 1574.0 0 0 0

MA1542.1_shift0 (OSR1)
; oligos_8nt_mkv2_m26 versus MA1542.1 (OSR1); m=2/2; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=0.420131; yGCTACyGTk---- ; cor=; Ncor= a 1028.0 448.0 0.0 4.0 4890.0 10.0 0.0 62.0 407.0 1102.0 0 0 0 0 c 1302.0 235.0 4890.0 99.0 83.0 4890.0 2103.0 4.0 612.0 545.0 0 0 0 0 g 717.0 4890.0 0.0 0.0 38.0 0.0 5.0 4890.0 504.0 1512.0 0 0 0 0 t 1843.0 17.0 18.0 4890.0 444.0 0.0 2787.0 24.0 4890.0 1731.0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m4_shift0 (dyads_m4dyads_m4)
; dyads_m4 (dyads_m4dyads_m4); m=0 (reference); ncol1=21; shift=0; ncol=21; gCkRRAAAACTGAAAATCAyR ; Alignment reference a 3 1 2 11 5 16 16 14 16 0 3 0 16 16 16 16 1 0 14 0 4 c 1 11 0 0 0 0 0 2 0 15 0 0 0 0 0 0 0 13 0 9 0 g 9 3 9 5 11 0 0 0 0 1 0 16 0 0 0 0 0 3 2 3 12 t 3 1 5 0 0 0 0 0 0 0 13 0 0 0 0 0 15 0 0 4 0

MA0517.1_rc_shift4 (STAT1::STAT2_rc)
; dyads_m4 versus MA0517.1_rc (STAT1::STAT2_rc); m=1/2; ncol2=15; w=15; offset=4; strand=R; shift=4; score=0.504326; ----rGRAAmyGAAACTra-- ; cor=; Ncor= a 0 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 0 0 c 0 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 0 0 g 0 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 0 0 t 0 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0 0 0

MA1623.1_shift4 (Stat2)
; dyads_m4 versus MA1623.1 (Stat2); m=2/2; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.477567; ----rgAAACAGAAAsw---- ; cor=; Ncor= a 0 0 0 0 1605.0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 740.0 1262.0 0 0 0 0 c 0 0 0 0 538.0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 1502.0 758.0 0 0 0 0 g 0 0 0 0 1125.0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 1180.0 591.0 0 0 0 0 t 0 0 0 0 691.0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 537.0 1348.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m6_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m6_shift0 (oligos_8nt_mkv2_m6oligos_8nt_mkv2_m6)
; oligos_8nt_mkv2_m6 (oligos_8nt_mkv2_m6oligos_8nt_mkv2_m6); m=0 (reference); ncol1=18; shift=0; ncol=18; CrTGRAAAATGAGAAAwr ; Alignment reference a 4 66 0 4 27 102 102 101 100 2 2 96 1 100 101 100 27 68 c 89 3 13 2 2 0 0 0 1 1 0 0 1 1 1 0 23 1 g 2 30 2 96 73 0 0 0 0 0 99 2 85 1 0 0 0 32 t 7 3 87 0 0 0 0 1 1 99 1 4 15 0 0 2 52 1

MA0606.1_rc_shift0 (NFAT5_rc)
; oligos_8nt_mkv2_m6 versus MA0606.1_rc (NFAT5_rc); m=1/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.489362; wrTGGAAAat-------- ; cor=; Ncor= a 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 0 0 0 0 c 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 g 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 0 0 0 0 t 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0 0 0 0 0

MA1525.1_shift0 (NFATC4)
; oligos_8nt_mkv2_m6 versus MA1525.1 (NFATC4); m=2/4; ncol2=10; w=10; offset=0; strand=D; shift=0; score=0.467277; aryGGAAAmw-------- ; cor=; Ncor= a 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 0 0 0 0 c 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 0 0 0 0 g 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 0 0 0 0 t 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0 0 0 0 0

MA0625.1_rc_shift0 (NFATC3_rc)
; oligos_8nt_mkv2_m6 versus MA0625.1_rc (NFATC3_rc); m=3/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.461271; aryGGAAAaw-------- ; cor=; Ncor= a 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 0 0 0 0 c 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 0 0 0 0 g 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 0 0 0 0 t 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0 0 0 0 0

MA0624.1_rc_shift0 (NFATC1_rc)
; oligos_8nt_mkv2_m6 versus MA0624.1_rc (NFATC1_rc); m=4/4; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.44385; aryGGAAaaw-------- ; cor=; Ncor= a 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 0 0 0 0 c 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 0 0 0 0 g 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 0 0 0 0 t 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m19_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m19_shift2 (oligos_8nt_mkv2_m19oligos_8nt_mkv2_m19)
; oligos_8nt_mkv2_m19 (oligos_8nt_mkv2_m19oligos_8nt_mkv2_m19); m=0 (reference); ncol1=12; shift=2; ncol=14; --TMACTCACTCAy ; Alignment reference a 0 0 3 17 23 0 1 0 23 0 1 0 23 1 c 0 0 3 6 0 24 0 24 0 24 0 24 0 6 g 0 0 0 0 0 0 0 0 1 0 1 0 0 1 t 0 0 18 1 1 0 23 0 0 0 22 0 1 16

MA1523.1_shift0 (MSANTD3)
; oligos_8nt_mkv2_m19 versus MA1523.1 (MSANTD3); m=1/3; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=0.474851; stmCACTCAm---- ; cor=; Ncor= a 98.0 111.0 332.0 64.0 980.0 31.0 37.0 47.0 775.0 271.0 0 0 0 0 c 269.0 211.0 272.0 723.0 0.0 896.0 7.0 862.0 140.0 568.0 0 0 0 0 g 515.0 220.0 249.0 31.0 2.0 27.0 0.0 29.0 24.0 63.0 0 0 0 0 t 117.0 456.0 145.0 180.0 16.0 45.0 954.0 60.0 59.0 96.0 0 0 0 0

MA0063.2_shift5 (NKX2-5)
; oligos_8nt_mkv2_m19 versus MA0063.2 (NKX2-5); m=2/3; ncol2=11; w=9; offset=3; strand=D; shift=5; score=0.457423; -----rmCACTCAA ; cor=; Ncor= a 0 0 0 0 0 1723.0 1526.0 96.0 5246.0 144.0 135.0 222.0 4819.0 4931.0 c 0 0 0 0 0 1024.0 1646.0 5002.0 48.0 5098.0 82.0 4319.0 120.0 165.0 g 0 0 0 0 0 1687.0 1318.0 24.0 76.0 49.0 61.0 62.0 217.0 98.0 t 0 0 0 0 0 1010.0 954.0 322.0 74.0 153.0 5166.0 841.0 288.0 250.0

MA0099.3_rc_shift0 (FOS::JUN_rc)
; oligos_8nt_mkv2_m19 versus MA0099.3_rc (FOS::JUN_rc); m=3/3; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=0.40201; krTGACTCAy---- ; cor=; Ncor= a 162.0 568.0 4.0 4.0 991.0 54.0 45.0 168.0 990.0 40.0 0 0 0 0 c 164.0 95.0 2.0 3.0 2.0 688.0 4.0 824.0 2.0 257.0 0 0 0 0 g 397.0 313.0 2.0 963.0 2.0 180.0 131.0 1.0 5.0 111.0 0 0 0 0 t 277.0 24.0 992.0 30.0 5.0 78.0 820.0 7.0 3.0 592.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m16_shift5 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m16_shift5 (oligos_8nt_mkv2_m16oligos_8nt_mkv2_m16)
; oligos_8nt_mkv2_m16 (oligos_8nt_mkv2_m16oligos_8nt_mkv2_m16); m=0 (reference); ncol1=12; shift=5; ncol=17; -----YkGAAAATsAyr ; Alignment reference a 0 0 0 0 0 2 7 1 73 73 71 73 0 1 72 3 31 c 0 0 0 0 0 52 2 0 0 0 1 0 0 46 1 19 1 g 0 0 0 0 0 0 25 72 0 0 0 0 0 26 0 15 36 t 0 0 0 0 0 19 39 0 0 0 1 0 73 0 0 36 5

MA0152.1_rc_shift5 (NFATC2_rc)
; oligos_8nt_mkv2_m16 versus MA0152.1_rc (NFATC2_rc); m=1/8; ncol2=7; w=7; offset=0; strand=R; shift=5; score=0.47265; -----TGGAAAA----- ; cor=; Ncor= a 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 0 0 0 0 g 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 0 0 0 0 t 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0 0 0 0 0

MA0625.1_rc_shift3 (NFATC3_rc)
; oligos_8nt_mkv2_m16 versus MA0625.1_rc (NFATC3_rc); m=2/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.454316; ---aryGGAAAaw---- ; cor=; Ncor= a 0 0 0 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 0 0 0 0 c 0 0 0 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 0 0 0 0 g 0 0 0 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 0 0 0 0 t 0 0 0 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0 0 0 0 0

MA1525.1_shift3 (NFATC4)
; oligos_8nt_mkv2_m16 versus MA1525.1 (NFATC4); m=3/8; ncol2=10; w=8; offset=-2; strand=D; shift=3; score=0.449878; ---aryGGAAAmw---- ; cor=; Ncor= a 0 0 0 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 0 0 0 0 c 0 0 0 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 0 0 0 0 g 0 0 0 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 0 0 0 0 t 0 0 0 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0 0 0 0 0

MA0038.2_shift8 (GFI1)
; oligos_8nt_mkv2_m16 versus MA0038.2 (GFI1); m=4/8; ncol2=12; w=9; offset=3; strand=D; shift=8; score=0.44931; --------cmAATCACd ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3668.0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 c 0 0 0 0 0 0 0 0 11575.0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 g 0 0 0 0 0 0 0 0 7376.0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 t 0 0 0 0 0 0 0 0 7527.0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0

MA0624.1_rc_shift3 (NFATC1_rc)
; oligos_8nt_mkv2_m16 versus MA0624.1_rc (NFATC1_rc); m=5/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.437408; ---aryGGAAaaw---- ; cor=; Ncor= a 0 0 0 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 0 0 0 0 c 0 0 0 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 0 0 0 0 g 0 0 0 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 0 0 0 0 t 0 0 0 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0 0 0 0 0

MA0606.1_rc_shift3 (NFAT5_rc)
; oligos_8nt_mkv2_m16 versus MA0606.1_rc (NFAT5_rc); m=6/8; ncol2=10; w=8; offset=-2; strand=R; shift=3; score=0.434815; ---wrTGGAAAat---- ; cor=; Ncor= a 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 0 0 0 c 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 0 0 0 g 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 0 0 0 t 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0 0 0 0

MA0517.1_rc_shift0 (STAT1::STAT2_rc)
; oligos_8nt_mkv2_m16 versus MA0517.1_rc (STAT1::STAT2_rc); m=7/8; ncol2=15; w=10; offset=-5; strand=R; shift=0; score=0.428557; rGRAAmyGAAACTra-- ; cor=; Ncor= a 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 156.0 411.0 0 0 c 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 84.0 77.0 0 0 g 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 230.0 63.0 0 0 t 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 150.0 69.0 0 0

MA0483.1_shift9 (Gfi1b)
; oligos_8nt_mkv2_m16 versus MA0483.1 (Gfi1b); m=8/8; ncol2=11; w=8; offset=4; strand=D; shift=9; score=0.419547; ---------aAATCwCw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 c 0 0 0 0 0 0 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 g 0 0 0 0 0 0 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 t 0 0 0 0 0 0 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m18_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m18_shift0 (oligos_8nt_mkv2_m18oligos_8nt_mkv2_m18)
; oligos_8nt_mkv2_m18 (oligos_8nt_mkv2_m18oligos_8nt_mkv2_m18); m=0 (reference); ncol1=12; shift=0; ncol=14; rsATTTsTAAAw-- ; Alignment reference a 16 3 28 0 1 0 0 0 28 23 24 7 0 0 c 0 17 0 0 0 0 15 0 0 0 2 1 0 0 g 10 7 0 0 0 0 12 0 0 5 1 2 0 0 t 2 1 0 28 27 28 1 28 0 0 1 18 0 0

MA0845.1_shift3 (FOXB1)
; oligos_8nt_mkv2_m18 versus MA0845.1 (FOXB1); m=1/1; ncol2=11; w=9; offset=3; strand=D; shift=3; score=0.460072; ---wAwGTMAAyAt ; cor=; Ncor= a 0 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 c 0 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 g 0 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 t 0 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0

One-to-n matrix alignment; reference matrix: dyads_m39_shift5 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m39_shift5 (dyads_m39dyads_m39)
; dyads_m39 (dyads_m39dyads_m39); m=0 (reference); ncol1=10; shift=5; ncol=15; -----GwGAAATAyr ; Alignment reference a 0 0 0 0 0 5 25 0 56 56 56 0 56 5 21 c 0 0 0 0 0 7 1 0 0 0 0 0 0 20 6 g 0 0 0 0 0 40 3 56 0 0 0 0 0 5 23 t 0 0 0 0 0 4 27 0 0 0 0 56 0 26 6

MA0102.4_rc_shift0 (CEBPA_rc)
; dyads_m39 versus MA0102.4_rc (CEBPA_rc); m=1/1; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.442908; wwaTTGTGCAATmw- ; cor=; Ncor= a 24153.0 20623.0 50992.0 1411.0 1092.0 9787.0 6308.0 2053.0 10928.0 75354.0 76586.0 4573.0 28452.0 24323.0 0 c 16045.0 12932.0 7312.0 1381.0 340.0 1583.0 6751.0 678.0 57887.0 2365.0 722.0 12772.0 20062.0 15847.0 0 g 17147.0 17396.0 16193.0 1034.0 5655.0 61538.0 3535.0 75124.0 936.0 282.0 826.0 7284.0 12801.0 14823.0 0 t 21658.0 28052.0 4506.0 75177.0 71916.0 6095.0 62409.0 1148.0 9252.0 1002.0 869.0 54374.0 17688.0 24010.0 0

One-to-n matrix alignment; reference matrix: dyads_m24_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m24_shift0 (dyads_m24dyads_m24)
; dyads_m24 (dyads_m24dyads_m24); m=0 (reference); ncol1=18; shift=0; ncol=18; ygRRAAAmsTGAAAAwyr ; Alignment reference a 3 8 25 24 32 34 33 13 3 3 0 33 33 34 34 20 1 12 c 12 0 0 0 2 0 1 20 14 0 0 0 0 0 0 0 10 0 g 2 20 9 9 0 0 0 1 15 0 34 1 1 0 0 0 6 21 t 17 6 0 1 0 0 0 0 2 31 0 0 0 0 0 14 17 1

MA1118.1_shift3 (SIX1)
; dyads_m24 versus MA1118.1 (SIX1); m=1/2; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.441277; ---GwAACCTGAkm---- ; cor=; Ncor= a 0 0 0 96.0 400.0 1049.0 1076.0 43.0 112.0 51.0 48.0 1070.0 146.0 546.0 0 0 0 0 c 0 0 0 43.0 77.0 18.0 8.0 959.0 871.0 46.0 9.0 7.0 179.0 360.0 0 0 0 0 g 0 0 0 859.0 90.0 6.0 10.0 12.0 31.0 30.0 1025.0 11.0 289.0 73.0 0 0 0 0 t 0 0 0 110.0 541.0 35.0 14.0 94.0 94.0 981.0 26.0 20.0 494.0 129.0 0 0 0 0

MA0606.1_rc_shift7 (NFAT5_rc)
; dyads_m24 versus MA0606.1_rc (NFAT5_rc); m=2/2; ncol2=10; w=10; offset=7; strand=R; shift=7; score=0.40924; -------wrTGGAAAat- ; cor=; Ncor= a 0 0 0 0 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 0 c 0 0 0 0 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 0 g 0 0 0 0 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 0 t 0 0 0 0 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0 0

One-to-n matrix alignment; reference matrix: dyads_m29_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m29_shift2 (dyads_m29dyads_m29)
; dyads_m29 (dyads_m29dyads_m29); m=0 (reference); ncol1=12; shift=2; ncol=14; --AmTGArAAAyry ; Alignment reference a 0 0 139 98 0 2 163 55 163 162 163 14 104 6 c 0 0 4 43 9 0 0 0 0 0 0 103 6 87 g 0 0 14 19 0 160 0 108 0 0 0 0 48 5 t 0 0 6 3 154 1 0 0 0 1 0 46 5 65

MA1549.1_shift0 (POU6F1(var.2))
; dyads_m29 versus MA1549.1 (POU6F1(var.2)); m=1/2; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=0.42953; rTAATGAGst---- ; cor=; Ncor= a 2756.0 164.0 6413.0 6413.0 0.0 67.0 6413.0 314.0 1972.0 1577.0 0 0 0 0 c 416.0 273.0 179.0 0.0 0.0 206.0 96.0 851.0 3065.0 1238.0 0 0 0 0 g 1930.0 10.0 255.0 0.0 298.0 5799.0 0.0 6413.0 3348.0 1534.0 0 0 0 0 t 1312.0 6413.0 0.0 0.0 6413.0 615.0 411.0 1855.0 1462.0 2064.0 0 0 0 0

MA0033.2_shift6 (FOXL1)
; dyads_m29 versus MA0033.2 (FOXL1); m=2/2; ncol2=7; w=7; offset=4; strand=D; shift=6; score=0.40889; ------rTAAACA- ; cor=; Ncor= a 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 c 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 g 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 t 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0

One-to-n matrix alignment; reference matrix: oligos_8nt_mkv2_m21_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_8nt_mkv2_m21_shift0 (oligos_8nt_mkv2_m21oligos_8nt_mkv2_m21)
; oligos_8nt_mkv2_m21 (oligos_8nt_mkv2_m21oligos_8nt_mkv2_m21); m=0 (reference); ncol1=12; shift=0; ncol=14; yTGTAGAACAkw-- ; Alignment reference a 1 0 0 0 32 0 32 32 0 32 2 14 0 0 c 16 0 0 0 0 1 0 0 30 0 0 1 0 0 g 4 1 32 0 0 31 0 0 0 0 10 1 0 0 t 11 31 0 32 0 0 0 0 2 0 20 16 0 0

MA0868.2_shift4 (SOX8)
; oligos_8nt_mkv2_m21 versus MA0868.2 (SOX8); m=1/1; ncol2=10; w=8; offset=4; strand=D; shift=4; score=0.416451; ----agAACAATrg ; cor=; Ncor= a 0 0 0 0 1827.0 740.0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 300.0 c 0 0 0 0 1124.0 414.0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 421.0 g 0 0 0 0 854.0 1827.0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 912.0 t 0 0 0 0 724.0 571.0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 193.0

One-to-n matrix alignment; reference matrix: dyads_m34_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m34_shift0 (dyads_m34dyads_m34)
; dyads_m34 (dyads_m34dyads_m34); m=0 (reference); ncol1=15; shift=0; ncol=15; ssACGcrsssCCGvs ; Alignment reference a 1 4 15 0 0 3 8 2 2 2 3 0 0 6 2 c 6 7 3 21 1 11 4 7 7 7 15 19 0 6 8 g 10 7 2 0 20 5 7 9 11 9 3 2 21 7 8 t 4 3 1 0 0 2 2 3 1 3 0 0 0 2 3

MA0259.1_rc_shift0 (ARNT::HIF1A_rc)
; dyads_m34 versus MA0259.1_rc (ARNT::HIF1A_rc); m=1/1; ncol2=8; w=8; offset=0; strand=R; shift=0; score=0.412867; gCACGTvb------- ; cor=; Ncor= a 15.0 0.0 104.0 0.0 1.0 1.0 31.0 0.0 0 0 0 0 0 0 0 c 20.0 104.0 0.0 104.0 0.0 23.0 34.0 49.0 0 0 0 0 0 0 0 g 51.0 0.0 0.0 0.0 103.0 2.0 29.0 28.0 0 0 0 0 0 0 0 t 18.0 0.0 0.0 0.0 0.0 78.0 10.0 27.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift0 (oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3 (oligos_6nt_mkv2_m3oligos_6nt_mkv2_m3); m=0 (reference); ncol1=14; shift=0; ncol=14; hmarCAGCTGTCwb ; Alignment reference a 10 12 20 23 0 36 0 1 0 0 2 0 10 4 c 9 11 8 1 36 0 1 34 0 0 3 25 5 14 g 7 7 5 10 0 0 35 1 0 36 1 4 7 9 t 10 6 3 2 0 0 0 0 36 0 30 7 14 9
MA0832.1_rc_shift0 (Tcf21_rc)				; oligos_6nt_mkv2_m3 versus MA0832.1_rc (Tcf21_rc); m=1/36; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.896496; ryAACAGCTGTTry ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0
MA1641.1_shift1 (MYF5)				; oligos_6nt_mkv2_m3 versus MA1641.1 (MYF5); m=2/36; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.821378; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_shift1 (Ptf1a(var.2))				; oligos_6nt_mkv2_m3 versus MA1619.1 (Ptf1a(var.2)); m=3/36; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.811646; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA1485.1_shift0 (FERD3L)				; oligos_6nt_mkv2_m3 versus MA1485.1 (FERD3L); m=4/36; ncol2=14; w=14; offset=0; strand=D; shift=0; score= 0.8046; GyrmCAGCTGTyAC ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0
MA1621.1_shift0 (Rbpjl)				; oligos_6nt_mkv2_m3 versus MA1621.1 (Rbpjl); m=5/36; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.803541; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0
MA0500.2_rc_shift1 (MYOG_rc)				; oligos_6nt_mkv2_m3 versus MA0500.2_rc (MYOG_rc); m=6/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.775788; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0499.2_shift1 (MYOD1)				; oligos_6nt_mkv2_m3 versus MA0499.2 (MYOD1); m=7/36; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.773892; -cwgCACCTGTymy ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0
MA1618.1_rc_shift0 (Ptf1a_rc)				; oligos_6nt_mkv2_m3 versus MA1618.1_rc (Ptf1a_rc); m=8/36; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.753933; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; oligos_6nt_mkv2_m3 versus MA0521.1_rc (Tcf12_rc); m=9/36; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.725763; -cwsCAGCTGYy-- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; oligos_6nt_mkv2_m3 versus MA1467.1 (ATOH1(var.2)); m=10/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.700834; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0
MA0745.2_shift1 (SNAI2)				; oligos_6nt_mkv2_m3 versus MA0745.2 (SNAI2); m=11/36; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.698772; -aygCACCTGTmry ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0
MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)				; oligos_6nt_mkv2_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.697995; -rmaCAGGTGtky- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; oligos_6nt_mkv2_m3 versus MA0796.1_rc (TGIF1_rc); m=13/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.676259; -TGACAGCTGTCA- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0
MA1571.1_rc_shift1 (TGIF2LX_rc)				; oligos_6nt_mkv2_m3 versus MA1571.1_rc (TGIF2LX_rc); m=14/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.674371; -TGACAgcTGTCA- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA1123.2_shift0 (TWIST1)				; oligos_6nt_mkv2_m3 versus MA1123.2 (TWIST1); m=15/36; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.666466; awwCCAGATGtbt- ; cor=; Ncor= a 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 6823.0 0 c 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 6561.0 0 g 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 6213.0 0 t 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0 7736.0 0
MA1472.1_shift2 (BHLHA15(var.2))				; oligos_6nt_mkv2_m3 versus MA1472.1 (BHLHA15(var.2)); m=16/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.665255; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA0665.1_rc_shift2 (MSC_rc)				; oligos_6nt_mkv2_m3 versus MA0665.1_rc (MSC_rc); m=17/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.663453; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0
MA1572.1_rc_shift1 (TGIF2LY_rc)				; oligos_6nt_mkv2_m3 versus MA1572.1_rc (TGIF2LY_rc); m=18/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.660823; -TGACAgcTGTCA- ; cor=; Ncor= a 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_rc_shift1 (TGIF2_rc)				; oligos_6nt_mkv2_m3 versus MA0797.1_rc (TGIF2_rc); m=19/36; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.660534; -TGACAsCTGTCA- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0
MA0667.1_shift2 (MYF6)				; oligos_6nt_mkv2_m3 versus MA0667.1 (MYF6); m=20/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.64302; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0
MA0816.1_shift2 (Ascl2)				; oligos_6nt_mkv2_m3 versus MA0816.1 (Ascl2); m=21/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.63897; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0691.1_shift2 (TFAP4)				; oligos_6nt_mkv2_m3 versus MA0691.1 (TFAP4); m=22/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.638611; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; oligos_6nt_mkv2_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.630392; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0
MA0783.1_shift1 (PKNOX2)				; oligos_6nt_mkv2_m3 versus MA0783.1 (PKNOX2); m=24/36; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.626524; -TGACAGsTGTCA- ; cor=; Ncor= a 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA0091.1_shift0 (TAL1::TCF3)				; oligos_6nt_mkv2_m3 versus MA0091.1 (TAL1::TCF3); m=25/36; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.626461; mgAmCAKMTGkT-- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0
MA1100.2_shift2 (ASCL1)				; oligos_6nt_mkv2_m3 versus MA1100.2 (ASCL1); m=26/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.618571; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA0048.2_shift2 (NHLH1)				; oligos_6nt_mkv2_m3 versus MA0048.2 (NHLH1); m=27/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.567837; --cGCAGCTGCk-- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0
MA0820.1_shift2 (FIGLA)				; oligos_6nt_mkv2_m3 versus MA0820.1 (FIGLA); m=28/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.565892; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0
MA1638.1_shift2 (HAND2)				; oligos_6nt_mkv2_m3 versus MA1638.1 (HAND2); m=29/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.514735; --amCAGATGby-- ; cor=; Ncor= a 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0
MA1570.1_shift2 (TFAP4(var.2))				; oligos_6nt_mkv2_m3 versus MA1570.1 (TFAP4(var.2)); m=30/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.506733; --ahCAyrTGkt-- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0
MA1559.1_rc_shift2 (SNAI3_rc)				; oligos_6nt_mkv2_m3 versus MA1559.1_rc (SNAI3_rc); m=31/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.505447; --trCACCTGyt-- ; cor=; Ncor= a 0 0 553.0 3161.0 30.0 6248.0 0.0 43.0 3.0 35.0 183.0 1110.0 0 0 c 0 0 1569.0 1701.0 6248.0 28.0 6248.0 6248.0 34.0 0.0 2331.0 1525.0 0 0 g 0 0 688.0 6248.0 0.0 12.0 18.0 29.0 0.0 6248.0 0.0 661.0 0 0 t 0 0 4680.0 432.0 94.0 0.0 0.0 118.0 6248.0 23.0 3917.0 2952.0 0 0
MA0100.3_shift2 (MYB)				; oligos_6nt_mkv2_m3 versus MA0100.3 (MYB); m=32/36; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.50294; --mbCAACTGhm-- ; cor=; Ncor= a 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 0 0 c 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 0 0 g 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 0 0 t 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0 0 0
MA1558.1_rc_shift2 (SNAI1_rc)				; oligos_6nt_mkv2_m3 versus MA1558.1_rc (SNAI1_rc); m=33/36; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.500774; --yrCACCTGyh-- ; cor=; Ncor= a 0 0 6356.0 9044.0 311.0 19982.0 28.0 306.0 568.0 340.0 3518.0 5112.0 0 0 c 0 0 9894.0 5306.0 19982.0 42.0 19982.0 19982.0 91.0 275.0 12989.0 6410.0 0 0 g 0 0 4592.0 10938.0 0.0 0.0 5.0 517.0 297.0 19982.0 501.0 3187.0 0 0 t 0 0 10088.0 1639.0 706.0 38.0 72.0 1766.0 19982.0 446.0 6993.0 5274.0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; oligos_6nt_mkv2_m3 versus MA0774.1_rc (MEIS2_rc); m=34/36; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.45998; ------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0
MA0775.1_rc_shift6 (MEIS3_rc)				; oligos_6nt_mkv2_m3 versus MA0775.1_rc (MEIS3_rc); m=35/36; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.437753; ------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0
MA0498.2_rc_shift7 (MEIS1_rc)				; oligos_6nt_mkv2_m3 versus MA0498.2_rc (MEIS1_rc); m=36/36; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.40662; -------cTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m7_shift3 (oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7)				; oligos_8nt_mkv2_m7 (oligos_8nt_mkv2_m7oligos_8nt_mkv2_m7); m=0 (reference); ncol1=12; shift=3; ncol=16; ---rmAGCAGGTGst- ; Alignment reference a 0 0 0 8 5 16 0 0 15 0 0 0 0 2 2 0 c 0 0 0 3 8 1 0 16 1 0 0 1 1 7 4 0 g 0 0 0 5 3 0 17 0 1 17 17 0 16 5 1 0 t 0 0 0 1 1 0 0 1 0 0 0 16 0 3 10 0
MA1648.1_rc_shift4 (TCF12(var.2)_rc)				; oligos_8nt_mkv2_m7 versus MA1648.1_rc (TCF12(var.2)_rc); m=1/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score= 0.8364; ----srGCAGGTGss- ; cor=; Ncor= a 0 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 c 0 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 g 0 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 t 0 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0
MA0522.3_rc_shift4 (TCF3_rc)				; oligos_8nt_mkv2_m7 versus MA0522.3_rc (TCF3_rc); m=2/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.828613; ----ssGCAGGTGbs- ; cor=; Ncor= a 0 0 0 0 6432.0 7233.0 1237.0 492.0 27539.0 283.0 950.0 375.0 705.0 4528.0 6240.0 0 c 0 0 0 0 9222.0 8025.0 987.0 28642.0 1339.0 2652.0 1362.0 1574.0 708.0 9432.0 8539.0 0 g 0 0 0 0 10122.0 8727.0 28742.0 1038.0 2003.0 27199.0 28640.0 396.0 29379.0 9269.0 10212.0 0 t 0 0 0 0 5485.0 7276.0 295.0 1089.0 380.0 1127.0 309.0 28916.0 469.0 8032.0 6270.0 0
MA1631.1_rc_shift3 (ASCL1(var.2)_rc)				; oligos_8nt_mkv2_m7 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.823048; ---gsrGCAGGTGchg ; cor=; Ncor= a 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 c 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 g 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 t 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0
MA0830.2_rc_shift3 (TCF4_rc)				; oligos_8nt_mkv2_m7 versus MA0830.2_rc (TCF4_rc); m=4/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.804376; ---ssggCAGGTGccg ; cor=; Ncor= a 0 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 c 0 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 g 0 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 t 0 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0
MA0103.3_rc_shift4 (ZEB1_rc)				; oligos_8nt_mkv2_m7 versus MA0103.3_rc (ZEB1_rc); m=5/33; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.771244; ----sssCAGGTGss- ; cor=; Ncor= a 0 0 0 0 3856.0 3153.0 3408.0 129.0 19269.0 30.0 122.0 1.0 662.0 4715.0 3692.0 0 c 0 0 0 0 5828.0 6601.0 5178.0 19381.0 355.0 649.0 97.0 223.0 158.0 5179.0 5228.0 0 g 0 0 0 0 6955.0 6117.0 9561.0 178.0 501.0 19257.0 19878.0 0.0 19195.0 5550.0 7998.0 0 t 0 0 0 0 3490.0 4258.0 1982.0 441.0 4.0 193.0 32.0 19905.0 114.0 4685.0 3211.0 0
MA1558.1_shift5 (SNAI1)				; oligos_8nt_mkv2_m7 versus MA1558.1 (SNAI1); m=6/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.729222; -----drCAGGTGyr- ; cor=; Ncor= a 0 0 0 0 0 5274.0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 1639.0 10088.0 0 c 0 0 0 0 0 3187.0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 10938.0 4592.0 0 g 0 0 0 0 0 6410.0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 5306.0 9894.0 0 t 0 0 0 0 0 5112.0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 9044.0 6356.0 0
MA1559.1_shift5 (SNAI3)				; oligos_8nt_mkv2_m7 versus MA1559.1 (SNAI3); m=7/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.696687; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_8nt_mkv2_m7 versus MA0745.2_rc (SNAI2_rc); m=8/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.692592; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_8nt_mkv2_m7 versus MA0820.1_rc (FIGLA_rc); m=9/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.681132; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_8nt_mkv2_m7 versus MA0499.2_rc (MYOD1_rc); m=10/33; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.664289; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0
MA0816.1_rc_shift5 (Ascl2_rc)				; oligos_8nt_mkv2_m7 versus MA0816.1_rc (Ascl2_rc); m=11/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.657218; -----rrCAGCTGyt- ; cor=; Ncor= a 0 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 c 0 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 g 0 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 t 0 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0
MA1621.1_rc_shift3 (Rbpjl_rc)				; oligos_8nt_mkv2_m7 versus MA1621.1_rc (Rbpjl_rc); m=12/33; ncol2=14; w=12; offset=0; strand=R; shift=3; score=0.656642; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0
MA1628.1_shift2 (Zic1::Zic2)				; oligos_8nt_mkv2_m7 versus MA1628.1 (Zic1::Zic2); m=13/33; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.651814; --cvCAGCAGGsr--- ; cor=; Ncor= a 0 0 2072.0 3057.0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 2429.0 2524.0 0 0 0 c 0 0 4620.0 2589.0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 2516.0 2154.0 0 0 0 g 0 0 2206.0 2773.0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 2775.0 3506.0 0 0 0 t 0 0 994.0 1473.0 163.0 4.0 74.0 428.0 4.0 90.0 124.0 2172.0 1708.0 0 0 0
MA0059.1_shift4 (MAX::MYC)				; oligos_8nt_mkv2_m7 versus MA0059.1 (MAX::MYC); m=14/33; ncol2=11; w=11; offset=1; strand=D; shift=4; score=0.642348; ----rAsCACGTGGt- ; cor=; Ncor= a 0 0 0 0 7.0 15.0 2.0 1.0 21.0 0.0 1.0 0.0 0.0 1.0 3.0 0 c 0 0 0 0 1.0 1.0 9.0 20.0 0.0 20.0 0.0 1.0 0.0 1.0 5.0 0 g 0 0 0 0 9.0 4.0 9.0 0.0 0.0 0.0 20.0 0.0 21.0 18.0 0.0 0 t 0 0 0 0 4.0 1.0 1.0 0.0 0.0 1.0 0.0 20.0 0.0 1.0 13.0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_8nt_mkv2_m7 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/33; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.640232; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0
MA1100.2_shift5 (ASCL1)				; oligos_8nt_mkv2_m7 versus MA1100.2 (ASCL1); m=16/33; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.637082; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0
MA1585.1_shift3 (ZKSCAN1)				; oligos_8nt_mkv2_m7 versus MA1585.1 (ZKSCAN1); m=17/33; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.619052; ---AyAGTAGGtg--- ; cor=; Ncor= a 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 0 0 0 c 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 0 0 0 g 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 0 0 0 t 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0 0 0 0
MA0696.1_rc_shift2 (ZIC1_rc)				; oligos_8nt_mkv2_m7 versus MA0696.1_rc (ZIC1_rc); m=18/33; ncol2=14; w=12; offset=-1; strand=R; shift=2; score=0.618373; --CrCAGCrGGGGGTc ; cor=; Ncor= a 0 0 2725.0 16190.0 1.0 27084.0 6735.0 14.0 10313.0 14.0 7.0 927.0 281.0 125.0 23.0 8960.0 c 0 0 34431.0 1690.0 34649.0 5531.0 439.0 31995.0 0.0 10.0 4.0 327.0 204.0 58.0 7408.0 25702.0 g 0 0 520.0 7693.0 24.0 1757.0 27426.0 45.0 18412.0 29532.0 29399.0 25527.0 29217.0 28949.0 2660.0 3934.0 t 0 0 35.0 3121.0 73.0 1215.0 23.0 2156.0 22.0 185.0 0.0 2606.0 1264.0 836.0 22722.0 1113.0
MA1629.1_shift0 (Zic2)				; oligos_8nt_mkv2_m7 versus MA1629.1 (Zic2); m=19/33; ncol2=14; w=11; offset=-3; strand=D; shift=0; score=0.614544; mkCaCAGCAGGrrg-- ; cor=; Ncor= a 3145.0 2450.0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 3060.0 3638.0 2333.0 0 0 c 3507.0 1755.0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 1476.0 1661.0 2168.0 0 0 g 2761.0 3821.0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 4911.0 4979.0 5314.0 0 0 t 2506.0 3893.0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0 2472.0 1641.0 2104.0 0 0
MA0048.2_rc_shift5 (NHLH1_rc)				; oligos_8nt_mkv2_m7 versus MA0048.2_rc (NHLH1_rc); m=20/33; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.605599; -----mGCAGCTGCg- ; cor=; Ncor= a 0 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 c 0 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 g 0 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 t 0 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0
MA0500.2_rc_shift4 (MYOG_rc)				; oligos_8nt_mkv2_m7 versus MA0500.2_rc (MYOG_rc); m=21/33; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.600879; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0
MA0697.1_rc_shift1 (ZIC3_rc)				; oligos_8nt_mkv2_m7 versus MA0697.1_rc (ZIC3_rc); m=22/33; ncol2=15; w=12; offset=-2; strand=R; shift=1; score=0.562478; -dCrCaGCRGGGGGTc ; cor=; Ncor= a 0 53.0 23.0 74.0 3.0 163.0 29.0 2.0 61.0 0.0 0.0 19.0 7.0 4.0 0.0 69.0 c 0 13.0 214.0 13.0 225.0 53.0 6.0 217.0 0.0 0.0 0.0 0.0 3.0 0.0 43.0 163.0 g 0 79.0 2.0 89.0 0.0 26.0 178.0 5.0 142.0 206.0 209.0 188.0 204.0 203.0 32.0 50.0 t 0 56.0 3.0 24.0 3.0 18.0 4.0 22.0 0.0 0.0 0.0 22.0 7.0 7.0 163.0 20.0
MA0744.2_shift0 (SCRT2)				; oligos_8nt_mkv2_m7 versus MA0744.2 (SCRT2); m=23/33; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.551245; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0
MA0521.1_shift5 (Tcf12)				; oligos_8nt_mkv2_m7 versus MA0521.1 (Tcf12); m=24/33; ncol2=11; w=10; offset=2; strand=D; shift=5; score=0.550149; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0
MA0743.2_shift0 (SCRT1)				; oligos_8nt_mkv2_m7 versus MA0743.2 (SCRT1); m=25/33; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.54903; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0
MA0622.1_shift6 (Mlxip)				; oligos_8nt_mkv2_m7 versus MA0622.1 (Mlxip); m=26/33; ncol2=8; w=8; offset=3; strand=D; shift=6; score=0.472104; ------bCACGTGk-- ; cor=; Ncor= a 0 0 0 0 0 0 53.0 0.0 999.0 0.0 0.0 0.0 0.0 188.0 0 0 c 0 0 0 0 0 0 263.0 999.0 0.0 999.0 0.0 0.0 0.0 63.0 0 0 g 0 0 0 0 0 0 421.0 0.0 0.0 0.0 999.0 0.0 999.0 250.0 0 0 t 0 0 0 0 0 0 263.0 0.0 0.0 0.0 0.0 999.0 0.0 499.0 0 0
MA0807.1_shift8 (TBX5)				; oligos_8nt_mkv2_m7 versus MA0807.1 (TBX5); m=27/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.461638; --------AGGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1804.0 235.0 0.0 45.0 27.0 162.0 126.0 1804.0 c 0 0 0 0 0 0 0 0 89.0 190.0 0.0 131.0 0.0 225.0 616.0 76.0 g 0 0 0 0 0 0 0 0 409.0 1804.0 1804.0 166.0 1804.0 201.0 1804.0 343.0 t 0 0 0 0 0 0 0 0 207.0 133.0 28.0 1804.0 0.0 1804.0 915.0 283.0
MA0806.1_shift8 (TBX4)				; oligos_8nt_mkv2_m7 versus MA0806.1 (TBX4); m=28/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.457829; --------AGGTGTgA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 18646.0 3082.0 38.0 0.0 0.0 1551.0 1355.0 18646.0 c 0 0 0 0 0 0 0 0 437.0 2328.0 189.0 1644.0 0.0 2859.0 5396.0 588.0 g 0 0 0 0 0 0 0 0 2353.0 18646.0 18646.0 191.0 18646.0 304.0 18646.0 1733.0 t 0 0 0 0 0 0 0 0 1283.0 1162.0 33.0 18646.0 0.0 18646.0 8384.0 965.0
MA1567.1_shift7 (TBX6)				; oligos_8nt_mkv2_m7 versus MA1567.1 (TBX6); m=29/33; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.428428; -------ragGTGTkA ; cor=; Ncor= a 0 0 0 0 0 0 0 2998.0 11087.0 1882.0 58.0 44.0 14.0 552.0 1430.0 11087.0 c 0 0 0 0 0 0 0 1630.0 1173.0 2913.0 63.0 1002.0 0.0 3053.0 4876.0 652.0 g 0 0 0 0 0 0 0 4003.0 3347.0 11087.0 11087.0 0.0 11087.0 320.0 11087.0 2251.0 t 0 0 0 0 0 0 0 2456.0 2157.0 1058.0 0.0 11087.0 12.0 11087.0 5964.0 713.0
MA0803.1_shift8 (TBX15)				; oligos_8nt_mkv2_m7 versus MA0803.1 (TBX15); m=30/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.422932; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10502.0 458.0 19.0 61.0 0.0 140.0 44.0 10502.0 c 0 0 0 0 0 0 0 0 74.0 101.0 7.0 175.0 8.0 435.0 454.0 71.0 g 0 0 0 0 0 0 0 0 664.0 10502.0 10502.0 245.0 10502.0 324.0 10502.0 306.0 t 0 0 0 0 0 0 0 0 112.0 103.0 0.0 10502.0 0.0 10502.0 937.0 96.0
MA0801.1_shift8 (MGA)				; oligos_8nt_mkv2_m7 versus MA0801.1 (MGA); m=31/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.418054; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 30489.0 4310.0 16.0 12.0 14.0 1042.0 689.0 30489.0 c 0 0 0 0 0 0 0 0 1151.0 3737.0 509.0 3534.0 1.0 3089.0 1753.0 110.0 g 0 0 0 0 0 0 0 0 8873.0 30489.0 30489.0 96.0 30489.0 381.0 30489.0 920.0 t 0 0 0 0 0 0 0 0 4160.0 1929.0 104.0 30489.0 11.0 30489.0 6465.0 274.0
MA0805.1_shift8 (TBX1)				; oligos_8nt_mkv2_m7 versus MA0805.1 (TBX1); m=32/33; ncol2=8; w=7; offset=5; strand=D; shift=8; score=0.414274; --------AGGTGTGA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 11931.0 1560.0 0.0 28.0 0.0 142.0 141.0 11931.0 c 0 0 0 0 0 0 0 0 113.0 711.0 0.0 214.0 5.0 613.0 720.0 33.0 g 0 0 0 0 0 0 0 0 1007.0 11931.0 11931.0 141.0 11931.0 109.0 11931.0 18.0 t 0 0 0 0 0 0 0 0 564.0 669.0 0.0 11931.0 0.0 11931.0 1039.0 0.0
MA1566.1_shift7 (TBX3)				; oligos_8nt_mkv2_m7 versus MA1566.1 (TBX3); m=33/33; ncol2=10; w=8; offset=4; strand=D; shift=7; score=0.406554; -------ragGTGTsa ; cor=; Ncor= a 0 0 0 0 0 0 0 644.0 2544.0 427.0 6.0 16.0 0.0 115.0 170.0 2544.0 c 0 0 0 0 0 0 0 399.0 481.0 862.0 45.0 735.0 0.0 634.0 1471.0 410.0 g 0 0 0 0 0 0 0 1003.0 1207.0 2544.0 2544.0 0.0 2544.0 155.0 2544.0 947.0 t 0 0 0 0 0 0 0 497.0 760.0 302.0 0.0 2544.0 0.0 2544.0 1112.0 484.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m3_shift0 (dyads_m3dyads_m3)				; dyads_m3 (dyads_m3dyads_m3); m=0 (reference); ncol1=15; shift=0; ncol=15; rmArCAGCTGTCwyy ; Alignment reference a 8 6 20 13 0 22 0 1 0 0 0 0 7 3 5 c 3 10 2 1 22 0 1 20 0 0 2 17 5 9 7 g 6 4 0 7 0 0 21 1 0 22 0 3 2 4 4 t 5 2 0 1 0 0 0 0 22 0 20 2 8 6 6
MA0832.1_rc_shift0 (Tcf21_rc)				; dyads_m3 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.82518; ryAACAGCTGTTry- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA1485.1_shift0 (FERD3L)				; dyads_m3 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.747264; GyrmCAGCTGTyAC- ; cor=; Ncor= a 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA1641.1_rc_shift1 (MYF5_rc)				; dyads_m3 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.727563; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1621.1_shift0 (Rbpjl)				; dyads_m3 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.720817; svmaCACCTGtsyc- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0
MA1619.1_shift1 (Ptf1a(var.2))				; dyads_m3 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.716077; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0499.2_shift1 (MYOD1)				; dyads_m3 versus MA0499.2 (MYOD1); m=6/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.706549; -cwgCACCTGTymy- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0500.2_rc_shift1 (MYOG_rc)				; dyads_m3 versus MA0500.2_rc (MYOG_rc); m=7/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.690954; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1618.1_rc_shift0 (Ptf1a_rc)				; dyads_m3 versus MA1618.1_rc (Ptf1a_rc); m=8/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.690205; dmaaCATCTGtkh-- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; dyads_m3 versus MA0521.1_rc (Tcf12_rc); m=9/29; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.650243; -cwsCAGCTGYy--- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; dyads_m3 versus MA1467.1 (ATOH1(var.2)); m=10/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.647487; --AACAGCTGTY--- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0
MA0745.2_shift1 (SNAI2)				; dyads_m3 versus MA0745.2 (SNAI2); m=11/29; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.625494; -aygCACCTGTmry- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)				; dyads_m3 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=12/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.621109; -rmaCAGGTGtky-- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0665.1_rc_shift2 (MSC_rc)				; dyads_m3 versus MA0665.1_rc (MSC_rc); m=13/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.613156; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; dyads_m3 versus MA1472.1 (BHLHA15(var.2)); m=14/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.602962; --avCAGCTGyy--- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA0667.1_shift2 (MYF6)				; dyads_m3 versus MA0667.1 (MYF6); m=15/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.597259; --AACArCTGTY--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; dyads_m3 versus MA0796.1_rc (TGIF1_rc); m=16/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.587159; -TGACAGCTGTCA-- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0
MA0816.1_shift2 (Ascl2)				; dyads_m3 versus MA0816.1 (Ascl2); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.586559; --arCAGCTGyy--- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA0091.1_shift0 (TAL1::TCF3)				; dyads_m3 versus MA0091.1 (TAL1::TCF3); m=18/29; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.585506; mgAmCAKMTGkT--- ; cor=; Ncor= a 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0
MA1571.1_rc_shift1 (TGIF2LX_rc)				; dyads_m3 versus MA1571.1_rc (TGIF2LX_rc); m=19/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.585441; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0
MA0691.1_shift2 (TFAP4)				; dyads_m3 versus MA0691.1 (TFAP4); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.581097; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0797.1_rc_shift1 (TGIF2_rc)				; dyads_m3 versus MA0797.1_rc (TGIF2_rc); m=21/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.574553; -TGACAsCTGTCA-- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA1572.1_shift1 (TGIF2LY)				; dyads_m3 versus MA1572.1 (TGIF2LY); m=22/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.573539; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; dyads_m3 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.554866; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA1100.2_shift2 (ASCL1)				; dyads_m3 versus MA1100.2 (ASCL1); m=24/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.553419; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0820.1_shift2 (FIGLA)				; dyads_m3 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.516132; --wmCACCTGkw--- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0048.2_rc_shift2 (NHLH1_rc)				; dyads_m3 versus MA0048.2_rc (NHLH1_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.502625; --mGCAGCTGCg--- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA1570.1_shift2 (TFAP4(var.2))				; dyads_m3 versus MA1570.1 (TFAP4(var.2)); m=27/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.466888; --ahCAyrTGkt--- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; dyads_m3 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.444323; ------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0
MA0775.1_rc_shift6 (MEIS3_rc)				; dyads_m3 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.429033; ------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2 (oligos_6nt_mkv2_m2oligos_6nt_mkv2_m2); m=0 (reference); ncol1=14; shift=2; ncol=18; --grgACAGCTGCtkm-- ; Alignment reference a 0 0 10 13 9 39 1 42 0 0 0 0 3 7 7 13 0 0 c 0 0 10 10 5 0 41 0 0 41 0 0 36 4 9 12 0 0 g 0 0 15 12 27 3 0 0 41 1 0 42 1 5 15 8 0 0 t 0 0 7 7 1 0 0 0 1 0 42 0 2 26 11 9 0 0
MA0499.2_rc_shift2 (MYOD1_rc)				; oligos_6nt_mkv2_m2 versus MA0499.2_rc (MYOD1_rc); m=1/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.813168; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0
MA0832.1_shift2 (Tcf21)				; oligos_6nt_mkv2_m2 versus MA0832.1 (Tcf21); m=2/29; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.812548; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0
MA0500.2_rc_shift3 (MYOG_rc)				; oligos_6nt_mkv2_m2 versus MA0500.2_rc (MYOG_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.772436; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA1641.1_shift3 (MYF5)				; oligos_6nt_mkv2_m2 versus MA1641.1 (MYF5); m=4/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.753752; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA1485.1_rc_shift2 (FERD3L_rc)				; oligos_6nt_mkv2_m2 versus MA1485.1_rc (FERD3L_rc); m=5/29; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.751428; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0
MA1619.1_shift3 (Ptf1a(var.2))				; oligos_6nt_mkv2_m2 versus MA1619.1 (Ptf1a(var.2)); m=6/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.749862; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA0521.1_shift4 (Tcf12)				; oligos_6nt_mkv2_m2 versus MA0521.1 (Tcf12); m=7/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.737082; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0
MA1621.1_rc_shift2 (Rbpjl_rc)				; oligos_6nt_mkv2_m2 versus MA1621.1_rc (Rbpjl_rc); m=8/29; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.729322; --grsaCAGGTGtkbs-- ; cor=; Ncor= a 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 0 c 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 0 g 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 0 t 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0 0
MA0745.2_rc_shift2 (SNAI2_rc)				; oligos_6nt_mkv2_m2 versus MA0745.2_rc (SNAI2_rc); m=9/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.720034; --rykACAGGTGcrt--- ; cor=; Ncor= a 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 0 c 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 0 g 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 0 t 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0 0
MA1618.1_shift3 (Ptf1a)				; oligos_6nt_mkv2_m2 versus MA1618.1 (Ptf1a); m=10/29; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.690908; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0
MA1631.1_shift3 (ASCL1(var.2))				; oligos_6nt_mkv2_m2 versus MA1631.1 (ASCL1(var.2)); m=11/29; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.668454; ---cdgCACCTGCysc-- ; cor=; Ncor= a 0 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 0 c 0 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 0 g 0 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 0 t 0 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0 0
MA0830.2_rc_shift2 (TCF4_rc)				; oligos_6nt_mkv2_m2 versus MA0830.2_rc (TCF4_rc); m=12/29; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.661363; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0
MA0816.1_shift4 (Ascl2)				; oligos_6nt_mkv2_m2 versus MA0816.1 (Ascl2); m=13/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.643066; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc)				; oligos_6nt_mkv2_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=14/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.636182; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; oligos_6nt_mkv2_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.633589; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA1620.1_shift3 (Ptf1a(var.3))				; oligos_6nt_mkv2_m2 versus MA1620.1 (Ptf1a(var.3)); m=16/29; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.624666; ---rmaCACCTGtky--- ; cor=; Ncor= a 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 0 c 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 0 g 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 0 t 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; oligos_6nt_mkv2_m2 versus MA1100.2_rc (ASCL1_rc); m=17/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.624243; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; oligos_6nt_mkv2_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.620118; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA0665.1_shift4 (MSC)				; oligos_6nt_mkv2_m2 versus MA0665.1 (MSC); m=19/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.604208; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0
MA0691.1_shift4 (TFAP4)				; oligos_6nt_mkv2_m2 versus MA0691.1 (TFAP4); m=20/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.593695; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0
MA0048.2_shift4 (NHLH1)				; oligos_6nt_mkv2_m2 versus MA0048.2 (NHLH1); m=21/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.586998; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA1648.1_shift4 (TCF12(var.2))				; oligos_6nt_mkv2_m2 versus MA1648.1 (TCF12(var.2)); m=22/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.57625; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0522.3_shift4 (TCF3)				; oligos_6nt_mkv2_m2 versus MA0522.3 (TCF3); m=23/29; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.573261; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0667.1_rc_shift4 (MYF6_rc)				; oligos_6nt_mkv2_m2 versus MA0667.1_rc (MYF6_rc); m=24/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.572289; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0
MA1529.1_shift0 (NHLH2)				; oligos_6nt_mkv2_m2 versus MA1529.1 (NHLH2); m=25/29; ncol2=18; w=14; offset=-2; strand=D; shift=0; score=0.554386; ggGyMGCAGCTGCGyCmc ; cor=; Ncor= a 4834.0 4312.0 3741.0 4921.0 5603.0 2378.0 2.0 21364.0 6.0 525.0 0.0 0.0 693.0 210.0 1184.0 3766.0 6392.0 3601.0 c 2655.0 2219.0 1065.0 6141.0 15451.0 2324.0 21359.0 0.0 2459.0 20268.0 14.0 2.0 20611.0 204.0 7207.0 18351.0 13462.0 11271.0 g 9732.0 13903.0 18450.0 4908.0 671.0 18930.0 2.0 26.0 20096.0 2266.0 3.0 21363.0 275.0 20977.0 1520.0 1183.0 1579.0 2264.0 t 4143.0 5198.0 2763.0 5394.0 151.0 2634.0 5.0 1.0 1054.0 0.0 21358.0 0.0 1230.0 740.0 13503.0 2533.0 3330.0 4228.0
MA0820.1_rc_shift4 (FIGLA_rc)				; oligos_6nt_mkv2_m2 versus MA0820.1_rc (FIGLA_rc); m=26/29; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.528825; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0
MA1559.1_shift4 (SNAI3)				; oligos_6nt_mkv2_m2 versus MA1559.1 (SNAI3); m=27/29; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.518244; ----arCAGGTGya---- ; cor=; Ncor= a 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 0 c 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 0 g 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 0 t 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0 0
MA0774.1_shift2 (MEIS2)				; oligos_6nt_mkv2_m2 versus MA0774.1 (MEIS2); m=28/29; ncol2=8; w=8; offset=0; strand=D; shift=2; score=0.448954; --tTGACAGs-------- ; cor=; Ncor= a 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 0 0 c 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 0 0 g 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 0 0 t 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0 0 0
MA0775.1_shift2 (MEIS3)				; oligos_6nt_mkv2_m2 versus MA0775.1 (MEIS3); m=29/29; ncol2=8; w=8; offset=0; strand=D; shift=2; score=0.424596; --wTGACAgs-------- ; cor=; Ncor= a 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 0 0 c 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 0 0 g 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 0 0 t 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m12_shift4 (oligos_7nt_mkv2_m12oligos_7nt_mkv2_m12)				; oligos_7nt_mkv2_m12 (oligos_7nt_mkv2_m12oligos_7nt_mkv2_m12); m=0 (reference); ncol1=11; shift=4; ncol=16; ----smACAGTTGym- ; Alignment reference a 0 0 0 0 1 6 12 0 12 0 0 0 0 0 4 0 c 0 0 0 0 4 5 0 12 0 0 0 0 0 5 4 0 g 0 0 0 0 6 0 0 0 0 12 0 0 12 2 2 0 t 0 0 0 0 1 1 0 0 0 0 12 12 0 5 2 0
MA0100.3_rc_shift5 (MYB_rc)				; oligos_7nt_mkv2_m12 versus MA0100.3_rc (MYB_rc); m=1/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.80941; -----kdCAGTTGvk- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0
MA0667.1_rc_shift5 (MYF6_rc)				; oligos_7nt_mkv2_m12 versus MA0667.1_rc (MYF6_rc); m=2/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.73539; -----RACAGyTGTT- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv2_m12 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=3/26; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.708606; ----rmaCAGGTGtky ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0
MA1641.1_shift4 (MYF5)				; oligos_7nt_mkv2_m12 versus MA1641.1 (MYF5); m=4/26; ncol2=12; w=11; offset=0; strand=D; shift=4; score=0.699779; ----gvaCAGCTGtbc ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0
MA1619.1_rc_shift4 (Ptf1a(var.2)_rc)				; oligos_7nt_mkv2_m12 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/26; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.698824; ----rmaCAGCTGtky ; cor=; Ncor= a 0 0 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 c 0 0 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 g 0 0 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 t 0 0 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0
MA1467.1_shift5 (ATOH1(var.2))				; oligos_7nt_mkv2_m12 versus MA1467.1 (ATOH1(var.2)); m=6/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.694825; -----AACAGCTGTY- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0
MA1559.1_shift5 (SNAI3)				; oligos_7nt_mkv2_m12 versus MA1559.1 (SNAI3); m=7/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.683886; -----arCAGGTGya- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0
MA1472.1_shift5 (BHLHA15(var.2))				; oligos_7nt_mkv2_m12 versus MA1472.1 (BHLHA15(var.2)); m=8/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.681667; -----avCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_7nt_mkv2_m12 versus MA0665.1_rc (MSC_rc); m=9/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.679033; -----AACAGCTGTT- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_7nt_mkv2_m12 versus MA0820.1_rc (FIGLA_rc); m=10/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.671844; -----wmCAGGTGkw- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_7nt_mkv2_m12 versus MA0499.2_rc (MYOD1_rc); m=11/26; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.658365; ---rkrACAGGTGcwg ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0
MA1542.1_rc_shift5 (OSR1_rc)				; oligos_7nt_mkv2_m12 versus MA1542.1_rc (OSR1_rc); m=12/26; ncol2=10; w=10; offset=1; strand=R; shift=5; score=0.65681; -----mACrGTAGCr- ; cor=; Ncor= a 0 0 0 0 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 c 0 0 0 0 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 g 0 0 0 0 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 t 0 0 0 0 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0
MA0500.2_rc_shift4 (MYOG_rc)				; oligos_7nt_mkv2_m12 versus MA0500.2_rc (MYOG_rc); m=13/26; ncol2=12; w=11; offset=0; strand=R; shift=4; score=0.650391; ----sarCAGCTGyts ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0
MA0521.1_shift5 (Tcf12)				; oligos_7nt_mkv2_m12 versus MA0521.1 (Tcf12); m=14/26; ncol2=11; w=10; offset=1; strand=D; shift=5; score=0.647601; -----rRCAGCTGswg ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0
MA0816.1_shift5 (Ascl2)				; oligos_7nt_mkv2_m12 versus MA0816.1 (Ascl2); m=15/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.640254; -----arCAGCTGyy- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_7nt_mkv2_m12 versus MA0745.2_rc (SNAI2_rc); m=16/26; ncol2=13; w=11; offset=-1; strand=R; shift=3; score=0.639499; ---rykACAGGTGcrt ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0
MA0691.1_shift5 (TFAP4)				; oligos_7nt_mkv2_m12 versus MA0691.1 (TFAP4); m=17/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.639446; -----AwCAGCTGwT- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0
MA1638.1_shift5 (HAND2)				; oligos_7nt_mkv2_m12 versus MA1638.1 (HAND2); m=18/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.639219; -----amCAGATGby- ; cor=; Ncor= a 0 0 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 c 0 0 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 g 0 0 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 t 0 0 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0
MA1100.2_shift5 (ASCL1)				; oligos_7nt_mkv2_m12 versus MA1100.2 (ASCL1); m=19/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.638568; -----rrCAGCTGcy- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0
MA1635.1_shift5 (BHLHE22(var.2))				; oligos_7nt_mkv2_m12 versus MA1635.1 (BHLHE22(var.2)); m=20/26; ncol2=10; w=10; offset=1; strand=D; shift=5; score=0.636961; -----csCAGCTGsg- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0
MA1618.1_shift4 (Ptf1a)				; oligos_7nt_mkv2_m12 versus MA1618.1 (Ptf1a); m=21/26; ncol2=13; w=11; offset=0; strand=D; shift=4; score=0.63301; ----dmaCAGATGttk ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0
MA1621.1_rc_shift3 (Rbpjl_rc)				; oligos_7nt_mkv2_m12 versus MA1621.1_rc (Rbpjl_rc); m=22/26; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.590127; ---grsaCAGGTGtkb ; cor=; Ncor= a 0 0 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 c 0 0 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 g 0 0 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 t 0 0 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0
MA1485.1_rc_shift3 (FERD3L_rc)				; oligos_7nt_mkv2_m12 versus MA1485.1_rc (FERD3L_rc); m=23/26; ncol2=14; w=11; offset=-1; strand=R; shift=3; score=0.565698; ---GTrACAGCTGkyr ; cor=; Ncor= a 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 c 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 g 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 t 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0
MA0832.1_shift3 (Tcf21)				; oligos_7nt_mkv2_m12 versus MA0832.1 (Tcf21); m=24/26; ncol2=14; w=11; offset=-1; strand=D; shift=3; score=0.565364; ---ryAACAGCTGTTr ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0
MA0743.2_shift0 (SCRT1)				; oligos_7nt_mkv2_m12 versus MA0743.2 (SCRT1); m=25/26; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.499295; wawkCAACAGGTGgtw ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0
MA0744.2_shift0 (SCRT2)				; oligos_7nt_mkv2_m12 versus MA0744.2 (SCRT2); m=26/26; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.490485; rrwkCAACAGGTggtw ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1 (oligos_6nt_mkv2_m1oligos_6nt_mkv2_m1); m=0 (reference); ncol1=14; shift=0; ncol=14; cwGaCAGCTGtCwg ; Alignment reference a 8 14 5 23 0 35 0 0 0 0 6 0 16 4 c 21 3 4 3 35 0 0 35 0 0 3 26 3 2 g 2 3 26 3 0 0 35 0 0 35 3 5 3 21 t 4 15 0 6 0 0 0 0 35 0 23 4 13 8
MA1641.1_rc_shift1 (MYF5_rc)				; oligos_6nt_mkv2_m1 versus MA1641.1_rc (MYF5_rc); m=1/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.789341; -gvaCAGCTGtbc- ; cor=; Ncor= a 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 c 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 g 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 t 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0
MA0796.1_rc_shift1 (TGIF1_rc)				; oligos_6nt_mkv2_m1 versus MA0796.1_rc (TGIF1_rc); m=2/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.777951; -TGACAGCTGTCA- ; cor=; Ncor= a 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 c 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 g 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 t 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0
MA1619.1_rc_shift1 (Ptf1a(var.2)_rc)				; oligos_6nt_mkv2_m1 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=3/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.777235; -rmaCAGCTGtky- ; cor=; Ncor= a 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 c 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 g 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 t 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0
MA1571.1_rc_shift1 (TGIF2LX_rc)				; oligos_6nt_mkv2_m1 versus MA1571.1_rc (TGIF2LX_rc); m=4/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.777101; -TGACAgcTGTCA- ; cor=; Ncor= a 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA1572.1_shift1 (TGIF2LY)				; oligos_6nt_mkv2_m1 versus MA1572.1 (TGIF2LY); m=5/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.767276; -TGACAgcTGTCA- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0
MA0797.1_shift1 (TGIF2)				; oligos_6nt_mkv2_m1 versus MA0797.1 (TGIF2); m=6/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.762727; -TGACAGsTGTCA- ; cor=; Ncor= a 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA0832.1_shift0 (Tcf21)				; oligos_6nt_mkv2_m1 versus MA0832.1 (Tcf21); m=7/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.762655; ryAACAGCTGTTry ; cor=; Ncor= a 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA0500.2_rc_shift1 (MYOG_rc)				; oligos_6nt_mkv2_m1 versus MA0500.2_rc (MYOG_rc); m=8/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.734969; -sarCAGCTGyts- ; cor=; Ncor= a 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA1621.1_shift0 (Rbpjl)				; oligos_6nt_mkv2_m1 versus MA1621.1 (Rbpjl); m=9/29; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.732238; svmaCACCTGtsyc ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0
MA0783.1_shift1 (PKNOX2)				; oligos_6nt_mkv2_m1 versus MA0783.1 (PKNOX2); m=10/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.726027; -TGACAGsTGTCA- ; cor=; Ncor= a 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA0499.2_rc_shift0 (MYOD1_rc)				; oligos_6nt_mkv2_m1 versus MA0499.2_rc (MYOD1_rc); m=11/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.694824; rkrACAGGTGcwg- ; cor=; Ncor= a 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA1618.1_rc_shift0 (Ptf1a_rc)				; oligos_6nt_mkv2_m1 versus MA1618.1_rc (Ptf1a_rc); m=12/29; ncol2=13; w=13; offset=0; strand=R; shift=0; score=0.682986; dmaaCATCTGtkh- ; cor=; Ncor= a 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0
MA0521.1_shift2 (Tcf12)				; oligos_6nt_mkv2_m1 versus MA0521.1 (Tcf12); m=13/29; ncol2=11; w=11; offset=2; strand=D; shift=2; score=0.68082; --rRCAGCTGswg- ; cor=; Ncor= a 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1467.1_shift2 (ATOH1(var.2))				; oligos_6nt_mkv2_m1 versus MA1467.1 (ATOH1(var.2)); m=14/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.665011; --AACAGCTGTY-- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0
MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)				; oligos_6nt_mkv2_m1 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.658524; -rmaCAGGTGtky- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0
MA1472.1_shift2 (BHLHA15(var.2))				; oligos_6nt_mkv2_m1 versus MA1472.1 (BHLHA15(var.2)); m=16/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.635313; --avCAGCTGyy-- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA1635.1_shift2 (BHLHE22(var.2))				; oligos_6nt_mkv2_m1 versus MA1635.1 (BHLHE22(var.2)); m=17/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score= 0.6251; --csCAGCTGsg-- ; cor=; Ncor= a 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1593.1_rc_shift1 (ZNF317_rc)				; oligos_6nt_mkv2_m1 versus MA1593.1_rc (ZNF317_rc); m=18/29; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.618668; -wrTCTGCTGTyw- ; cor=; Ncor= a 0 4421.0 3658.0 224.0 263.0 1601.0 237.0 206.0 717.0 178.0 1245.0 1378.0 5318.0 0 c 0 1481.0 1334.0 206.0 10730.0 289.0 223.0 10374.0 317.0 183.0 480.0 3670.0 1985.0 0 g 0 1709.0 4399.0 208.0 186.0 250.0 10608.0 192.0 85.0 10821.0 357.0 2141.0 1201.0 0 t 0 3852.0 2072.0 10825.0 284.0 9323.0 395.0 691.0 10344.0 281.0 9381.0 4274.0 2959.0 0
MA1100.2_shift2 (ASCL1)				; oligos_6nt_mkv2_m1 versus MA1100.2 (ASCL1); m=19/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.604177; --rrCAGCTGcy-- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA0665.1_rc_shift2 (MSC_rc)				; oligos_6nt_mkv2_m1 versus MA0665.1_rc (MSC_rc); m=20/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.601842; --AACAGCTGTT-- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0
MA0691.1_shift2 (TFAP4)				; oligos_6nt_mkv2_m1 versus MA0691.1 (TFAP4); m=21/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.600639; --AwCAGCTGwT-- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0816.1_shift2 (Ascl2)				; oligos_6nt_mkv2_m1 versus MA0816.1 (Ascl2); m=22/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.592984; --arCAGCTGyy-- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0667.1_shift2 (MYF6)				; oligos_6nt_mkv2_m1 versus MA0667.1 (MYF6); m=23/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.579665; --AACArCTGTY-- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0
MA0048.2_rc_shift2 (NHLH1_rc)				; oligos_6nt_mkv2_m1 versus MA0048.2_rc (NHLH1_rc); m=24/29; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.531769; --mGCAGCTGCg-- ; cor=; Ncor= a 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA0820.1_shift2 (FIGLA)				; oligos_6nt_mkv2_m1 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.526279; --wmCACCTGkw-- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0
MA1638.1_shift2 (HAND2)				; oligos_6nt_mkv2_m1 versus MA1638.1 (HAND2); m=26/29; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.500439; --amCAGATGby-- ; cor=; Ncor= a 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 0 0 c 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 0 0 g 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 0 0 t 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; oligos_6nt_mkv2_m1 versus MA0774.1_rc (MEIS2_rc); m=27/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.461216; ------sCTGTCAa ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0
MA0775.1_rc_shift6 (MEIS3_rc)				; oligos_6nt_mkv2_m1 versus MA0775.1_rc (MEIS3_rc); m=28/29; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.421438; ------scTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 c 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 g 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 t 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0
MA0498.2_rc_shift7 (MEIS1_rc)				; oligos_6nt_mkv2_m1 versus MA0498.2_rc (MEIS1_rc); m=29/29; ncol2=7; w=7; offset=7; strand=R; shift=7; score=0.407782; -------cTGTCAw ; cor=; Ncor= a 0 0 0 0 0 0 0 15106.0 3861.0 1155.0 0.0 0.0 77159.0 24921.0 c 0 0 0 0 0 0 0 29965.0 9263.0 0.0 672.0 77159.0 3174.0 9714.0 g 0 0 0 0 0 0 0 14864.0 0.0 77159.0 2903.0 1249.0 5575.0 18797.0 t 0 0 0 0 0 0 0 17224.0 77159.0 0.0 77159.0 0.0 8690.0 23727.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m21_shift2 (dyads_m21dyads_m21)				; dyads_m21 (dyads_m21dyads_m21); m=0 (reference); ncol1=14; shift=2; ncol=18; --ssAGCAGCTGCTss-- ; Alignment reference a 0 0 11 7 45 6 0 50 0 0 2 1 1 3 7 11 0 0 c 0 0 14 24 1 1 51 0 3 49 0 0 44 3 14 16 0 0 g 0 0 16 14 3 44 0 0 49 3 0 51 1 1 24 14 0 0 t 0 0 11 7 3 1 1 2 0 0 50 0 6 45 7 11 0 0
MA0832.1_rc_shift2 (Tcf21_rc)				; dyads_m21 versus MA0832.1_rc (Tcf21_rc); m=1/21; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.781897; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 0 c 0 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 0 g 0 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 0 t 0 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0 0
MA0500.2_rc_shift3 (MYOG_rc)				; dyads_m21 versus MA0500.2_rc (MYOG_rc); m=2/21; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.776399; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 c 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 g 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 t 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0
MA1631.1_rc_shift2 (ASCL1(var.2)_rc)				; dyads_m21 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/21; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.704272; --gsrGCAGGTGchg--- ; cor=; Ncor= a 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 3290.0 8805.0 7347.0 0 0 0 c 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 18576.0 8601.0 8371.0 0 0 0 g 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 6654.0 7998.0 11805.0 0 0 0 t 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0 5836.0 8952.0 6833.0 0 0 0
MA0816.1_rc_shift4 (Ascl2_rc)				; dyads_m21 versus MA0816.1_rc (Ascl2_rc); m=4/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.685691; ----rrCAGCTGyt---- ; cor=; Ncor= a 0 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 0 c 0 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 0 g 0 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 0 t 0 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0 0
MA0830.2_rc_shift2 (TCF4_rc)				; dyads_m21 versus MA0830.2_rc (TCF4_rc); m=5/21; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.684841; --ssggCAGGTGccg--- ; cor=; Ncor= a 0 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 0 c 0 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 0 g 0 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 0 t 0 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0 0
MA0521.1_rc_shift3 (Tcf12_rc)				; dyads_m21 versus MA0521.1_rc (Tcf12_rc); m=6/21; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.670011; ---cwsCAGCTGYy---- ; cor=; Ncor= a 0 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 0 c 0 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 0 g 0 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 0 t 0 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0 0
MA1619.1_shift3 (Ptf1a(var.2))				; dyads_m21 versus MA1619.1 (Ptf1a(var.2)); m=7/21; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.662798; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA1641.1_rc_shift3 (MYF5_rc)				; dyads_m21 versus MA1641.1_rc (MYF5_rc); m=8/21; ncol2=12; w=12; offset=1; strand=R; shift=3; score=0.659974; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 0 g 0 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0 0
MA1100.2_shift4 (ASCL1)				; dyads_m21 versus MA1100.2 (ASCL1); m=9/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.634379; ----rrCAGCTGcy---- ; cor=; Ncor= a 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 0 c 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 0 g 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 0 t 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0 0
MA0048.2_rc_shift4 (NHLH1_rc)				; dyads_m21 versus MA0048.2_rc (NHLH1_rc); m=10/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.628128; ----mGCAGCTGCg---- ; cor=; Ncor= a 0 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 0 c 0 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 0 g 0 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 0 t 0 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; dyads_m21 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.606974; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA0091.1_rc_shift4 (TAL1::TCF3_rc)				; dyads_m21 versus MA0091.1_rc (TAL1::TCF3_rc); m=12/21; ncol2=12; w=12; offset=2; strand=R; shift=4; score=0.605532; ----AmCAKMTGkTck-- ; cor=; Ncor= a 0 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 5.0 9.0 0 0 c 0 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 20.0 8.0 0 0 g 0 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 10.0 14.0 0 0 t 0 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 9.0 13.0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; dyads_m21 versus MA1635.1 (BHLHE22(var.2)); m=13/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.601951; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA0691.1_shift4 (TFAP4)				; dyads_m21 versus MA0691.1 (TFAP4); m=14/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.58979; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0
MA0665.1_shift4 (MSC)				; dyads_m21 versus MA0665.1 (MSC); m=15/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.576689; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0
MA1529.1_rc_shift0 (NHLH2_rc)				; dyads_m21 versus MA1529.1_rc (NHLH2_rc); m=16/21; ncol2=18; w=14; offset=-2; strand=R; shift=0; score=0.574977; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA1648.1_rc_shift3 (TCF12(var.2)_rc)				; dyads_m21 versus MA1648.1_rc (TCF12(var.2)_rc); m=17/21; ncol2=11; w=11; offset=1; strand=R; shift=3; score=0.560077; ---srGCAGGTGss---- ; cor=; Ncor= a 0 0 0 12248.0 16113.0 3412.0 1047.0 53985.0 662.0 1754.0 1733.0 1887.0 10887.0 12473.0 0 0 0 0 c 0 0 0 20060.0 14293.0 2314.0 55922.0 2625.0 3536.0 3780.0 5607.0 1186.0 18560.0 16996.0 0 0 0 0 g 0 0 0 18154.0 17603.0 55061.0 2088.0 3886.0 55765.0 55598.0 2007.0 57848.0 17594.0 19393.0 0 0 0 0 t 0 0 0 11414.0 13867.0 1089.0 2819.0 1380.0 1913.0 744.0 52529.0 955.0 14835.0 13014.0 0 0 0 0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc)				; dyads_m21 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.558575; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA0522.3_shift4 (TCF3)				; dyads_m21 versus MA0522.3 (TCF3); m=19/21; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.551891; ----svCACCTGCss--- ; cor=; Ncor= a 0 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 0 c 0 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 0 g 0 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 0 t 0 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0 0
MA0667.1_shift4 (MYF6)				; dyads_m21 versus MA0667.1 (MYF6); m=20/21; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.529663; ----AACArCTGTY---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 0 c 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 0 g 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 0 t 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0 0
MA0820.1_rc_shift4 (FIGLA_rc)				; dyads_m21 versus MA0820.1_rc (FIGLA_rc); m=21/21; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.507949; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m5_shift0 (dyads_m5dyads_m5)				; dyads_m5 (dyads_m5dyads_m5); m=0 (reference); ncol1=14; shift=0; ncol=15; rvdGACAGCTGmsg- ; Alignment reference a 17 16 15 8 56 0 56 0 0 0 0 32 12 14 0 c 6 21 9 5 0 57 0 0 57 0 0 15 16 9 0 g 21 16 16 43 1 0 0 57 0 0 57 6 17 20 0 t 13 4 17 1 0 0 1 0 0 57 0 4 12 14 0
MA0499.2_rc_shift1 (MYOD1_rc)				; dyads_m5 versus MA0499.2_rc (MYOD1_rc); m=1/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.780449; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA1641.1_shift2 (MYF5)				; dyads_m5 versus MA1641.1 (MYF5); m=2/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.767391; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_shift2 (Ptf1a(var.2))				; dyads_m5 versus MA1619.1 (Ptf1a(var.2)); m=3/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.764005; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA0500.2_rc_shift2 (MYOG_rc)				; dyads_m5 versus MA0500.2_rc (MYOG_rc); m=4/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.739626; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0521.1_shift3 (Tcf12)				; dyads_m5 versus MA0521.1 (Tcf12); m=5/33; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.732766; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA0745.2_rc_shift1 (SNAI2_rc)				; dyads_m5 versus MA0745.2_rc (SNAI2_rc); m=6/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.696588; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; dyads_m5 versus MA1485.1_rc (FERD3L_rc); m=7/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.686234; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA1593.1_shift2 (ZNF317)				; dyads_m5 versus MA1593.1 (ZNF317); m=8/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.684852; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA0832.1_shift1 (Tcf21)				; dyads_m5 versus MA0832.1 (Tcf21); m=9/33; ncol2=14; w=13; offset=1; strand=D; shift=1; score=0.680074; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA1618.1_rc_shift1 (Ptf1a_rc)				; dyads_m5 versus MA1618.1_rc (Ptf1a_rc); m=10/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.665296; -dmaaCATCTGtkh- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0
MA1571.1_rc_shift2 (TGIF2LX_rc)				; dyads_m5 versus MA1571.1_rc (TGIF2LX_rc); m=11/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.660091; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA0796.1_shift2 (TGIF1)				; dyads_m5 versus MA0796.1 (TGIF1); m=12/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.655405; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0
MA1572.1_rc_shift2 (TGIF2LY_rc)				; dyads_m5 versus MA1572.1_rc (TGIF2LY_rc); m=13/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.649862; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_shift2 (TGIF2)				; dyads_m5 versus MA0797.1 (TGIF2); m=14/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.642953; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)				; dyads_m5 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.637405; --rmaCAGGTGtky- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0
MA1621.1_rc_shift1 (Rbpjl_rc)				; dyads_m5 versus MA1621.1_rc (Rbpjl_rc); m=16/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.636397; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; dyads_m5 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.627478; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; dyads_m5 versus MA1635.1 (BHLHE22(var.2)); m=18/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.617048; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; dyads_m5 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.616523; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA0691.1_shift3 (TFAP4)				; dyads_m5 versus MA0691.1 (TFAP4); m=20/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.605343; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0783.1_shift2 (PKNOX2)				; dyads_m5 versus MA0783.1 (PKNOX2); m=21/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.604087; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; dyads_m5 versus MA1100.2_rc (ASCL1_rc); m=22/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.589847; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0816.1_shift3 (Ascl2)				; dyads_m5 versus MA0816.1 (Ascl2); m=23/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.584999; ---arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0665.1_shift3 (MSC)				; dyads_m5 versus MA0665.1 (MSC); m=24/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.577946; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA1123.2_rc_shift2 (TWIST1_rc)				; dyads_m5 versus MA1123.2_rc (TWIST1_rc); m=25/33; ncol2=13; w=12; offset=2; strand=R; shift=2; score=0.571368; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0
MA1109.1_shift2 (NEUROD1)				; dyads_m5 versus MA1109.1 (NEUROD1); m=26/33; ncol2=13; w=12; offset=2; strand=D; shift=2; score=0.567009; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA0667.1_rc_shift3 (MYF6_rc)				; dyads_m5 versus MA0667.1_rc (MYF6_rc); m=27/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.549301; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; dyads_m5 versus MA0048.2_rc (NHLH1_rc); m=28/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.54321; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA0820.1_rc_shift3 (FIGLA_rc)				; dyads_m5 versus MA0820.1_rc (FIGLA_rc); m=29/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.524983; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA0100.3_rc_shift3 (MYB_rc)				; dyads_m5 versus MA0100.3_rc (MYB_rc); m=30/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.505351; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0
MA0774.1_shift1 (MEIS2)				; dyads_m5 versus MA0774.1 (MEIS2); m=31/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.465593; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0
MA0775.1_shift1 (MEIS3)				; dyads_m5 versus MA0775.1 (MEIS3); m=32/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.440218; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0
MA0498.2_shift1 (MEIS1)				; dyads_m5 versus MA0498.2 (MEIS1); m=33/33; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.416198; -wTGACAg------- ; cor=; Ncor= a 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4 (oligos_7nt_mkv2_m4oligos_7nt_mkv2_m4); m=0 (reference); ncol1=14; shift=0; ncol=15; rswGACAGCTGmsg- ; Alignment reference a 17 14 15 8 56 0 57 0 0 0 0 32 12 14 0 c 5 22 9 5 0 57 0 0 57 0 1 15 15 9 0 g 22 17 14 43 1 0 0 57 0 0 56 6 18 20 0 t 13 4 19 1 0 0 0 0 0 57 0 4 12 14 0
MA0499.2_rc_shift1 (MYOD1_rc)				; oligos_7nt_mkv2_m4 versus MA0499.2_rc (MYOD1_rc); m=1/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.779513; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA1641.1_shift2 (MYF5)				; oligos_7nt_mkv2_m4 versus MA1641.1 (MYF5); m=2/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.766674; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_shift2 (Ptf1a(var.2))				; oligos_7nt_mkv2_m4 versus MA1619.1 (Ptf1a(var.2)); m=3/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.763688; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA0500.2_rc_shift2 (MYOG_rc)				; oligos_7nt_mkv2_m4 versus MA0500.2_rc (MYOG_rc); m=4/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.738873; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0521.1_shift3 (Tcf12)				; oligos_7nt_mkv2_m4 versus MA0521.1 (Tcf12); m=5/33; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.732791; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA0745.2_rc_shift1 (SNAI2_rc)				; oligos_7nt_mkv2_m4 versus MA0745.2_rc (SNAI2_rc); m=6/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.695653; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; oligos_7nt_mkv2_m4 versus MA1485.1_rc (FERD3L_rc); m=7/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.690879; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA1593.1_shift2 (ZNF317)				; oligos_7nt_mkv2_m4 versus MA1593.1 (ZNF317); m=8/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.685233; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA0832.1_shift1 (Tcf21)				; oligos_7nt_mkv2_m4 versus MA0832.1 (Tcf21); m=9/33; ncol2=14; w=13; offset=1; strand=D; shift=1; score=0.67972; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA1618.1_rc_shift1 (Ptf1a_rc)				; oligos_7nt_mkv2_m4 versus MA1618.1_rc (Ptf1a_rc); m=10/33; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.664653; -dmaaCATCTGtkh- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0
MA1571.1_rc_shift2 (TGIF2LX_rc)				; oligos_7nt_mkv2_m4 versus MA1571.1_rc (TGIF2LX_rc); m=11/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.661301; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA0796.1_shift2 (TGIF1)				; oligos_7nt_mkv2_m4 versus MA0796.1 (TGIF1); m=12/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.657281; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0
MA1572.1_rc_shift2 (TGIF2LY_rc)				; oligos_7nt_mkv2_m4 versus MA1572.1_rc (TGIF2LY_rc); m=13/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.650697; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_shift2 (TGIF2)				; oligos_7nt_mkv2_m4 versus MA0797.1 (TGIF2); m=14/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.644676; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv2_m4 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=15/33; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.637146; --rmaCAGGTGtky- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0
MA1621.1_rc_shift1 (Rbpjl_rc)				; oligos_7nt_mkv2_m4 versus MA1621.1_rc (Rbpjl_rc); m=16/33; ncol2=14; w=13; offset=1; strand=R; shift=1; score=0.636134; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; oligos_7nt_mkv2_m4 versus MA1467.1_rc (ATOH1(var.2)_rc); m=17/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.62707; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; oligos_7nt_mkv2_m4 versus MA1635.1 (BHLHE22(var.2)); m=18/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.617133; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; oligos_7nt_mkv2_m4 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=19/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.616278; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA0783.1_shift2 (PKNOX2)				; oligos_7nt_mkv2_m4 versus MA0783.1 (PKNOX2); m=20/33; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.605879; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA0691.1_shift3 (TFAP4)				; oligos_7nt_mkv2_m4 versus MA0691.1 (TFAP4); m=21/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.60516; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; oligos_7nt_mkv2_m4 versus MA1100.2_rc (ASCL1_rc); m=22/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.589207; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0816.1_shift3 (Ascl2)				; oligos_7nt_mkv2_m4 versus MA0816.1 (Ascl2); m=23/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.584258; ---arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0665.1_shift3 (MSC)				; oligos_7nt_mkv2_m4 versus MA0665.1 (MSC); m=24/33; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.577869; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA1123.2_rc_shift2 (TWIST1_rc)				; oligos_7nt_mkv2_m4 versus MA1123.2_rc (TWIST1_rc); m=25/33; ncol2=13; w=12; offset=2; strand=R; shift=2; score=0.570988; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0
MA1109.1_shift2 (NEUROD1)				; oligos_7nt_mkv2_m4 versus MA1109.1 (NEUROD1); m=26/33; ncol2=13; w=12; offset=2; strand=D; shift=2; score=0.565802; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA0667.1_rc_shift3 (MYF6_rc)				; oligos_7nt_mkv2_m4 versus MA0667.1_rc (MYF6_rc); m=27/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.54889; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; oligos_7nt_mkv2_m4 versus MA0048.2_rc (NHLH1_rc); m=28/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.544579; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA0820.1_rc_shift3 (FIGLA_rc)				; oligos_7nt_mkv2_m4 versus MA0820.1_rc (FIGLA_rc); m=29/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.524925; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA0100.3_rc_shift3 (MYB_rc)				; oligos_7nt_mkv2_m4 versus MA0100.3_rc (MYB_rc); m=30/33; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.505315; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0
MA0774.1_shift1 (MEIS2)				; oligos_7nt_mkv2_m4 versus MA0774.1 (MEIS2); m=31/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.469703; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0
MA0775.1_shift1 (MEIS3)				; oligos_7nt_mkv2_m4 versus MA0775.1 (MEIS3); m=32/33; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.444033; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0
MA0498.2_shift1 (MEIS1)				; oligos_7nt_mkv2_m4 versus MA0498.2 (MEIS1); m=33/33; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.419333; -wTGACAg------- ; cor=; Ncor= a 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m13_shift0 (oligos_7nt_mkv2_m13oligos_7nt_mkv2_m13)				; oligos_7nt_mkv2_m13 (oligos_7nt_mkv2_m13oligos_7nt_mkv2_m13); m=0 (reference); ncol1=16; shift=0; ncol=16; grmArCAGCTGTCwyc ; Alignment reference a 4 8 6 20 13 0 21 0 1 0 0 0 0 7 3 5 c 4 2 10 1 1 21 0 1 19 0 0 2 16 4 9 7 g 8 6 4 0 6 0 0 20 1 0 21 0 3 2 3 4 t 5 5 1 0 1 0 0 0 0 21 0 19 2 8 6 5
MA0832.1_rc_shift1 (Tcf21_rc)				; oligos_7nt_mkv2_m13 versus MA0832.1_rc (Tcf21_rc); m=1/29; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.775343; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA1485.1_shift1 (FERD3L)				; oligos_7nt_mkv2_m13 versus MA1485.1 (FERD3L); m=2/29; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.70303; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA1641.1_rc_shift2 (MYF5_rc)				; oligos_7nt_mkv2_m13 versus MA1641.1_rc (MYF5_rc); m=3/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.678081; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1621.1_shift1 (Rbpjl)				; oligos_7nt_mkv2_m13 versus MA1621.1 (Rbpjl); m=4/29; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.67056; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0
MA1619.1_shift2 (Ptf1a(var.2))				; oligos_7nt_mkv2_m13 versus MA1619.1 (Ptf1a(var.2)); m=5/29; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.666795; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0499.2_shift2 (MYOD1)				; oligos_7nt_mkv2_m13 versus MA0499.2 (MYOD1); m=6/29; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.65374; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA1618.1_rc_shift1 (Ptf1a_rc)				; oligos_7nt_mkv2_m13 versus MA1618.1_rc (Ptf1a_rc); m=7/29; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.645797; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0
MA0500.2_rc_shift2 (MYOG_rc)				; oligos_7nt_mkv2_m13 versus MA0500.2_rc (MYOG_rc); m=8/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.642879; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1467.1_shift3 (ATOH1(var.2))				; oligos_7nt_mkv2_m13 versus MA1467.1 (ATOH1(var.2)); m=9/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.607389; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0
MA0521.1_rc_shift2 (Tcf12_rc)				; oligos_7nt_mkv2_m13 versus MA0521.1_rc (Tcf12_rc); m=10/29; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.603886; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1620.1_rc_shift2 (Ptf1a(var.3)_rc)				; oligos_7nt_mkv2_m13 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=11/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.579466; --rmaCAGGTGtky-- ; cor=; Ncor= a 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0745.2_shift2 (SNAI2)				; oligos_7nt_mkv2_m13 versus MA0745.2 (SNAI2); m=12/29; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.57898; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA0665.1_rc_shift3 (MSC_rc)				; oligos_7nt_mkv2_m13 versus MA0665.1_rc (MSC_rc); m=13/29; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.577011; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA1472.1_shift3 (BHLHA15(var.2))				; oligos_7nt_mkv2_m13 versus MA1472.1 (BHLHA15(var.2)); m=14/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.564009; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA0667.1_shift3 (MYF6)				; oligos_7nt_mkv2_m13 versus MA0667.1 (MYF6); m=15/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.562864; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA0091.1_shift1 (TAL1::TCF3)				; oligos_7nt_mkv2_m13 versus MA0091.1 (TAL1::TCF3); m=16/29; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.551752; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0
MA0816.1_shift3 (Ascl2)				; oligos_7nt_mkv2_m13 versus MA0816.1 (Ascl2); m=17/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.54899; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA0691.1_shift3 (TFAP4)				; oligos_7nt_mkv2_m13 versus MA0691.1 (TFAP4); m=18/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.546378; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0796.1_rc_shift2 (TGIF1_rc)				; oligos_7nt_mkv2_m13 versus MA0796.1_rc (TGIF1_rc); m=19/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.544388; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0
MA1571.1_rc_shift2 (TGIF2LX_rc)				; oligos_7nt_mkv2_m13 versus MA1571.1_rc (TGIF2LX_rc); m=20/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.543128; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0
MA0797.1_rc_shift2 (TGIF2_rc)				; oligos_7nt_mkv2_m13 versus MA0797.1_rc (TGIF2_rc); m=21/29; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.532614; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA1572.1_shift2 (TGIF2LY)				; oligos_7nt_mkv2_m13 versus MA1572.1 (TGIF2LY); m=22/29; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.532309; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA1635.1_rc_shift3 (BHLHE22(var.2)_rc)				; oligos_7nt_mkv2_m13 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=23/29; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.515963; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA1100.2_shift3 (ASCL1)				; oligos_7nt_mkv2_m13 versus MA1100.2 (ASCL1); m=24/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.514873; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0820.1_shift3 (FIGLA)				; oligos_7nt_mkv2_m13 versus MA0820.1 (FIGLA); m=25/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.484372; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; oligos_7nt_mkv2_m13 versus MA0048.2_rc (NHLH1_rc); m=26/29; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.466202; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA1570.1_shift3 (TFAP4(var.2))				; oligos_7nt_mkv2_m13 versus MA1570.1 (TFAP4(var.2)); m=27/29; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.439809; ---ahCAyrTGkt--- ; cor=; Ncor= a 0 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 0 0 c 0 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 0 0 g 0 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 0 0 t 0 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0 0 0
MA0774.1_rc_shift7 (MEIS2_rc)				; oligos_7nt_mkv2_m13 versus MA0774.1_rc (MEIS2_rc); m=28/29; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.417141; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0
MA0775.1_rc_shift7 (MEIS3_rc)				; oligos_7nt_mkv2_m13 versus MA0775.1_rc (MEIS3_rc); m=29/29; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.403938; -------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m15_shift4 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15)				; oligos_7nt_mkv2_m15 (oligos_7nt_mkv2_m15oligos_7nt_mkv2_m15); m=0 (reference); ncol1=11; shift=4; ncol=16; ----ssCCCGCCGsg- ; Alignment reference a 0 0 0 0 4 4 0 1 0 0 3 0 0 3 3 0 c 0 0 0 0 7 11 23 24 26 0 19 23 2 10 5 0 g 0 0 0 0 11 8 3 2 1 27 5 4 25 11 18 0 t 0 0 0 0 5 4 1 0 0 0 0 0 0 3 1 0
MA1513.1_shift4 (KLF15)				; oligos_7nt_mkv2_m15 versus MA1513.1 (KLF15); m=1/7; ncol2=11; w=11; offset=0; strand=D; shift=4; score=0.773409; ----scCCCGCCCcs- ; cor=; Ncor= a 0 0 0 0 1184.0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 1566.0 1067.0 0 c 0 0 0 0 2903.0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 6267.0 5013.0 0 g 0 0 0 0 5538.0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 1934.0 3124.0 0 t 0 0 0 0 1744.0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 1602.0 2165.0 0
MA0471.2_rc_shift2 (E2F6_rc)				; oligos_7nt_mkv2_m15 versus MA0471.2_rc (E2F6_rc); m=2/7; ncol2=13; w=11; offset=-2; strand=R; shift=2; score=0.600109; --syTTCCCGCCyyc- ; cor=; Ncor= a 0 0 5600.0 4163.0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 6897.0 5665.0 5369.0 0 c 0 0 11405.0 12530.0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 11562.0 11649.0 12358.0 0 g 0 0 8477.0 7410.0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 5102.0 7405.0 8075.0 0 t 0 0 7616.0 8995.0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 9537.0 8379.0 7296.0 0
MA0696.1_shift1 (ZIC1)				; oligos_7nt_mkv2_m15 versus MA0696.1 (ZIC1); m=3/7; ncol2=14; w=11; offset=-3; strand=D; shift=1; score=0.555583; -gACCCCCyGCTGyG- ; cor=; Ncor= a 0 1113.0 22722.0 836.0 1264.0 2606.0 0.0 185.0 22.0 2156.0 23.0 1215.0 73.0 3121.0 35.0 0 c 0 3934.0 2660.0 28949.0 29217.0 25527.0 29399.0 29532.0 18412.0 45.0 27426.0 1757.0 24.0 7693.0 520.0 0 g 0 25702.0 7408.0 58.0 204.0 327.0 4.0 10.0 0.0 31995.0 439.0 5531.0 34649.0 1690.0 34431.0 0 t 0 8960.0 23.0 125.0 281.0 927.0 7.0 14.0 10313.0 14.0 6735.0 27084.0 1.0 16190.0 2725.0 0
MA0751.1_shift1 (ZIC4)				; oligos_7nt_mkv2_m15 versus MA0751.1 (ZIC4); m=4/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.551324; -krCCCCCyGykGyGh ; cor=; Ncor= a 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 1083.0 c 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 1224.0 g 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 363.0 t 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 916.0
MA0697.1_shift1 (ZIC3)				; oligos_7nt_mkv2_m15 versus MA0697.1 (ZIC3); m=5/7; ncol2=15; w=11; offset=-3; strand=D; shift=1; score=0.550655; -gACCCCCYGCtGyGh ; cor=; Ncor= a 0 20.0 163.0 7.0 7.0 22.0 0.0 0.0 0.0 22.0 4.0 18.0 3.0 24.0 3.0 56.0 c 0 50.0 32.0 203.0 204.0 188.0 209.0 206.0 142.0 5.0 178.0 26.0 0.0 89.0 2.0 79.0 g 0 163.0 43.0 0.0 3.0 0.0 0.0 0.0 0.0 217.0 6.0 53.0 225.0 13.0 214.0 13.0 t 0 69.0 0.0 4.0 7.0 19.0 0.0 0.0 61.0 2.0 29.0 163.0 3.0 74.0 23.0 53.0
MA1584.1_shift0 (ZIC5)				; oligos_7nt_mkv2_m15 versus MA1584.1 (ZIC5); m=6/7; ncol2=16; w=11; offset=-4; strand=D; shift=0; score=0.518347; mgACCCCCCGCtGyGm ; cor=; Ncor= a 6068.0 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 c 6877.0 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 g 5212.0 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 t 3106.0 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0
MA1122.1_rc_shift2 (TFDP1_rc)				; oligos_7nt_mkv2_m15 versus MA1122.1_rc (TFDP1_rc); m=7/7; ncol2=11; w=9; offset=-2; strand=R; shift=2; score=0.498983; --ssTTCCCGCsc--- ; cor=; Ncor= a 0 0 374.0 247.0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 328.0 0 0 0 c 0 0 648.0 648.0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 777.0 0 0 0 g 0 0 604.0 647.0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 491.0 0 0 0 t 0 0 381.0 465.0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 411.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m22_shift3 (dyads_m22dyads_m22)				; dyads_m22 (dyads_m22dyads_m22); m=0 (reference); ncol1=10; shift=3; ncol=13; ---wmCAAATGst ; Alignment reference a 0 0 0 11 9 0 21 21 21 0 0 1 5 c 0 0 0 3 7 21 0 0 0 0 0 10 5 g 0 0 0 1 2 0 0 0 0 0 21 6 5 t 0 0 0 6 3 0 0 0 0 21 0 4 6
MA0461.2_shift3 (Atoh1)				; dyads_m22 versus MA0461.2 (Atoh1); m=1/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.772287; ---rmCATATGky ; cor=; Ncor= a 0 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 34.0 128.0 c 0 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 234.0 494.0 g 0 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 376.0 126.0 t 0 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 384.0 533.0
MA1638.1_shift3 (HAND2)				; dyads_m22 versus MA1638.1 (HAND2); m=2/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.758422; ---amCAGATGby ; cor=; Ncor= a 0 0 0 10136.0 8836.0 19.0 29222.0 12.0 30192.0 14.0 234.0 5217.0 6165.0 c 0 0 0 5564.0 11298.0 30062.0 410.0 42.0 30.0 2276.0 149.0 7690.0 10227.0 g 0 0 0 7463.0 6994.0 132.0 647.0 30144.0 38.0 31.0 29851.0 8878.0 6108.0 t 0 0 0 7120.0 3155.0 70.0 4.0 85.0 23.0 27962.0 49.0 8498.0 7783.0
MA0633.1_rc_shift3 (Twist2_rc)				; dyads_m22 versus MA0633.1_rc (Twist2_rc); m=3/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.75634; ---mACATATGky ; cor=; Ncor= a 0 0 0 365.0 745.0 0.0 1000.0 0.0 783.0 0.0 0.0 69.0 200.0 c 0 0 0 272.0 155.0 1000.0 0.0 211.0 0.0 0.0 0.0 69.0 298.0 g 0 0 0 181.0 50.0 0.0 0.0 0.0 217.0 0.0 1000.0 580.0 200.0 t 0 0 0 181.0 50.0 0.0 0.0 789.0 0.0 1000.0 0.0 282.0 302.0
MA1108.2_shift3 (MXI1)				; dyads_m22 versus MA1108.2 (MXI1); m=4/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.751815; ---rvCACATGkc ; cor=; Ncor= a 0 0 0 5786.0 6184.0 109.0 21870.0 10.0 20506.0 0.0 527.0 2833.0 4945.0 c 0 0 0 4724.0 5841.0 21382.0 1.0 21552.0 0.0 507.0 114.0 5329.0 6343.0 g 0 0 0 6326.0 6078.0 97.0 170.0 18.0 1542.0 0.0 21232.0 7228.0 5394.0 t 0 0 0 5212.0 3945.0 460.0 7.0 468.0 0.0 21541.0 175.0 6658.0 5366.0
MA1468.1_shift3 (ATOH7)				; dyads_m22 versus MA1468.1 (ATOH7); m=5/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.747184; ---AmCATATGky ; cor=; Ncor= a 0 0 0 712.0 302.0 0.0 712.0 15.0 712.0 0.0 0.0 5.0 17.0 c 0 0 0 97.0 211.0 712.0 0.0 106.0 180.0 25.0 0.0 155.0 400.0 g 0 0 0 142.0 154.0 0.0 102.0 59.0 78.0 25.0 712.0 261.0 2.0 t 0 0 0 62.0 45.0 0.0 58.0 712.0 0.0 712.0 0.0 291.0 312.0
MA0818.1_shift3 (BHLHE22)				; dyads_m22 versus MA0818.1 (BHLHE22); m=6/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.744777; ---AmCATATGyy ; cor=; Ncor= a 0 0 0 520.0 189.0 6.0 520.0 0.0 520.0 11.0 0.0 4.0 36.0 c 0 0 0 26.0 229.0 520.0 6.0 2.0 4.0 48.0 2.0 193.0 254.0 g 0 0 0 172.0 99.0 0.0 24.0 0.0 2.0 0.0 520.0 123.0 21.0 t 0 0 0 21.0 4.0 0.0 8.0 520.0 2.0 520.0 4.0 201.0 520.0
MA1570.1_rc_shift3 (TFAP4(var.2)_rc)				; dyads_m22 versus MA1570.1_rc (TFAP4(var.2)_rc); m=7/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.741622; ---amCAyrTGdt ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0
MA0100.3_shift3 (MYB)				; dyads_m22 versus MA0100.3 (MYB); m=8/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.74109; ---mbCAACTGhm ; cor=; Ncor= a 0 0 0 425.0 292.0 0.0 1478.0 1519.0 0.0 1.0 8.0 401.0 422.0 c 0 0 0 422.0 428.0 1513.0 3.0 2.0 1527.0 60.0 3.0 482.0 528.0 g 0 0 0 300.0 397.0 5.0 39.0 0.0 0.0 68.0 1516.0 147.0 225.0 t 0 0 0 380.0 410.0 9.0 7.0 6.0 0.0 1398.0 0.0 497.0 352.0
MA0826.1_shift3 (OLIG1)				; dyads_m22 versus MA0826.1 (OLIG1); m=9/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.740897; ---AmCATATGkT ; cor=; Ncor= a 0 0 0 11391.0 5931.0 52.0 11391.0 12.0 11391.0 195.0 0.0 12.0 490.0 c 0 0 0 240.0 4142.0 11391.0 1.0 15.0 80.0 175.0 0.0 2082.0 2812.0 g 0 0 0 1526.0 1321.0 0.0 139.0 113.0 17.0 0.0 11391.0 4568.0 257.0 t 0 0 0 205.0 0.0 0.0 80.0 11391.0 10.0 11391.0 74.0 4730.0 11391.0
MA0827.1_shift3 (OLIG3)				; dyads_m22 versus MA0827.1 (OLIG3); m=10/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.735691; ---AmCATATGby ; cor=; Ncor= a 0 0 0 1915.0 800.0 222.0 1915.0 0.0 1915.0 56.0 4.0 28.0 265.0 c 0 0 0 204.0 1115.0 1915.0 10.0 26.0 103.0 224.0 4.0 662.0 964.0 g 0 0 0 427.0 208.0 0.0 99.0 72.0 11.0 2.0 1915.0 904.0 176.0 t 0 0 0 132.0 6.0 3.0 22.0 1915.0 0.0 1915.0 275.0 1010.0 1915.0
MA0678.1_shift3 (OLIG2)				; dyads_m22 versus MA0678.1 (OLIG2); m=11/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.733957; ---AmCATATGky ; cor=; Ncor= a 0 0 0 1609.0 680.0 74.0 1609.0 0.0 1609.0 21.0 10.0 4.0 146.0 c 0 0 0 90.0 929.0 1609.0 2.0 0.0 22.0 159.0 3.0 396.0 689.0 g 0 0 0 283.0 142.0 4.0 53.0 0.0 18.0 0.0 1609.0 866.0 57.0 t 0 0 0 108.0 16.0 0.0 22.0 1609.0 4.0 1609.0 117.0 744.0 1609.0
MA0669.1_shift3 (NEUROG2)				; dyads_m22 versus MA0669.1 (NEUROG2); m=12/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.727348; ---raCATATGtY ; cor=; Ncor= a 0 0 0 246.0 426.0 1.0 426.0 4.0 426.0 5.0 0.0 3.0 0.0 c 0 0 0 2.0 150.0 426.0 0.0 5.0 8.0 3.0 0.0 170.0 307.0 g 0 0 0 180.0 65.0 0.0 3.0 20.0 5.0 0.0 426.0 147.0 0.0 t 0 0 0 0.0 0.0 5.0 0.0 426.0 0.0 426.0 0.0 426.0 119.0
MA0623.2_shift3 (NEUROG1)				; dyads_m22 versus MA0623.2 (NEUROG1); m=13/27; ncol2=10; w=10; offset=0; strand=D; shift=3; score=0.726845; ---raCATATGky ; cor=; Ncor= a 0 0 0 1658.0 1898.0 0.0 3518.0 4.0 3518.0 0.0 0.0 23.0 68.0 c 0 0 0 118.0 876.0 3518.0 0.0 114.0 0.0 86.0 0.0 655.0 1844.0 g 0 0 0 1860.0 729.0 8.0 63.0 0.0 80.0 0.0 3518.0 907.0 187.0 t 0 0 0 33.0 14.0 0.0 0.0 3518.0 0.0 3518.0 0.0 1933.0 1673.0
MA0668.1_rc_shift3 (NEUROD2_rc)				; dyads_m22 versus MA0668.1_rc (NEUROD2_rc); m=14/27; ncol2=10; w=10; offset=0; strand=R; shift=3; score=0.716048; ---rmCATATGky ; cor=; Ncor= a 0 0 0 685.0 548.0 112.0 1587.0 4.0 1587.0 52.0 0.0 0.0 95.0 c 0 0 0 101.0 705.0 1587.0 0.0 38.0 0.0 308.0 95.0 240.0 769.0 g 0 0 0 592.0 373.0 0.0 328.0 120.0 156.0 0.0 1587.0 875.0 119.0 t 0 0 0 209.0 0.0 0.0 0.0 1587.0 0.0 1587.0 0.0 527.0 604.0
MA1524.1_rc_shift2 (MSGN1_rc)				; dyads_m22 versus MA1524.1_rc (MSGN1_rc); m=15/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.680842; --srmCAwwTGGy ; cor=; Ncor= a 0 0 1228.0 3104.0 3269.0 0.0 6373.0 2607.0 3950.0 0.0 0.0 726.0 408.0 c 0 0 1781.0 1503.0 3104.0 6373.0 17.0 814.0 112.0 374.0 17.0 1613.0 3277.0 g 0 0 1976.0 3269.0 1132.0 10.0 287.0 190.0 627.0 0.0 6373.0 6373.0 576.0 t 0 0 1388.0 514.0 412.0 0.0 10.0 3766.0 2424.0 6373.0 0.0 663.0 3096.0
MA0607.1_rc_shift4 (Bhlha15_rc)				; dyads_m22 versus MA0607.1_rc (Bhlha15_rc); m=16/27; ncol2=8; w=8; offset=1; strand=R; shift=4; score=0.622381; ----aCATATGs- ; cor=; Ncor= a 0 0 0 0 614.0 0.0 999.0 0.0 799.0 0.0 0.0 1.0 0 c 0 0 0 0 154.0 999.0 0.0 0.0 200.0 0.0 0.0 286.0 0 g 0 0 0 0 231.0 0.0 0.0 200.0 0.0 0.0 999.0 571.0 0 t 0 0 0 0 1.0 0.0 0.0 799.0 0.0 999.0 0.0 143.0 0
MA0817.1_shift2 (BHLHE23)				; dyads_m22 versus MA0817.1 (BHLHE23); m=17/27; ncol2=12; w=10; offset=-1; strand=D; shift=2; score=0.618803; --aAmCATATGkT ; cor=; Ncor= a 0 0 2550.0 5005.0 2779.0 21.0 5005.0 0.0 5005.0 47.0 0.0 13.0 243.0 c 0 0 686.0 55.0 1286.0 5005.0 0.0 4.0 5.0 115.0 4.0 1203.0 1468.0 g 0 0 858.0 890.0 932.0 0.0 67.0 1.0 3.0 5.0 5005.0 1771.0 92.0 t 0 0 912.0 44.0 8.0 0.0 17.0 5005.0 0.0 5005.0 7.0 2018.0 5005.0
MA0091.1_rc_shift3 (TAL1::TCF3_rc)				; dyads_m22 versus MA0091.1_rc (TAL1::TCF3_rc); m=18/27; ncol2=12; w=10; offset=0; strand=R; shift=3; score=0.59928; ---AmCAKMTGkT ; cor=; Ncor= a 0 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 c 0 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 g 0 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 t 0 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0
MA1568.1_rc_shift2 (TCF21(var.2)_rc)				; dyads_m22 versus MA1568.1_rc (TCF21(var.2)_rc); m=19/27; ncol2=12; w=10; offset=-1; strand=R; shift=2; score=0.591196; --yrmCATATGGt ; cor=; Ncor= a 0 0 105.0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 c 0 0 315.0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 g 0 0 150.0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 t 0 0 301.0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0
MA1642.1_shift1 (NEUROG2(var.2))				; dyads_m22 versus MA1642.1 (NEUROG2(var.2)); m=20/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.577374; -rrraCAGATGGy ; cor=; Ncor= a 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 c 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 g 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 t 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0
MA1618.1_shift2 (Ptf1a)				; dyads_m22 versus MA1618.1 (Ptf1a); m=21/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.567014; --dmaCAGATGtt ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0
MA1123.2_shift1 (TWIST1)				; dyads_m22 versus MA1123.2 (TWIST1); m=22/27; ncol2=13; w=10; offset=-2; strand=D; shift=1; score=0.558119; -awwCCAGATGtb ; cor=; Ncor= a 0 8329.0 7822.0 7536.0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 4070.0 c 0 5761.0 5530.0 4597.0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 7402.0 g 0 6485.0 5722.0 5772.0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 7273.0 t 0 6758.0 8259.0 9428.0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 8588.0
MA1109.1_shift2 (NEUROD1)				; dyads_m22 versus MA1109.1 (NEUROD1); m=23/27; ncol2=13; w=10; offset=-1; strand=D; shift=2; score=0.549392; --graCAGATGGy ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0
MA0507.1_rc_shift0 (POU2F2_rc)				; dyads_m22 versus MA0507.1_rc (POU2F2_rc); m=24/27; ncol2=13; w=10; offset=-3; strand=R; shift=0; score=0.54504; wyATGCAAATkmr ; cor=; Ncor= a 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 c 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 g 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 t 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0
MA0514.1_rc_shift1 (Sox3_rc)				; dyads_m22 versus MA0514.1_rc (Sox3_rc); m=25/27; ncol2=10; w=8; offset=-2; strand=R; shift=1; score=0.487129; -rrrACAAAGG-- ; cor=; Ncor= a 0 989.0 1173.0 1115.0 2067.0 0.0 2067.0 2067.0 1805.0 515.0 250.0 0 0 c 0 382.0 22.0 254.0 0.0 1923.0 0.0 0.0 0.0 0.0 330.0 0 0 g 0 654.0 853.0 698.0 0.0 144.0 0.0 0.0 0.0 1552.0 1487.0 0 0 t 0 42.0 19.0 0.0 0.0 0.0 0.0 0.0 262.0 0.0 0.0 0 0
MA0792.1_shift1 (POU5F1B)				; dyads_m22 versus MA0792.1 (POU5F1B); m=26/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.418926; -TATGywAAT--- ; cor=; Ncor= a 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 0 0 c 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 0 0 g 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 0 0 t 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0 0 0
MA0789.1_shift1 (POU3F4)				; dyads_m22 versus MA0789.1 (POU3F4); m=27/27; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=0.408937; -TATGCwAAT--- ; cor=; Ncor= a 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 0 0 c 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 0 0 g 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 0 0 t 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3 (oligos_7nt_mkv2_m3oligos_7nt_mkv2_m3); m=0 (reference); ncol1=16; shift=0; ncol=16; srsAACAGCTGTswmm ; Alignment reference a 3 7 4 15 14 0 18 0 1 0 1 0 0 10 5 5 c 5 2 6 1 1 18 0 2 16 0 0 1 12 1 7 7 g 6 6 7 1 3 0 0 16 1 0 17 0 5 2 3 3 t 4 3 1 1 0 0 0 0 0 18 0 17 1 5 3 3
MA0832.1_rc_shift1 (Tcf21_rc)				; oligos_7nt_mkv2_m3 versus MA0832.1_rc (Tcf21_rc); m=1/31; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.771555; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA1485.1_shift1 (FERD3L)				; oligos_7nt_mkv2_m3 versus MA1485.1 (FERD3L); m=2/31; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.715523; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA1621.1_shift1 (Rbpjl)				; oligos_7nt_mkv2_m3 versus MA1621.1 (Rbpjl); m=3/31; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.690695; -svmaCACCTGtsyc- ; cor=; Ncor= a 0 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 0 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 0 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 0 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0
MA1641.1_rc_shift2 (MYF5_rc)				; oligos_7nt_mkv2_m3 versus MA1641.1_rc (MYF5_rc); m=4/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.685713; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)				; oligos_7nt_mkv2_m3 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=5/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.673863; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0
MA1618.1_rc_shift1 (Ptf1a_rc)				; oligos_7nt_mkv2_m3 versus MA1618.1_rc (Ptf1a_rc); m=6/31; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.651134; -dmaaCATCTGtkh-- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0
MA0499.2_shift2 (MYOD1)				; oligos_7nt_mkv2_m3 versus MA0499.2 (MYOD1); m=7/31; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.645483; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0500.2_rc_shift2 (MYOG_rc)				; oligos_7nt_mkv2_m3 versus MA0500.2_rc (MYOG_rc); m=8/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.62787; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1467.1_shift3 (ATOH1(var.2))				; oligos_7nt_mkv2_m3 versus MA1467.1 (ATOH1(var.2)); m=9/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.605715; ---AACAGCTGTY--- ; cor=; Ncor= a 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0
MA0521.1_rc_shift2 (Tcf12_rc)				; oligos_7nt_mkv2_m3 versus MA0521.1_rc (Tcf12_rc); m=10/31; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.595047; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1620.1_shift2 (Ptf1a(var.3))				; oligos_7nt_mkv2_m3 versus MA1620.1 (Ptf1a(var.3)); m=11/31; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.594909; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0
MA0796.1_rc_shift2 (TGIF1_rc)				; oligos_7nt_mkv2_m3 versus MA0796.1_rc (TGIF1_rc); m=12/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.584125; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0 0
MA0745.2_shift2 (SNAI2)				; oligos_7nt_mkv2_m3 versus MA0745.2 (SNAI2); m=13/31; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.583453; --aygCACCTGTmry- ; cor=; Ncor= a 0 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA0665.1_rc_shift3 (MSC_rc)				; oligos_7nt_mkv2_m3 versus MA0665.1_rc (MSC_rc); m=14/31; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.578467; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA1571.1_rc_shift2 (TGIF2LX_rc)				; oligos_7nt_mkv2_m3 versus MA1571.1_rc (TGIF2LX_rc); m=15/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.578074; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 0 c 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 0 g 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 0 t 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0 0
MA0797.1_rc_shift2 (TGIF2_rc)				; oligos_7nt_mkv2_m3 versus MA0797.1_rc (TGIF2_rc); m=16/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.57193; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA0667.1_shift3 (MYF6)				; oligos_7nt_mkv2_m3 versus MA0667.1 (MYF6); m=17/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.569766; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA1572.1_shift2 (TGIF2LY)				; oligos_7nt_mkv2_m3 versus MA1572.1 (TGIF2LY); m=18/31; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.565829; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA1472.1_shift3 (BHLHA15(var.2))				; oligos_7nt_mkv2_m3 versus MA1472.1 (BHLHA15(var.2)); m=19/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.562115; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA0091.1_shift1 (TAL1::TCF3)				; oligos_7nt_mkv2_m3 versus MA0091.1 (TAL1::TCF3); m=20/31; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.556736; -mgAmCAKMTGkT--- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0
MA0783.1_rc_shift2 (PKNOX2_rc)				; oligos_7nt_mkv2_m3 versus MA0783.1_rc (PKNOX2_rc); m=21/31; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.549414; --TGACAsCTGTCA-- ; cor=; Ncor= a 0 0 9.0 3.0 1167.0 0.0 1204.0 0.0 118.0 4.0 9.0 6.0 0.0 1192.0 0 0 c 0 0 21.0 6.0 5.0 1370.0 0.0 702.0 1298.0 1.0 0.0 13.0 1389.0 9.0 0 0 g 0 0 1.0 1265.0 29.0 1.0 4.0 304.0 0.0 0.0 1250.0 3.0 6.0 0.0 0 0 t 0 0 1190.0 11.0 10.0 3.0 0.0 39.0 7.0 1169.0 0.0 1124.0 1.0 37.0 0 0
MA0691.1_shift3 (TFAP4)				; oligos_7nt_mkv2_m3 versus MA0691.1 (TFAP4); m=22/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.542342; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA1655.1_shift0 (ZNF341)				; oligos_7nt_mkv2_m3 versus MA1655.1 (ZNF341); m=23/31; ncol2=12; w=12; offset=0; strand=D; shift=0; score=0.537013; grGAACAGCcas---- ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0
MA0816.1_shift3 (Ascl2)				; oligos_7nt_mkv2_m3 versus MA0816.1 (Ascl2); m=24/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.534606; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; oligos_7nt_mkv2_m3 versus MA1635.1 (BHLHE22(var.2)); m=25/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.512363; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA1100.2_shift3 (ASCL1)				; oligos_7nt_mkv2_m3 versus MA1100.2 (ASCL1); m=26/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.506232; ---rrCAGCTGcy--- ; cor=; Ncor= a 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0820.1_shift3 (FIGLA)				; oligos_7nt_mkv2_m3 versus MA0820.1 (FIGLA); m=27/31; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.494567; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; oligos_7nt_mkv2_m3 versus MA0048.2_rc (NHLH1_rc); m=28/31; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.458806; ---mGCAGCTGCg--- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0 0
MA1570.1_rc_shift3 (TFAP4(var.2)_rc)				; oligos_7nt_mkv2_m3 versus MA1570.1_rc (TFAP4(var.2)_rc); m=29/31; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.444912; ---amCAyrTGdt--- ; cor=; Ncor= a 0 0 0 479.0 206.0 0.0 479.0 0.0 479.0 0.0 0.0 129.0 39.0 0 0 0 c 0 0 0 110.0 156.0 479.0 0.0 287.0 161.0 14.0 0.0 0.0 197.0 0 0 0 g 0 0 0 210.0 14.0 3.0 0.0 149.0 220.0 0.0 479.0 144.0 130.0 0 0 0 t 0 0 0 60.0 103.0 0.0 0.0 479.0 0.0 479.0 0.0 217.0 479.0 0 0 0
MA0774.1_rc_shift7 (MEIS2_rc)				; oligos_7nt_mkv2_m3 versus MA0774.1_rc (MEIS2_rc); m=30/31; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.444186; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0
MA0775.1_rc_shift7 (MEIS3_rc)				; oligos_7nt_mkv2_m3 versus MA0775.1_rc (MEIS3_rc); m=31/31; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.426999; -------scTGTCAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 975.0 2094.0 145.0 160.0 53.0 0.0 7165.0 3451.0 0 c 0 0 0 0 0 0 0 2888.0 7165.0 468.0 8.0 455.0 7165.0 260.0 1788.0 0 g 0 0 0 0 0 0 0 2342.0 1889.0 8.0 7165.0 20.0 6.0 383.0 60.0 0 t 0 0 0 0 0 0 0 960.0 1690.0 7165.0 53.0 7165.0 0.0 465.0 1866.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m36_shift0 (dyads_m36dyads_m36)				; dyads_m36 (dyads_m36dyads_m36); m=0 (reference); ncol1=15; shift=0; ncol=15; rvkGACAGCTGctks ; Alignment reference a 22 19 16 12 62 0 67 2 1 1 0 16 16 14 14 c 9 18 12 4 1 67 0 1 66 0 0 43 15 10 17 g 25 21 22 50 4 0 0 63 0 0 67 5 13 25 23 t 11 9 17 1 0 0 0 1 0 66 0 3 23 18 13
MA0499.2_rc_shift1 (MYOD1_rc)				; dyads_m36 versus MA0499.2_rc (MYOD1_rc); m=1/37; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.761931; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA0832.1_shift1 (Tcf21)				; dyads_m36 versus MA0832.1 (Tcf21); m=2/37; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.741772; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA0500.2_rc_shift2 (MYOG_rc)				; dyads_m36 versus MA0500.2_rc (MYOG_rc); m=3/37; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.718523; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA1641.1_shift2 (MYF5)				; dyads_m36 versus MA1641.1 (MYF5); m=4/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.715703; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_shift2 (Ptf1a(var.2))				; dyads_m36 versus MA1619.1 (Ptf1a(var.2)); m=5/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.712079; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; dyads_m36 versus MA1485.1_rc (FERD3L_rc); m=6/37; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.70902; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA0521.1_shift3 (Tcf12)				; dyads_m36 versus MA0521.1 (Tcf12); m=7/37; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.698312; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1621.1_rc_shift1 (Rbpjl_rc)				; dyads_m36 versus MA1621.1_rc (Rbpjl_rc); m=8/37; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.686118; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0
MA0745.2_rc_shift1 (SNAI2_rc)				; dyads_m36 versus MA0745.2_rc (SNAI2_rc); m=9/37; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.676449; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA1618.1_shift2 (Ptf1a)				; dyads_m36 versus MA1618.1 (Ptf1a); m=10/37; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.638871; --dmaCAGATGttkh ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0
MA1123.2_rc_shift2 (TWIST1_rc)				; dyads_m36 versus MA1123.2_rc (TWIST1_rc); m=11/37; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.621912; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0
MA1631.1_shift2 (ASCL1(var.2))				; dyads_m36 versus MA1631.1 (ASCL1(var.2)); m=12/37; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.617963; --cdgCACCTGCysc ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0
MA0830.2_rc_shift1 (TCF4_rc)				; dyads_m36 versus MA0830.2_rc (TCF4_rc); m=13/37; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.612456; -ssggCAGGTGccg- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0
MA1109.1_shift2 (NEUROD1)				; dyads_m36 versus MA1109.1 (NEUROD1); m=14/37; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.609308; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA1620.1_shift2 (Ptf1a(var.3))				; dyads_m36 versus MA1620.1 (Ptf1a(var.3)); m=15/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.598299; --rmaCACCTGtky- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; dyads_m36 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.596312; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; dyads_m36 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.592227; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA1571.1_shift2 (TGIF2LX)				; dyads_m36 versus MA1571.1 (TGIF2LX); m=18/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.588821; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0
MA1593.1_shift2 (ZNF317)				; dyads_m36 versus MA1593.1 (ZNF317); m=19/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.588668; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA1635.1_shift3 (BHLHE22(var.2))				; dyads_m36 versus MA1635.1 (BHLHE22(var.2)); m=20/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.588485; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA0796.1_rc_shift2 (TGIF1_rc)				; dyads_m36 versus MA0796.1_rc (TGIF1_rc); m=21/37; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.586791; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 33.0 17.0 12656.0 9.0 12775.0 12.0 963.0 4.0 7.0 0.0 4.0 13221.0 0 c 0 0 32.0 13.0 3.0 13261.0 8.0 2520.0 12673.0 22.0 5.0 20.0 13499.0 1.0 0 g 0 0 17.0 13485.0 24.0 13.0 62.0 10562.0 20.0 5.0 13304.0 3.0 8.0 19.0 0 t 0 0 9034.0 36.0 45.0 11.0 1.0 452.0 14.0 8861.0 1.0 8828.0 9.0 39.0 0
MA0816.1_shift3 (Ascl2)				; dyads_m36 versus MA0816.1 (Ascl2); m=22/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.585183; ---arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; dyads_m36 versus MA1100.2_rc (ASCL1_rc); m=23/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.583227; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA1572.1_rc_shift2 (TGIF2LY_rc)				; dyads_m36 versus MA1572.1_rc (TGIF2LY_rc); m=24/37; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.578743; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_shift2 (TGIF2)				; dyads_m36 versus MA0797.1 (TGIF2); m=25/37; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.576121; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA0691.1_shift3 (TFAP4)				; dyads_m36 versus MA0691.1 (TFAP4); m=26/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.555455; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0665.1_shift3 (MSC)				; dyads_m36 versus MA0665.1 (MSC); m=27/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.551594; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; dyads_m36 versus MA0048.2_rc (NHLH1_rc); m=28/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.537108; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA1648.1_shift3 (TCF12(var.2))				; dyads_m36 versus MA1648.1 (TCF12(var.2)); m=29/37; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.528622; ---ssCACCTGCys- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0
MA0522.3_shift3 (TCF3)				; dyads_m36 versus MA0522.3 (TCF3); m=30/37; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.526188; ---svCACCTGCss- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0
MA0667.1_rc_shift3 (MYF6_rc)				; dyads_m36 versus MA0667.1_rc (MYF6_rc); m=31/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.522942; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA0820.1_rc_shift3 (FIGLA_rc)				; dyads_m36 versus MA0820.1_rc (FIGLA_rc); m=32/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.492219; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA1559.1_shift3 (SNAI3)				; dyads_m36 versus MA1559.1 (SNAI3); m=33/37; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.485784; ---arCAGGTGya-- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0
MA0100.3_rc_shift3 (MYB_rc)				; dyads_m36 versus MA0100.3_rc (MYB_rc); m=34/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.470745; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0
MA1638.1_rc_shift3 (HAND2_rc)				; dyads_m36 versus MA1638.1_rc (HAND2_rc); m=35/37; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.467441; ---rvCATCTGkt-- ; cor=; Ncor= a 0 0 0 7783.0 8498.0 49.0 27962.0 23.0 85.0 4.0 70.0 3155.0 7120.0 0 0 c 0 0 0 6108.0 8878.0 29851.0 31.0 38.0 30144.0 647.0 132.0 6994.0 7463.0 0 0 g 0 0 0 10227.0 7690.0 149.0 2276.0 30.0 42.0 410.0 30062.0 11298.0 5564.0 0 0 t 0 0 0 6165.0 5217.0 234.0 14.0 30192.0 12.0 29222.0 19.0 8836.0 10136.0 0 0
MA0774.1_shift1 (MEIS2)				; dyads_m36 versus MA0774.1 (MEIS2); m=36/37; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.434323; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0
MA0775.1_shift1 (MEIS3)				; dyads_m36 versus MA0775.1 (MEIS3); m=37/37; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.413878; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m33_shift0 (dyads_m33dyads_m33)				; dyads_m33 (dyads_m33dyads_m33); m=0 (reference); ncol1=10; shift=0; ncol=12; ACACTGTAGr-- ; Alignment reference a 54 1 76 0 0 0 0 76 5 21 0 0 c 17 68 0 76 0 0 0 0 3 6 0 0 g 0 6 0 0 1 76 0 0 66 48 0 0 t 5 1 0 0 75 0 76 0 2 1 0 0
MA1580.1_rc_shift0 (ZBTB32_rc)				; dyads_m33 versus MA1580.1_rc (ZBTB32_rc); m=1/3; ncol2=10; w=10; offset=0; strand=R; shift=0; score=0.752354; wtACTGTACa-- ; cor=; Ncor= a 1574.0 339.0 3558.0 6.0 8.0 0.0 0.0 3563.0 156.0 1849.0 0 0 c 215.0 723.0 0.0 3562.0 4.0 1.0 0.0 3.0 3057.0 65.0 0 0 g 213.0 109.0 4.0 3.0 3.0 3560.0 5.0 1.0 3.0 764.0 0 0 t 1559.0 2390.0 0.0 0.0 3556.0 0.0 3560.0 5.0 356.0 882.0 0 0
MA1542.1_rc_shift1 (OSR1_rc)				; dyads_m33 versus MA1542.1_rc (OSR1_rc); m=2/3; ncol2=10; w=9; offset=1; strand=R; shift=1; score=0.573803; -mACrGTAGCr- ; cor=; Ncor= a 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 c 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 g 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 t 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0
MA1585.1_shift2 (ZKSCAN1)				; dyads_m33 versus MA1585.1 (ZKSCAN1); m=3/3; ncol2=10; w=8; offset=2; strand=D; shift=2; score=0.472673; --AyAGTAGGtg ; cor=; Ncor= a 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 605.0 1273.0 c 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 1303.0 1480.0 g 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 750.0 2880.0 t 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0 3469.0 494.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift5 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 (oligos_6nt_mkv2_m4oligos_6nt_mkv2_m4); m=0 (reference); ncol1=10; shift=5; ncol=16; -----dsAGGCAGrg- ; Alignment reference a 0 0 0 0 0 17 7 59 0 0 0 59 0 18 13 0 c 0 0 0 0 0 10 15 0 0 0 59 0 0 12 6 0 g 0 0 0 0 0 16 33 0 59 59 0 0 59 23 32 0 t 0 0 0 0 0 16 4 0 0 0 0 0 0 6 8 0
MA0764.2_shift5 (ETV4)				; oligos_6nt_mkv2_m4 versus MA0764.2 (ETV4); m=1/7; ncol2=10; w=10; offset=0; strand=D; shift=5; score=0.748447; -----rcAGGAAGyr- ; cor=; Ncor= a 0 0 0 0 0 3119.0 1206.0 8353.0 0.0 1.0 8374.0 8333.0 11.0 1296.0 2336.0 0 c 0 0 0 0 0 1494.0 4608.0 61.0 92.0 1.0 0.0 73.0 28.0 2194.0 1597.0 0 g 0 0 0 0 0 2721.0 1936.0 0.0 8308.0 8345.0 0.0 0.0 8344.0 1949.0 3055.0 0 t 0 0 0 0 0 1080.0 664.0 0.0 14.0 67.0 40.0 8.0 31.0 2975.0 1426.0 0
MA1596.1_rc_shift1 (ZNF460_rc)				; oligos_6nt_mkv2_m4 versus MA1596.1_rc (ZNF460_rc); m=2/7; ncol2=16; w=10; offset=-4; strand=R; shift=1; score=0.467675; -CyyGGGAGGCkGAGG ; cor=; Ncor= a 0 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 c 0 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 g 0 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 t 0 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0
MA1631.1_rc_shift6 (ASCL1(var.2)_rc)				; oligos_6nt_mkv2_m4 versus MA1631.1_rc (ASCL1(var.2)_rc); m=3/7; ncol2=13; w=9; offset=1; strand=R; shift=6; score=0.456198; ------gsrGCAGGTG ; cor=; Ncor= a 0 0 0 0 0 0 8032.0 7779.0 9017.0 2394.0 249.0 32756.0 151.0 815.0 618.0 289.0 c 0 0 0 0 0 0 8356.0 8939.0 2966.0 2719.0 33411.0 492.0 607.0 3209.0 860.0 321.0 g 0 0 0 0 0 0 11996.0 10555.0 17883.0 28844.0 445.0 740.0 33402.0 30169.0 563.0 33562.0 t 0 0 0 0 0 0 5972.0 7083.0 4490.0 399.0 251.0 368.0 196.0 163.0 32315.0 184.0
MA0003.4_rc_shift0 (TFAP2A_rc)				; oligos_6nt_mkv2_m4 versus MA0003.4_rc (TFAP2A_rc); m=4/7; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=0.454783; tksCCTGAGGcarb-- ; cor=; Ncor= a 3008.0 3914.0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 6701.0 5211.0 3469.0 0 0 c 3841.0 3051.0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 3791.0 3374.0 4072.0 0 0 g 3915.0 4783.0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 2634.0 4620.0 4092.0 0 0 t 5204.0 4220.0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 2842.0 2763.0 4335.0 0 0
MA0812.1_shift1 (TFAP2B(var.2))				; oligos_6nt_mkv2_m4 versus MA0812.1 (TFAP2B(var.2)); m=5/7; ncol2=11; w=7; offset=-4; strand=D; shift=1; score=0.43829; -mGCCysAGGCd---- ; cor=; Ncor= a 0 1784.0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 1822.0 0 0 0 0 c 0 1412.0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 371.0 0 0 0 0 g 0 232.0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 1149.0 0 0 0 0 t 0 1121.0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 1207.0 0 0 0 0
MA0814.2_shift0 (TFAP2C(var.2))				; oligos_6nt_mkv2_m4 versus MA0814.2 (TFAP2C(var.2)); m=6/7; ncol2=14; w=9; offset=-5; strand=D; shift=0; score=0.424619; bggCCTGAGGCgvs-- ; cor=; Ncor= a 11314.0 13628.0 3782.0 736.0 482.0 1367.0 1323.0 51058.0 874.0 714.0 4313.0 10186.0 16182.0 12086.0 0 0 c 15858.0 12565.0 14686.0 57108.0 57617.0 5539.0 3036.0 4733.0 1486.0 1575.0 42758.0 12553.0 15252.0 16468.0 0 0 g 17038.0 20129.0 37729.0 2273.0 2060.0 4910.0 55222.0 3944.0 57995.0 57916.0 9867.0 27373.0 18680.0 17367.0 0 0 t 16609.0 14497.0 4622.0 702.0 660.0 49003.0 1238.0 1084.0 464.0 614.0 3881.0 10707.0 10705.0 14898.0 0 0
MA1569.1_rc_shift1 (TFAP2E_rc)				; oligos_6nt_mkv2_m4 versus MA1569.1_rc (TFAP2E_rc); m=7/7; ncol2=11; w=7; offset=-4; strand=R; shift=1; score=0.401558; -ysCCysrGGsr---- ; cor=; Ncor= a 0 2729.0 0.0 0.0 0.0 0.0 1316.0 7858.0 0.0 0.0 0.0 4957.0 0 0 0 0 c 0 5310.0 6818.0 14449.0 14449.0 4463.0 5766.0 2053.0 0.0 0.0 14449.0 1434.0 0 0 0 0 g 0 1506.0 14449.0 0.0 0.0 2419.0 5928.0 4768.0 14449.0 14449.0 6924.0 5504.0 0 0 0 0 t 0 4904.0 0.0 0.0 0.0 7716.0 1440.0 0.0 0.0 0.0 0.0 2554.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m9_shift4 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9)				; oligos_7nt_mkv2_m9 (oligos_7nt_mkv2_m9oligos_7nt_mkv2_m9); m=0 (reference); ncol1=11; shift=4; ncol=17; ----wtTAAATAAag-- ; Alignment reference a 0 0 0 0 4 3 0 12 12 13 1 13 12 6 3 0 0 c 0 0 0 0 3 3 0 0 0 0 0 0 1 3 1 0 0 g 0 0 0 0 1 3 0 1 0 0 0 0 0 2 6 0 0 t 0 0 0 0 5 4 13 0 1 0 12 0 0 2 3 0 0
MA0621.1_rc_shift4 (mix-a_rc)				; oligos_7nt_mkv2_m9 versus MA0621.1_rc (mix-a_rc); m=1/33; ncol2=11; w=11; offset=0; strand=R; shift=4; score=0.745235; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0
MA1463.1_shift4 (ARGFX)				; oligos_7nt_mkv2_m9 versus MA1463.1 (ARGFX); m=2/33; ncol2=10; w=10; offset=0; strand=D; shift=4; score=0.654332; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0
MA0703.2_rc_shift5 (LMX1B_rc)				; oligos_7nt_mkv2_m9 versus MA0703.2_rc (LMX1B_rc); m=3/33; ncol2=11; w=10; offset=1; strand=R; shift=5; score=0.640455; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0
MA0047.3_shift3 (FOXA2)				; oligos_7nt_mkv2_m9 versus MA0047.3 (FOXA2); m=4/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.618451; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 112241.0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 76950.0 85410.0 0 0 0 c 0 0 0 34080.0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 50576.0 53633.0 0 0 0 g 0 0 0 63806.0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 50527.0 56632.0 0 0 0 t 0 0 0 52026.0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 84100.0 66478.0 0 0 0
MA0846.1_shift2 (FOXC2)				; oligos_7nt_mkv2_m9 versus MA0846.1 (FOXC2); m=5/33; ncol2=12; w=10; offset=-2; strand=D; shift=2; score=0.61791; --wAwrTAAAYAww--- ; cor=; Ncor= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 10995.0 0 0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 3080.0 0 0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 2649.0 0 0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 9461.0 0 0 0
MA1606.1_shift3 (Foxf1)				; oligos_7nt_mkv2_m9 versus MA1606.1 (Foxf1); m=6/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.616207; ---awrTAAACAaa--- ; cor=; Ncor= a 0 0 0 23159.0 17275.0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 18673.0 20323.0 0 0 0 c 0 0 0 10753.0 7560.0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 12643.0 11715.0 0 0 0 g 0 0 0 12462.0 8287.0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 14294.0 12844.0 0 0 0 t 0 0 0 13166.0 26418.0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 13930.0 14658.0 0 0 0
MA1113.2_shift2 (PBX2)				; oligos_7nt_mkv2_m9 versus MA1113.2 (PBX2); m=7/33; ncol2=13; w=11; offset=-2; strand=D; shift=2; score=0.612348; --rhcATAAATCAtw-- ; cor=; Ncor= a 0 0 8363.0 8307.0 4925.0 26620.0 225.0 24368.0 27245.0 27259.0 704.0 2298.0 25945.0 6993.0 7897.0 0 0 c 0 0 5863.0 8859.0 19645.0 629.0 588.0 2266.0 574.0 754.0 453.0 23894.0 848.0 7057.0 7086.0 0 0 g 0 0 9625.0 3047.0 1585.0 1710.0 317.0 817.0 343.0 569.0 327.0 555.0 352.0 3952.0 5574.0 0 0 t 0 0 5745.0 9383.0 3441.0 637.0 28466.0 2145.0 1434.0 1014.0 28112.0 2849.0 2451.0 11594.0 9039.0 0 0
MA0481.3_shift3 (FOXP1)				; oligos_7nt_mkv2_m9 versus MA0481.3 (FOXP1); m=8/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.607765; ---awGTAAACAww--- ; cor=; Ncor= a 0 0 0 26982.0 26879.0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 20210.0 25974.0 0 0 0 c 0 0 0 13908.0 6209.0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 17235.0 14312.0 0 0 0 g 0 0 0 16635.0 14136.0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 15846.0 12809.0 0 0 0 t 0 0 0 17193.0 27494.0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 21427.0 21623.0 0 0 0
MA1683.1_shift3 (FOXA3)				; oligos_7nt_mkv2_m9 versus MA1683.1 (FOXA3); m=9/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.606368; ---rwGTAAACAww--- ; cor=; Ncor= a 0 0 0 18375.0 16693.0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 13442.0 14902.0 0 0 0 c 0 0 0 8520.0 3627.0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 9975.0 9884.0 0 0 0 g 0 0 0 12744.0 9296.0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 11451.0 11103.0 0 0 0 t 0 0 0 9298.0 19321.0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 14069.0 13048.0 0 0 0
MA1103.2_shift3 (FOXK2)				; oligos_7nt_mkv2_m9 versus MA1103.2 (FOXK2); m=10/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.600326; ---awGTAAACAar--- ; cor=; Ncor= a 0 0 0 6548.0 4861.0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 4836.0 4855.0 0 0 0 c 0 0 0 2872.0 2198.0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 3877.0 3788.0 0 0 0 g 0 0 0 3471.0 3423.0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 3950.0 5012.0 0 0 0 t 0 0 0 3788.0 6197.0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 4016.0 3024.0 0 0 0
MA0593.1_shift3 (FOXP2)				; oligos_7nt_mkv2_m9 versus MA0593.1 (FOXP2); m=11/33; ncol2=11; w=10; offset=-1; strand=D; shift=3; score=0.590957; ---awGTAAACAra--- ; cor=; Ncor= a 0 0 0 330.0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 332.0 0 0 0 c 0 0 0 113.0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 124.0 0 0 0 g 0 0 0 190.0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 184.0 0 0 0 t 0 0 0 133.0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 126.0 0 0 0
MA0852.2_shift2 (FOXK1)				; oligos_7nt_mkv2_m9 versus MA0852.2 (FOXK1); m=12/33; ncol2=14; w=11; offset=-2; strand=D; shift=2; score=0.562841; --wrkGTAAACAagsv- ; cor=; Ncor= a 0 0 329.0 416.0 247.0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 512.0 185.0 242.0 283.0 0 c 0 0 184.0 175.0 142.0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 199.0 201.0 269.0 288.0 0 g 0 0 258.0 270.0 272.0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 204.0 568.0 362.0 270.0 0 t 0 0 285.0 195.0 395.0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 141.0 102.0 183.0 215.0 0
MA0032.2_shift2 (FOXC1)				; oligos_7nt_mkv2_m9 versus MA0032.2 (FOXC1); m=13/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.558629; --wAwRTMAAyAw---- ; cor=; Ncor= a 0 0 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 0 0 c 0 0 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 0 0 g 0 0 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 0 0 t 0 0 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0 0 0
MA0845.1_shift2 (FOXB1)				; oligos_7nt_mkv2_m9 versus MA0845.1 (FOXB1); m=14/33; ncol2=11; w=9; offset=-2; strand=D; shift=2; score=0.555649; --wAwGTMAAyAt---- ; cor=; Ncor= a 0 0 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 0 0 c 0 0 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 0 0 g 0 0 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 0 0 t 0 0 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0 0 0
MA0702.2_rc_shift5 (LMX1A_rc)				; oligos_7nt_mkv2_m9 versus MA0702.2_rc (LMX1A_rc); m=15/33; ncol2=8; w=8; offset=1; strand=R; shift=5; score=0.553491; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0
MA0614.1_shift5 (Foxj2)				; oligos_7nt_mkv2_m9 versus MA0614.1 (Foxj2); m=16/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.549045; -----rTAAACAa---- ; cor=; Ncor= a 0 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 c 0 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 g 0 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 t 0 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0
MA1489.1_shift5 (FOXN3)				; oligos_7nt_mkv2_m9 versus MA1489.1 (FOXN3); m=17/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.548608; -----GTAAACAA---- ; cor=; Ncor= a 0 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 c 0 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 g 0 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 t 0 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0
MA1487.1_shift3 (FOXE1)				; oligos_7nt_mkv2_m9 versus MA1487.1 (FOXE1); m=18/33; ncol2=15; w=11; offset=-1; strand=D; shift=3; score=0.538914; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0
MA0613.1_shift5 (FOXG1)				; oligos_7nt_mkv2_m9 versus MA0613.1 (FOXG1); m=19/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.537778; -----rTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 g 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0
MA0033.2_shift5 (FOXL1)				; oligos_7nt_mkv2_m9 versus MA0033.2 (FOXL1); m=20/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score= 0.5237; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0
MA0031.1_shift5 (FOXD1)				; oligos_7nt_mkv2_m9 versus MA0031.1 (FOXD1); m=21/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.52045; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 7.0 0 0 0 0 c 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 2.0 0 0 0 0 g 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 3.0 0 0 0 0 t 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 8.0 0 0 0 0
MA0851.1_shift0 (Foxj3)				; oligos_7nt_mkv2_m9 versus MA0851.1 (Foxj3); m=22/33; ncol2=17; w=11; offset=-4; strand=D; shift=0; score=0.519241; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0
MA0157.2_shift5 (FOXO3)				; oligos_7nt_mkv2_m9 versus MA0157.2 (FOXO3); m=23/33; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.519136; -----GTAAACAw---- ; cor=; Ncor= a 0 0 0 0 0 21.0 0.0 532.0 532.0 532.0 15.0 532.0 317.0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 16.0 1.0 10.0 532.0 11.0 12.0 0 0 0 0 g 0 0 0 0 0 532.0 13.0 5.0 0.0 0.0 0.0 0.0 36.0 0 0 0 0 t 0 0 0 0 0 0.0 532.0 1.0 0.0 0.0 3.0 0.0 215.0 0 0 0 0
MA0848.1_shift5 (FOXO4)				; oligos_7nt_mkv2_m9 versus MA0848.1 (FOXO4); m=24/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.493879; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0
MA0042.2_shift5 (FOXI1)				; oligos_7nt_mkv2_m9 versus MA0042.2 (FOXI1); m=25/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.491537; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0 0
MA0030.1_shift0 (FOXF2)				; oligos_7nt_mkv2_m9 versus MA0030.1 (FOXF2); m=26/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.491101; bmaasRTAAACAaw--- ; cor=; Ncor= a 1.0 10.0 17.0 13.0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 7.0 0 0 0 c 10.0 7.0 4.0 5.0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 4.0 0 0 0 g 7.0 5.0 2.0 5.0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 6.0 0 0 0 t 9.0 5.0 4.0 5.0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 10.0 0 0 0
MA0850.1_shift5 (FOXP3)				; oligos_7nt_mkv2_m9 versus MA0850.1 (FOXP3); m=27/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.484369; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 c 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 g 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 t 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0
MA0847.2_shift0 (FOXD2)				; oligos_7nt_mkv2_m9 versus MA0847.2 (FOXD2); m=28/33; ncol2=13; w=9; offset=-4; strand=D; shift=0; score=0.475636; sywAwRTAAAYAw---- ; cor=; Ncor= a 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 0 0 0 0 c 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 0 0 0 0 g 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 0 0 0 0 t 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0 0 0 0 0
MA0849.1_shift5 (FOXO6)				; oligos_7nt_mkv2_m9 versus MA0849.1 (FOXO6); m=29/33; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.473445; -----GTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0 0
MA1607.1_shift0 (Foxl2)				; oligos_7nt_mkv2_m9 versus MA1607.1 (Foxl2); m=30/33; ncol2=14; w=10; offset=-4; strand=D; shift=0; score=0.469831; rwwaTGTAAACAwr--- ; cor=; Ncor= a 6235.0 5913.0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 5229.0 5143.0 0 0 0 c 3031.0 2912.0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 4246.0 4329.0 0 0 0 g 4621.0 3521.0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 3844.0 4529.0 0 0 0 t 4214.0 5755.0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 4782.0 4100.0 0 0 0
MA0853.1_rc_shift0 (Alx4_rc)				; oligos_7nt_mkv2_m9 versus MA0853.1_rc (Alx4_rc); m=31/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.466761; gstdayTAATTArygcg ; cor=; Ncor= a 24.0 23.0 22.0 30.0 42.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 16.0 21.0 10.0 11.0 c 21.0 25.0 19.0 13.0 18.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 29.0 16.0 56.0 15.0 g 43.0 29.0 23.0 28.0 23.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 15.0 44.0 24.0 59.0 t 12.0 23.0 36.0 29.0 17.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 40.0 19.0 10.0 16.0
MA0854.1_rc_shift0 (Alx1_rc)				; oligos_7nt_mkv2_m9 versus MA0854.1_rc (Alx1_rc); m=32/33; ncol2=17; w=11; offset=-4; strand=R; shift=0; score=0.456205; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0
MA0151.1_shift4 (Arid3a)				; oligos_7nt_mkv2_m9 versus MA0151.1 (Arid3a); m=33/33; ncol2=6; w=6; offset=0; strand=D; shift=4; score=0.402164; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m8_shift6 (oligos_6nt_mkv2_m8oligos_6nt_mkv2_m8)				; oligos_6nt_mkv2_m8 (oligos_6nt_mkv2_m8oligos_6nt_mkv2_m8); m=0 (reference); ncol1=10; shift=6; ncol=16; ------rtGAGAAAha ; Alignment reference a 0 0 0 0 0 0 101 13 0 154 0 154 154 154 43 85 c 0 0 0 0 0 0 3 32 0 0 0 0 0 0 52 30 g 0 0 0 0 0 0 44 11 154 0 154 0 0 0 5 34 t 0 0 0 0 0 0 6 98 0 0 0 0 0 0 54 5
MA0508.3_rc_shift6 (PRDM1_rc)				; oligos_6nt_mkv2_m8 versus MA0508.3_rc (PRDM1_rc); m=1/3; ncol2=11; w=10; offset=0; strand=R; shift=6; score=0.739412; ------raGAGAAAGw ; cor=; Ncor= a 0 0 0 0 0 0 19978.0 27294.0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 17272.0 c 0 0 0 0 0 0 7861.0 4098.0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 8768.0 g 0 0 0 0 0 0 17518.0 13567.0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 12288.0 t 0 0 0 0 0 0 10124.0 10522.0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 17153.0
MA1647.1_rc_shift8 (PRDM4_rc)				; oligos_6nt_mkv2_m8 versus MA1647.1_rc (PRDM4_rc); m=2/3; ncol2=11; w=8; offset=2; strand=R; shift=8; score=0.468279; --------twGAAACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 c 0 0 0 0 0 0 0 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 g 0 0 0 0 0 0 0 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 t 0 0 0 0 0 0 0 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0
MA0520.1_shift0 (Stat6)				; oligos_6nt_mkv2_m8 versus MA0520.1 (Stat6); m=3/3; ncol2=15; w=9; offset=-6; strand=D; shift=0; score=0.415673; swyTTCywsaGAAmy- ; cor=; Ncor= a 257.0 665.0 152.0 0.0 13.0 122.0 70.0 664.0 328.0 1153.0 26.0 1852.0 1849.0 621.0 345.0 0 c 663.0 328.0 566.0 0.0 0.0 1680.0 1204.0 21.0 534.0 3.0 0.0 0.0 0.0 540.0 490.0 0 g 482.0 372.0 436.0 0.0 0.0 0.0 0.0 219.0 898.0 416.0 1796.0 0.0 3.0 398.0 235.0 0 t 450.0 487.0 698.0 1852.0 1839.0 50.0 578.0 948.0 92.0 280.0 30.0 0.0 0.0 293.0 782.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m19_shift0 (dyads_m19dyads_m19)				; dyads_m19 (dyads_m19dyads_m19); m=0 (reference); ncol1=15; shift=0; ncol=15; rvdGACAGCTGvyks ; Alignment reference a 16 14 17 2 48 0 50 0 1 1 0 16 9 10 9 c 8 18 3 0 0 49 0 0 49 0 0 16 13 8 15 g 16 14 14 47 2 0 0 48 0 0 50 14 10 17 17 t 10 4 16 1 0 1 0 2 0 49 0 4 18 15 9
MA0499.2_rc_shift1 (MYOD1_rc)				; dyads_m19 versus MA0499.2_rc (MYOD1_rc); m=1/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.734892; -rkrACAGGTGcwg- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA0832.1_shift1 (Tcf21)				; dyads_m19 versus MA0832.1 (Tcf21); m=2/34; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.719755; -ryAACAGCTGTTry ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA1485.1_rc_shift1 (FERD3L_rc)				; dyads_m19 versus MA1485.1_rc (FERD3L_rc); m=3/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.705903; -GTrACAGCTGkyrC ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA1641.1_shift2 (MYF5)				; dyads_m19 versus MA1641.1 (MYF5); m=4/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.705693; --gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_shift2 (Ptf1a(var.2))				; dyads_m19 versus MA1619.1 (Ptf1a(var.2)); m=5/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.699264; --rmaCAGCTGtky- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA0500.2_rc_shift2 (MYOG_rc)				; dyads_m19 versus MA0500.2_rc (MYOG_rc); m=6/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.684463; --sarCAGCTGyts- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA1621.1_rc_shift1 (Rbpjl_rc)				; dyads_m19 versus MA1621.1_rc (Rbpjl_rc); m=7/34; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.681461; -grsaCAGGTGtkbs ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0
MA0521.1_shift3 (Tcf12)				; dyads_m19 versus MA0521.1 (Tcf12); m=8/34; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.680499; ---rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA0745.2_rc_shift1 (SNAI2_rc)				; dyads_m19 versus MA0745.2_rc (SNAI2_rc); m=9/34; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.648845; -rykACAGGTGcrt- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA1123.2_rc_shift2 (TWIST1_rc)				; dyads_m19 versus MA1123.2_rc (TWIST1_rc); m=10/34; ncol2=13; w=13; offset=2; strand=R; shift=2; score=0.635483; --avaCATCTGGwwt ; cor=; Ncor= a 0 0 7736.0 8588.0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 852.0 9428.0 8259.0 6758.0 c 0 0 6213.0 7273.0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 2336.0 5772.0 5722.0 6485.0 g 0 0 6561.0 7402.0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 20412.0 4597.0 5530.0 5761.0 t 0 0 6823.0 4070.0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0 3733.0 7536.0 7822.0 8329.0
MA1618.1_shift2 (Ptf1a)				; dyads_m19 versus MA1618.1 (Ptf1a); m=11/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.635463; --dmaCAGATGttkh ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0
MA1109.1_shift2 (NEUROD1)				; dyads_m19 versus MA1109.1 (NEUROD1); m=12/34; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.634618; --graCAGATGGyrs ; cor=; Ncor= a 0 0 561.0 755.0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 373.0 692.0 538.0 c 0 0 429.0 323.0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 911.0 540.0 591.0 g 0 0 726.0 906.0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 418.0 599.0 628.0 t 0 0 566.0 298.0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 580.0 451.0 525.0
MA1571.1_shift2 (TGIF2LX)				; dyads_m19 versus MA1571.1 (TGIF2LX); m=13/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.619052; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0
MA0796.1_shift2 (TGIF1)				; dyads_m19 versus MA0796.1 (TGIF1); m=14/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.616631; --TGACAGCTGTCA- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0
MA1572.1_rc_shift2 (TGIF2LY_rc)				; dyads_m19 versus MA1572.1_rc (TGIF2LY_rc); m=15/34; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.610971; --TGACAgcTGTCA- ; cor=; Ncor= a 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA1642.1_shift1 (NEUROG2(var.2))				; dyads_m19 versus MA1642.1 (NEUROG2(var.2)); m=16/34; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.609363; -rrraCAGATGGyv- ; cor=; Ncor= a 0 8690.0 9047.0 12089.0 16448.0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 6665.0 9464.0 0 c 0 7353.0 6843.0 6467.0 8154.0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 10441.0 9034.0 0 g 0 10813.0 10123.0 11114.0 8039.0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 7581.0 8709.0 0 t 0 7535.0 8378.0 4721.0 1750.0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 9704.0 7184.0 0
MA0797.1_shift2 (TGIF2)				; dyads_m19 versus MA0797.1 (TGIF2); m=17/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.606966; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; dyads_m19 versus MA1467.1_rc (ATOH1(var.2)_rc); m=18/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.604325; ---RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1593.1_shift2 (ZNF317)				; dyads_m19 versus MA1593.1 (ZNF317); m=19/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.602001; --wrACAGCAGAyw- ; cor=; Ncor= a 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA1620.1_shift2 (Ptf1a(var.3))				; dyads_m19 versus MA1620.1 (Ptf1a(var.3)); m=20/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.586245; --rmaCACCTGtky- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; dyads_m19 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=21/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.581992; ---rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; dyads_m19 versus MA1635.1 (BHLHE22(var.2)); m=22/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.571426; ---csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA0783.1_shift2 (PKNOX2)				; dyads_m19 versus MA0783.1 (PKNOX2); m=23/34; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.570565; --TGACAGsTGTCA- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; dyads_m19 versus MA1100.2_rc (ASCL1_rc); m=24/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.553592; ---rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0816.1_rc_shift3 (Ascl2_rc)				; dyads_m19 versus MA0816.1_rc (Ascl2_rc); m=25/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.546692; ---rrCAGCTGyt-- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0
MA0691.1_shift3 (TFAP4)				; dyads_m19 versus MA0691.1 (TFAP4); m=26/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.545617; ---AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0665.1_shift3 (MSC)				; dyads_m19 versus MA0665.1 (MSC); m=27/34; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.540297; ---AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA0667.1_rc_shift3 (MYF6_rc)				; dyads_m19 versus MA0667.1_rc (MYF6_rc); m=28/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.516475; ---RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA0048.2_rc_shift3 (NHLH1_rc)				; dyads_m19 versus MA0048.2_rc (NHLH1_rc); m=29/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.496106; ---mGCAGCTGCg-- ; cor=; Ncor= a 0 0 0 1489.0 350.0 1.0 2166.0 0.0 114.0 0.0 0.0 142.0 111.0 0 0 c 0 0 0 2166.0 102.0 2166.0 4.0 124.0 2166.0 1.0 0.0 2166.0 181.0 0 0 g 0 0 0 736.0 2166.0 4.0 4.0 2166.0 301.0 3.0 2166.0 179.0 2166.0 0 0 t 0 0 0 308.0 296.0 2.0 0.0 96.0 0.0 2166.0 3.0 461.0 788.0 0 0
MA0820.1_rc_shift3 (FIGLA_rc)				; dyads_m19 versus MA0820.1_rc (FIGLA_rc); m=30/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.490597; ---wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA0100.3_rc_shift3 (MYB_rc)				; dyads_m19 versus MA0100.3_rc (MYB_rc); m=31/34; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.467977; ---kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0
MA0774.1_shift1 (MEIS2)				; dyads_m19 versus MA0774.1 (MEIS2); m=32/34; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.445275; -tTGACAGs------ ; cor=; Ncor= a 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0
MA0775.1_shift1 (MEIS3)				; dyads_m19 versus MA0775.1 (MEIS3); m=33/34; ncol2=8; w=8; offset=1; strand=D; shift=1; score=0.426208; -wTGACAgs------ ; cor=; Ncor= a 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0
MA0498.2_shift1 (MEIS1)				; dyads_m19 versus MA0498.2 (MEIS1); m=34/34; ncol2=7; w=7; offset=1; strand=D; shift=1; score=0.401067; -wTGACAg------- ; cor=; Ncor= a 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m22_shift4 (oligos_8nt_mkv2_m22oligos_8nt_mkv2_m22)				; oligos_8nt_mkv2_m22 (oligos_8nt_mkv2_m22oligos_8nt_mkv2_m22); m=0 (reference); ncol1=15; shift=4; ncol=19; ----rvtGACAGCTGmhkg ; Alignment reference a 0 0 0 0 11 7 4 0 28 0 28 1 0 0 0 10 9 5 4 c 0 0 0 0 2 11 3 1 0 28 0 0 28 0 0 17 9 4 5 g 0 0 0 0 10 9 4 27 0 0 0 27 0 0 28 0 3 9 13 t 0 0 0 0 5 1 17 0 0 0 0 0 0 28 0 1 7 10 6
MA0499.2_rc_shift5 (MYOD1_rc)				; oligos_8nt_mkv2_m22 versus MA0499.2_rc (MYOD1_rc); m=1/28; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.733536; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA1485.1_rc_shift5 (FERD3L_rc)				; oligos_8nt_mkv2_m22 versus MA1485.1_rc (FERD3L_rc); m=2/28; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.679789; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA1641.1_shift6 (MYF5)				; oligos_8nt_mkv2_m22 versus MA1641.1 (MYF5); m=3/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.676355; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA0832.1_shift5 (Tcf21)				; oligos_8nt_mkv2_m22 versus MA0832.1 (Tcf21); m=4/28; ncol2=14; w=14; offset=1; strand=D; shift=5; score=0.676329; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA1619.1_shift6 (Ptf1a(var.2))				; oligos_8nt_mkv2_m22 versus MA1619.1 (Ptf1a(var.2)); m=5/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.670142; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA0500.2_rc_shift6 (MYOG_rc)				; oligos_8nt_mkv2_m22 versus MA0500.2_rc (MYOG_rc); m=6/28; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.669923; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0521.1_shift7 (Tcf12)				; oligos_8nt_mkv2_m22 versus MA0521.1 (Tcf12); m=7/28; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.668031; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA0745.2_rc_shift5 (SNAI2_rc)				; oligos_8nt_mkv2_m22 versus MA0745.2_rc (SNAI2_rc); m=8/28; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.653751; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA1571.1_rc_shift6 (TGIF2LX_rc)				; oligos_8nt_mkv2_m22 versus MA1571.1_rc (TGIF2LX_rc); m=9/28; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.631605; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA0796.1_shift6 (TGIF1)				; oligos_8nt_mkv2_m22 versus MA0796.1 (TGIF1); m=10/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.630762; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0
MA1572.1_rc_shift6 (TGIF2LY_rc)				; oligos_8nt_mkv2_m22 versus MA1572.1_rc (TGIF2LY_rc); m=11/28; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.623813; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_shift6 (TGIF2)				; oligos_8nt_mkv2_m22 versus MA0797.1 (TGIF2); m=12/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.621895; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA1593.1_shift6 (ZNF317)				; oligos_8nt_mkv2_m22 versus MA1593.1 (ZNF317); m=13/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.597276; ------wrACAGCAGAyw- ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA0783.1_shift6 (PKNOX2)				; oligos_8nt_mkv2_m22 versus MA0783.1 (PKNOX2); m=14/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.585608; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA1467.1_rc_shift7 (ATOH1(var.2)_rc)				; oligos_8nt_mkv2_m22 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.577977; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1620.1_shift6 (Ptf1a(var.3))				; oligos_8nt_mkv2_m22 versus MA1620.1 (Ptf1a(var.3)); m=16/28; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.561855; ------rmaCACCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 c 0 0 0 0 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 g 0 0 0 0 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 t 0 0 0 0 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0
MA1635.1_shift7 (BHLHE22(var.2))				; oligos_8nt_mkv2_m22 versus MA1635.1 (BHLHE22(var.2)); m=17/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.560173; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)				; oligos_8nt_mkv2_m22 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=18/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.557985; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA1100.2_rc_shift7 (ASCL1_rc)				; oligos_8nt_mkv2_m22 versus MA1100.2_rc (ASCL1_rc); m=19/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.554756; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0816.1_shift7 (Ascl2)				; oligos_8nt_mkv2_m22 versus MA0816.1 (Ascl2); m=20/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.543813; -------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0691.1_shift7 (TFAP4)				; oligos_8nt_mkv2_m22 versus MA0691.1 (TFAP4); m=21/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.521335; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0665.1_shift7 (MSC)				; oligos_8nt_mkv2_m22 versus MA0665.1 (MSC); m=22/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.515097; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA0048.2_shift7 (NHLH1)				; oligos_8nt_mkv2_m22 versus MA0048.2 (NHLH1); m=23/28; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.495907; -------cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0
MA0667.1_rc_shift7 (MYF6_rc)				; oligos_8nt_mkv2_m22 versus MA0667.1_rc (MYF6_rc); m=24/28; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.490751; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA0774.1_shift5 (MEIS2)				; oligos_8nt_mkv2_m22 versus MA0774.1 (MEIS2); m=25/28; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.467957; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0
MA0775.1_shift5 (MEIS3)				; oligos_8nt_mkv2_m22 versus MA0775.1 (MEIS3); m=26/28; ncol2=8; w=8; offset=1; strand=D; shift=5; score= 0.4493; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0
MA0782.2_shift0 (PKNOX1)				; oligos_8nt_mkv2_m22 versus MA0782.2 (PKNOX1); m=27/28; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.431674; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0
MA0498.2_shift5 (MEIS1)				; oligos_8nt_mkv2_m22 versus MA0498.2 (MEIS1); m=28/28; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.423086; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m17_shift4 (oligos_8nt_mkv2_m17oligos_8nt_mkv2_m17)				; oligos_8nt_mkv2_m17 (oligos_8nt_mkv2_m17oligos_8nt_mkv2_m17); m=0 (reference); ncol1=15; shift=4; ncol=19; ----rstGACAGCTGmhkg ; Alignment reference a 0 0 0 0 11 6 4 0 27 0 27 0 0 0 0 10 9 4 4 c 0 0 0 0 2 11 2 1 0 27 0 0 27 0 0 16 8 4 5 g 0 0 0 0 10 9 4 26 0 0 0 27 0 0 27 0 3 9 12 t 0 0 0 0 4 1 17 0 0 0 0 0 0 27 0 1 7 10 6
MA0499.2_rc_shift5 (MYOD1_rc)				; oligos_8nt_mkv2_m17 versus MA0499.2_rc (MYOD1_rc); m=1/27; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.732681; -----rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA1485.1_rc_shift5 (FERD3L_rc)				; oligos_8nt_mkv2_m17 versus MA1485.1_rc (FERD3L_rc); m=2/27; ncol2=14; w=14; offset=1; strand=R; shift=5; score=0.682478; -----GTrACAGCTGkyrC ; cor=; Ncor= a 0 0 0 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 c 0 0 0 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 g 0 0 0 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 t 0 0 0 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0
MA0832.1_shift5 (Tcf21)				; oligos_8nt_mkv2_m17 versus MA0832.1 (Tcf21); m=3/27; ncol2=14; w=14; offset=1; strand=D; shift=5; score=0.676548; -----ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA1641.1_shift6 (MYF5)				; oligos_8nt_mkv2_m17 versus MA1641.1 (MYF5); m=4/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.676282; ------gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1619.1_shift6 (Ptf1a(var.2))				; oligos_8nt_mkv2_m17 versus MA1619.1 (Ptf1a(var.2)); m=5/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.670336; ------rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA0500.2_rc_shift6 (MYOG_rc)				; oligos_8nt_mkv2_m17 versus MA0500.2_rc (MYOG_rc); m=6/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.66948; ------sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0521.1_shift7 (Tcf12)				; oligos_8nt_mkv2_m17 versus MA0521.1 (Tcf12); m=7/27; ncol2=11; w=11; offset=3; strand=D; shift=7; score=0.669182; -------rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA0745.2_rc_shift5 (SNAI2_rc)				; oligos_8nt_mkv2_m17 versus MA0745.2_rc (SNAI2_rc); m=8/27; ncol2=13; w=13; offset=1; strand=R; shift=5; score=0.652737; -----rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA0796.1_shift6 (TGIF1)				; oligos_8nt_mkv2_m17 versus MA0796.1 (TGIF1); m=9/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.62636; ------TGACAGCTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 c 0 0 0 0 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 g 0 0 0 0 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 t 0 0 0 0 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0
MA1571.1_rc_shift6 (TGIF2LX_rc)				; oligos_8nt_mkv2_m17 versus MA1571.1_rc (TGIF2LX_rc); m=10/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.626344; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 232.0 66.0 2539.0 22.0 2539.0 38.0 362.0 40.0 59.0 428.0 47.0 2539.0 0 c 0 0 0 0 0 0 361.0 172.0 72.0 2539.0 23.0 554.0 1566.0 316.0 29.0 132.0 2539.0 145.0 0 g 0 0 0 0 0 0 132.0 2539.0 127.0 23.0 318.0 1568.0 575.0 18.0 2539.0 64.0 187.0 355.0 0 t 0 0 0 0 0 0 2539.0 45.0 428.0 64.0 37.0 380.0 37.0 2539.0 32.0 2539.0 52.0 237.0 0
MA1572.1_rc_shift6 (TGIF2LY_rc)				; oligos_8nt_mkv2_m17 versus MA1572.1_rc (TGIF2LY_rc); m=11/27; ncol2=12; w=12; offset=2; strand=R; shift=6; score=0.618351; ------TGACAgcTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 679.0 172.0 5209.0 121.0 5209.0 138.0 1018.0 110.0 144.0 1197.0 104.0 5209.0 0 c 0 0 0 0 0 0 807.0 259.0 145.0 5209.0 73.0 1188.0 2794.0 833.0 66.0 349.0 5209.0 415.0 0 g 0 0 0 0 0 0 362.0 5209.0 371.0 61.0 848.0 2850.0 1267.0 37.0 5209.0 163.0 270.0 836.0 0 t 0 0 0 0 0 0 5209.0 135.0 1084.0 175.0 140.0 1033.0 130.0 5209.0 123.0 5209.0 162.0 736.0 0
MA0797.1_shift6 (TGIF2)				; oligos_8nt_mkv2_m17 versus MA0797.1 (TGIF2); m=12/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.616961; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 c 0 0 0 0 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 g 0 0 0 0 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 t 0 0 0 0 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0
MA1593.1_shift6 (ZNF317)				; oligos_8nt_mkv2_m17 versus MA1593.1 (ZNF317); m=13/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.599527; ------wrACAGCAGAyw- ; cor=; Ncor= a 0 0 0 0 0 0 2959.0 4274.0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 2072.0 3852.0 0 c 0 0 0 0 0 0 1201.0 2141.0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 4399.0 1709.0 0 g 0 0 0 0 0 0 1985.0 3670.0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 1334.0 1481.0 0 t 0 0 0 0 0 0 5318.0 1378.0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0 3658.0 4421.0 0
MA0783.1_shift6 (PKNOX2)				; oligos_8nt_mkv2_m17 versus MA0783.1 (PKNOX2); m=14/27; ncol2=12; w=12; offset=2; strand=D; shift=6; score=0.581481; ------TGACAGsTGTCA- ; cor=; Ncor= a 0 0 0 0 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 c 0 0 0 0 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 g 0 0 0 0 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 t 0 0 0 0 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0
MA1467.1_rc_shift7 (ATOH1(var.2)_rc)				; oligos_8nt_mkv2_m17 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.57887; -------RACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 g 0 0 0 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 t 0 0 0 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0
MA1635.1_shift7 (BHLHE22(var.2))				; oligos_8nt_mkv2_m17 versus MA1635.1 (BHLHE22(var.2)); m=16/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.561529; -------csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA1472.1_rc_shift7 (BHLHA15(var.2)_rc)				; oligos_8nt_mkv2_m17 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=17/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.558776; -------rrCAGCTGbt-- ; cor=; Ncor= a 0 0 0 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 c 0 0 0 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 g 0 0 0 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 t 0 0 0 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0
MA1100.2_rc_shift7 (ASCL1_rc)				; oligos_8nt_mkv2_m17 versus MA1100.2_rc (ASCL1_rc); m=18/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.554161; -------rgCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 c 0 0 0 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 g 0 0 0 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 t 0 0 0 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0
MA0816.1_shift7 (Ascl2)				; oligos_8nt_mkv2_m17 versus MA0816.1 (Ascl2); m=19/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.543852; -------arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0691.1_shift7 (TFAP4)				; oligos_8nt_mkv2_m17 versus MA0691.1 (TFAP4); m=20/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.524183; -------AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0665.1_shift7 (MSC)				; oligos_8nt_mkv2_m17 versus MA0665.1 (MSC); m=21/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.516721; -------AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 c 0 0 0 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 g 0 0 0 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 t 0 0 0 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0
MA0048.2_shift7 (NHLH1)				; oligos_8nt_mkv2_m17 versus MA0048.2 (NHLH1); m=22/27; ncol2=10; w=10; offset=3; strand=D; shift=7; score=0.496396; -------cGCAGCTGCk-- ; cor=; Ncor= a 0 0 0 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 c 0 0 0 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 g 0 0 0 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 t 0 0 0 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0
MA0667.1_rc_shift7 (MYF6_rc)				; oligos_8nt_mkv2_m17 versus MA0667.1_rc (MYF6_rc); m=23/27; ncol2=10; w=10; offset=3; strand=R; shift=7; score=0.491714; -------RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA0774.1_shift5 (MEIS2)				; oligos_8nt_mkv2_m17 versus MA0774.1 (MEIS2); m=24/27; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.468766; -----tTGACAGs------ ; cor=; Ncor= a 0 0 0 0 0 408.0 31.0 0.0 1351.0 9.0 1351.0 83.0 157.0 0 0 0 0 0 0 c 0 0 0 0 0 264.0 3.0 0.0 3.0 1351.0 7.0 98.0 701.0 0 0 0 0 0 0 g 0 0 0 0 0 314.0 40.0 1351.0 25.0 0.0 4.0 1351.0 650.0 0 0 0 0 0 0 t 0 0 0 0 0 1351.0 1351.0 0.0 62.0 5.0 0.0 67.0 88.0 0 0 0 0 0 0
MA0775.1_shift5 (MEIS3)				; oligos_8nt_mkv2_m17 versus MA0775.1 (MEIS3); m=25/27; ncol2=8; w=8; offset=1; strand=D; shift=5; score=0.448414; -----wTGACAgs------ ; cor=; Ncor= a 0 0 0 0 0 1866.0 465.0 0.0 7165.0 53.0 7165.0 1690.0 960.0 0 0 0 0 0 0 c 0 0 0 0 0 60.0 383.0 6.0 20.0 7165.0 8.0 1889.0 2342.0 0 0 0 0 0 0 g 0 0 0 0 0 1788.0 260.0 7165.0 455.0 8.0 468.0 7165.0 2888.0 0 0 0 0 0 0 t 0 0 0 0 0 3451.0 7165.0 0.0 53.0 160.0 145.0 2094.0 975.0 0 0 0 0 0 0
MA0782.2_shift0 (PKNOX1)				; oligos_8nt_mkv2_m17 versus MA0782.2 (PKNOX1); m=26/27; ncol2=15; w=11; offset=-4; strand=D; shift=0; score=0.434985; twTGAgTGACAGctr---- ; cor=; Ncor= a 9811.0 10245.0 5222.0 1654.0 36759.0 2325.0 1140.0 555.0 36374.0 651.0 33982.0 2745.0 8452.0 8617.0 10522.0 0 0 0 0 c 9503.0 9828.0 1625.0 1160.0 678.0 4123.0 878.0 1004.0 410.0 37846.0 944.0 4759.0 16341.0 9386.0 9268.0 0 0 0 0 g 9599.0 9535.0 3322.0 36106.0 1330.0 26182.0 1027.0 37713.0 2459.0 580.0 2408.0 27367.0 9128.0 9060.0 10296.0 0 0 0 0 t 11050.0 10355.0 29794.0 1043.0 1196.0 7333.0 36918.0 691.0 720.0 886.0 2629.0 5092.0 6042.0 12900.0 9877.0 0 0 0 0
MA0498.2_shift5 (MEIS1)				; oligos_8nt_mkv2_m17 versus MA0498.2 (MEIS1); m=27/27; ncol2=7; w=7; offset=1; strand=D; shift=5; score=0.420312; -----wTGACAg------- ; cor=; Ncor= a 0 0 0 0 0 23727.0 8690.0 0.0 77159.0 0.0 77159.0 17224.0 0 0 0 0 0 0 0 c 0 0 0 0 0 18797.0 5575.0 1249.0 2903.0 77159.0 0.0 14864.0 0 0 0 0 0 0 0 g 0 0 0 0 0 9714.0 3174.0 77159.0 672.0 0.0 9263.0 29965.0 0 0 0 0 0 0 0 t 0 0 0 0 0 24921.0 77159.0 0.0 0.0 1155.0 3861.0 15106.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m14_shift5 (oligos_8nt_mkv2_m14oligos_8nt_mkv2_m14)				; oligos_8nt_mkv2_m14 (oligos_8nt_mkv2_m14oligos_8nt_mkv2_m14); m=0 (reference); ncol1=12; shift=5; ncol=17; -----AwCATGGAAAAT ; Alignment reference a 0 0 0 0 0 68 46 1 74 0 1 0 81 83 73 78 3 c 0 0 0 0 0 1 3 79 0 11 2 0 0 0 0 3 0 g 0 0 0 0 0 14 0 0 9 0 80 83 1 0 0 0 1 t 0 0 0 0 0 0 34 3 0 72 0 0 1 0 10 2 79
MA0606.1_rc_shift7 (NFAT5_rc)				; oligos_8nt_mkv2_m14 versus MA0606.1_rc (NFAT5_rc); m=1/6; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.731885; -------wrTGGAAAat ; cor=; Ncor= a 0 0 0 0 0 0 0 322.0 548.0 85.0 89.0 85.0 827.0 1000.0 1000.0 649.0 210.0 c 0 0 0 0 0 0 0 248.0 41.0 0.0 85.0 0.0 0.0 0.0 0.0 88.0 210.0 g 0 0 0 0 0 0 0 163.0 287.0 84.0 826.0 915.0 84.0 0.0 0.0 88.0 210.0 t 0 0 0 0 0 0 0 268.0 124.0 831.0 0.0 0.0 89.0 0.0 0.0 176.0 371.0
MA1525.1_shift7 (NFATC4)				; oligos_8nt_mkv2_m14 versus MA1525.1 (NFATC4); m=2/6; ncol2=10; w=10; offset=2; strand=D; shift=7; score=0.714388; -------aryGGAAAmw ; cor=; Ncor= a 0 0 0 0 0 0 0 1652.0 4349.0 95.0 0.0 0.0 4349.0 4349.0 4349.0 4349.0 1132.0 c 0 0 0 0 0 0 0 916.0 329.0 1534.0 0.0 0.0 39.0 0.0 1084.0 3276.0 632.0 g 0 0 0 0 0 0 0 963.0 2369.0 0.0 4349.0 4349.0 0.0 0.0 127.0 1789.0 348.0 t 0 0 0 0 0 0 0 819.0 843.0 2816.0 0.0 0.0 0.0 0.0 259.0 1292.0 2239.0
MA0625.1_rc_shift7 (NFATC3_rc)				; oligos_8nt_mkv2_m14 versus MA0625.1_rc (NFATC3_rc); m=3/6; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.699815; -------aryGGAAAaw ; cor=; Ncor= a 0 0 0 0 0 0 0 400.0 443.0 67.0 10.0 30.0 966.0 971.0 770.0 472.0 348.0 c 0 0 0 0 0 0 0 173.0 133.0 342.0 23.0 1.0 9.0 5.0 73.0 168.0 139.0 g 0 0 0 0 0 0 0 211.0 251.0 39.0 959.0 933.0 23.0 10.0 40.0 181.0 93.0 t 0 0 0 0 0 0 0 215.0 173.0 552.0 8.0 36.0 3.0 14.0 117.0 179.0 421.0
MA0624.1_rc_shift7 (NFATC1_rc)				; oligos_8nt_mkv2_m14 versus MA0624.1_rc (NFATC1_rc); m=4/6; ncol2=10; w=10; offset=2; strand=R; shift=7; score=0.680928; -------aryGGAAaaw ; cor=; Ncor= a 0 0 0 0 0 0 0 349.0 383.0 83.0 18.0 7.0 935.0 939.0 660.0 392.0 316.0 c 0 0 0 0 0 0 0 194.0 126.0 357.0 5.0 8.0 15.0 7.0 122.0 189.0 167.0 g 0 0 0 0 0 0 0 227.0 262.0 45.0 967.0 971.0 29.0 35.0 60.0 193.0 134.0 t 0 0 0 0 0 0 0 230.0 230.0 516.0 9.0 14.0 21.0 19.0 158.0 226.0 383.0
MA0152.1_rc_shift9 (NFATC2_rc)				; oligos_8nt_mkv2_m14 versus MA0152.1_rc (NFATC2_rc); m=5/6; ncol2=7; w=7; offset=4; strand=R; shift=9; score=0.574822; ---------TGGAAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4.0 0.0 0.0 26.0 24.0 21.0 20.0 0 c 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 2.0 0 g 0 0 0 0 0 0 0 0 0 3.0 26.0 25.0 0.0 1.0 2.0 1.0 0 t 0 0 0 0 0 0 0 0 0 18.0 0.0 1.0 0.0 1.0 1.0 3.0 0
MA1616.1_shift0 (Prdm15)				; oligos_8nt_mkv2_m14 versus MA1616.1 (Prdm15); m=6/6; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.420579; rrgAAAACCTGGAry-- ; cor=; Ncor= a 638.0 624.0 252.0 2011.0 2121.0 1942.0 1801.0 67.0 222.0 220.0 19.0 64.0 1531.0 687.0 540.0 0 0 c 486.0 329.0 325.0 60.0 34.0 47.0 138.0 1941.0 1886.0 361.0 7.0 23.0 314.0 438.0 635.0 0 0 g 560.0 920.0 1333.0 135.0 58.0 200.0 152.0 101.0 107.0 28.0 2199.0 2126.0 220.0 748.0 460.0 0 0 t 553.0 364.0 327.0 31.0 24.0 48.0 146.0 128.0 22.0 1628.0 12.0 24.0 172.0 364.0 602.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m7_shift5 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7)				; oligos_6nt_mkv2_m7 (oligos_6nt_mkv2_m7oligos_6nt_mkv2_m7); m=0 (reference); ncol1=10; shift=5; ncol=16; -----hgCCTCCCwa- ; Alignment reference a 0 0 0 0 0 10 6 0 0 0 0 0 0 17 16 0 c 0 0 0 0 0 10 7 40 40 0 40 40 40 6 9 0 g 0 0 0 0 0 5 19 0 0 0 0 0 0 5 8 0 t 0 0 0 0 0 15 8 0 0 40 0 0 0 12 7 0
MA0528.2_rc_shift4 (ZNF263_rc)				; oligos_6nt_mkv2_m7 versus MA0528.2_rc (ZNF263_rc); m=1/9; ncol2=12; w=10; offset=-1; strand=R; shift=4; score=0.727169; ----csTCCTCCCcsc ; cor=; Ncor= a 0 0 0 0 11103.0 6566.0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 8247.0 12535.0 9733.0 c 0 0 0 0 25115.0 24825.0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 28912.0 17883.0 20283.0 g 0 0 0 0 11689.0 15413.0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 6183.0 14909.0 13040.0 t 0 0 0 0 8436.0 9539.0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 13001.0 11016.0 13287.0
MA1653.1_shift3 (ZNF148)				; oligos_6nt_mkv2_m7 versus MA1653.1 (ZNF148); m=2/9; ncol2=12; w=10; offset=-2; strand=D; shift=3; score=0.64305; ---ysCCCCTCCCcc- ; cor=; Ncor= a 0 0 0 1399.0 1263.0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 4593.0 4057.0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 2241.0 3215.0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 2966.0 2664.0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA0599.1_shift4 (KLF5)				; oligos_6nt_mkv2_m7 versus MA0599.1 (KLF5); m=3/9; ncol2=10; w=9; offset=-1; strand=D; shift=4; score=0.604541; ----gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA1522.1_shift3 (MAZ)				; oligos_6nt_mkv2_m7 versus MA1522.1 (MAZ); m=4/9; ncol2=11; w=9; offset=-2; strand=D; shift=3; score=0.597204; ---ssCCCCTCCcc-- ; cor=; Ncor= a 0 0 0 2480.0 1819.0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 2016.0 0 0 c 0 0 0 5198.0 5068.0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 6775.0 0 0 g 0 0 0 4277.0 5163.0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 2539.0 0 0 t 0 0 0 3108.0 3013.0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 3733.0 0 0
MA1627.1_shift5 (Wt1)				; oligos_6nt_mkv2_m7 versus MA1627.1 (Wt1); m=5/9; ncol2=14; w=10; offset=0; strand=D; shift=5; score=0.583619; -----cycCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 876.0 667.0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 1881.0 1630.0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 794.0 1161.0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 1140.0 1233.0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA1596.1_shift0 (ZNF460)				; oligos_6nt_mkv2_m7 versus MA1596.1 (ZNF460); m=6/9; ncol2=16; w=10; offset=-5; strand=D; shift=0; score=0.574015; rCCTCmGCCTCCCrrG ; cor=; Ncor= a 412.0 49.0 19.0 27.0 17.0 851.0 61.0 6.0 1.0 13.0 3.0 5.0 12.0 516.0 987.0 243.0 c 131.0 1264.0 1460.0 218.0 1519.0 495.0 23.0 1588.0 1596.0 12.0 1584.0 1583.0 1533.0 110.0 175.0 158.0 g 1023.0 185.0 67.0 83.0 47.0 181.0 1493.0 7.0 9.0 17.0 15.0 15.0 27.0 930.0 421.0 1147.0 t 46.0 114.0 66.0 1284.0 29.0 85.0 35.0 11.0 6.0 1570.0 10.0 9.0 40.0 56.0 29.0 64.0
MA1587.1_shift1 (ZNF135)				; oligos_6nt_mkv2_m7 versus MA1587.1 (ZNF135); m=7/9; ncol2=14; w=10; offset=-4; strand=D; shift=1; score=0.517299; -cCTCGACCTCCyrr- ; cor=; Ncor= a 0 49.0 16.0 4.0 7.0 60.0 886.0 17.0 1.0 1.0 3.0 36.0 55.0 303.0 449.0 0 c 0 595.0 858.0 37.0 772.0 25.0 3.0 896.0 939.0 6.0 936.0 800.0 399.0 66.0 35.0 0 g 0 122.0 22.0 15.0 10.0 862.0 52.0 26.0 2.0 2.0 6.0 7.0 48.0 523.0 421.0 0 t 0 182.0 52.0 892.0 159.0 1.0 7.0 9.0 6.0 939.0 3.0 105.0 446.0 56.0 43.0 0
MA1630.1_rc_shift7 (Znf281_rc)				; oligos_6nt_mkv2_m7 versus MA1630.1_rc (Znf281_rc); m=8/9; ncol2=11; w=8; offset=2; strand=R; shift=7; score=0.490405; -------CcTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 0 0 315.0 1103.0 11.0 52.0 29.0 23.0 24.0 12.0 6298.0 c 0 0 0 0 0 0 0 5523.0 4312.0 8.0 6457.0 6402.0 6378.0 6356.0 6449.0 29.0 g 0 0 0 0 0 0 0 356.0 418.0 45.0 41.0 115.0 131.0 163.0 88.0 233.0 t 0 0 0 0 0 0 0 374.0 735.0 6504.0 18.0 22.0 36.0 25.0 19.0 8.0
MA1578.1_shift7 (VEZF1)				; oligos_6nt_mkv2_m7 versus MA1578.1 (VEZF1); m=9/9; ncol2=10; w=8; offset=2; strand=D; shift=7; score=0.48657; -------CCCCCCmyt ; cor=; Ncor= a 0 0 0 0 0 0 0 71.0 1.0 4.0 2.0 6.0 10.0 406.0 44.0 240.0 c 0 0 0 0 0 0 0 790.0 997.0 995.0 997.0 989.0 977.0 357.0 550.0 171.0 g 0 0 0 0 0 0 0 137.0 0.0 0.0 0.0 0.0 3.0 110.0 70.0 211.0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 4.0 8.0 125.0 334.0 377.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m8_shift0 (dyads_m8dyads_m8)				; dyads_m8 (dyads_m8dyads_m8); m=0 (reference); ncol1=15; shift=0; ncol=15; bsCwCAGCTGTCybk ; Alignment reference a 3 4 3 11 0 20 0 1 0 0 3 0 4 0 2 c 6 7 17 2 20 0 0 18 0 0 0 17 7 6 3 g 5 5 0 2 0 0 20 0 0 20 0 0 2 7 5 t 6 4 0 5 0 0 0 1 20 0 17 3 7 7 10
MA0832.1_rc_shift0 (Tcf21_rc)				; dyads_m8 versus MA0832.1_rc (Tcf21_rc); m=1/26; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.72667; ryAACAGCTGTTry- ; cor=; Ncor= a 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA1641.1_shift1 (MYF5)				; dyads_m8 versus MA1641.1 (MYF5); m=2/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.722314; -gvaCAGCTGtbc-- ; cor=; Ncor= a 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0
MA1619.1_shift1 (Ptf1a(var.2))				; dyads_m8 versus MA1619.1 (Ptf1a(var.2)); m=3/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.720857; -rmaCAGCTGtky-- ; cor=; Ncor= a 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA1621.1_shift0 (Rbpjl)				; dyads_m8 versus MA1621.1 (Rbpjl); m=4/26; ncol2=14; w=14; offset=0; strand=D; shift=0; score=0.702627; svmaCACCTGtsyc- ; cor=; Ncor= a 2006.0 2466.0 3369.0 6005.0 139.0 9386.0 84.0 234.0 63.0 102.0 569.0 1539.0 2273.0 2082.0 0 c 2881.0 2427.0 3117.0 1373.0 9273.0 70.0 8533.0 9005.0 144.0 131.0 1718.0 3247.0 2884.0 3003.0 0 g 2476.0 2549.0 1802.0 1492.0 103.0 110.0 672.0 317.0 132.0 9295.0 1581.0 2687.0 1958.0 2281.0 0 t 2289.0 2210.0 1364.0 782.0 137.0 86.0 363.0 96.0 9313.0 124.0 5784.0 2179.0 2537.0 2286.0 0
MA1485.1_rc_shift0 (FERD3L_rc)				; dyads_m8 versus MA1485.1_rc (FERD3L_rc); m=5/26; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.674627; GTrACAGCTGkyrC- ; cor=; Ncor= a 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0
MA0499.2_shift1 (MYOD1)				; dyads_m8 versus MA0499.2 (MYOD1); m=6/26; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.672865; -cwgCACCTGTymy- ; cor=; Ncor= a 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0500.2_shift1 (MYOG)				; dyads_m8 versus MA0500.2 (MYOG); m=7/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.658251; -sarCAGCTGyts-- ; cor=; Ncor= a 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 c 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 g 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 t 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0
MA1618.1_shift1 (Ptf1a)				; dyads_m8 versus MA1618.1 (Ptf1a); m=8/26; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.644188; -dmaCAGATGttkh- ; cor=; Ncor= a 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0
MA0521.1_rc_shift1 (Tcf12_rc)				; dyads_m8 versus MA0521.1_rc (Tcf12_rc); m=9/26; ncol2=11; w=11; offset=1; strand=R; shift=1; score=0.64128; -cwsCAGCTGYy--- ; cor=; Ncor= a 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1620.1_rc_shift1 (Ptf1a(var.3)_rc)				; dyads_m8 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=10/26; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.619772; -rmaCAGGTGtky-- ; cor=; Ncor= a 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 0 c 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 0 g 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 0 t 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0 0
MA0745.2_shift1 (SNAI2)				; dyads_m8 versus MA0745.2 (SNAI2); m=11/26; ncol2=13; w=13; offset=1; strand=D; shift=1; score=0.608573; -aygCACCTGTmry- ; cor=; Ncor= a 0 14658.0 7668.0 10322.0 408.0 44963.0 112.0 246.0 78.0 179.0 814.0 12017.0 13586.0 6215.0 0 c 0 10031.0 12314.0 6393.0 44463.0 202.0 45144.0 44739.0 313.0 254.0 6467.0 18771.0 11016.0 13476.0 0 g 0 11169.0 9490.0 26742.0 323.0 424.0 326.0 487.0 196.0 45257.0 1263.0 6281.0 12297.0 8219.0 0 t 0 9958.0 16344.0 2359.0 622.0 227.0 234.0 344.0 45229.0 126.0 37272.0 8747.0 8917.0 17906.0 0
MA1571.1_shift1 (TGIF2LX)				; dyads_m8 versus MA1571.1 (TGIF2LX); m=12/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.596338; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0
MA1467.1_shift2 (ATOH1(var.2))				; dyads_m8 versus MA1467.1 (ATOH1(var.2)); m=13/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.596304; --AACAGCTGTY--- ; cor=; Ncor= a 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 0 c 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 0 g 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 0 t 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0 0
MA0796.1_shift1 (TGIF1)				; dyads_m8 versus MA0796.1 (TGIF1); m=14/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.592017; -TGACAGCTGTCA-- ; cor=; Ncor= a 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0
MA1572.1_shift1 (TGIF2LY)				; dyads_m8 versus MA1572.1 (TGIF2LY); m=15/26; ncol2=12; w=12; offset=1; strand=D; shift=1; score=0.583373; -TGACAgcTGTCA-- ; cor=; Ncor= a 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA0797.1_rc_shift1 (TGIF2_rc)				; dyads_m8 versus MA0797.1_rc (TGIF2_rc); m=16/26; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.577005; -TGACAsCTGTCA-- ; cor=; Ncor= a 0 420.0 113.0 11801.0 83.0 11801.0 91.0 2690.0 41.0 156.0 155.0 52.0 11801.0 0 0 c 0 395.0 136.0 123.0 11801.0 57.0 4341.0 11801.0 270.0 51.0 396.0 11801.0 153.0 0 0 g 0 172.0 11801.0 621.0 77.0 410.0 7459.0 262.0 25.0 11801.0 34.0 48.0 421.0 0 0 t 0 11801.0 70.0 601.0 150.0 71.0 1501.0 324.0 11801.0 127.0 11801.0 97.0 477.0 0 0
MA1472.1_shift2 (BHLHA15(var.2))				; dyads_m8 versus MA1472.1 (BHLHA15(var.2)); m=17/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.566664; --avCAGCTGyy--- ; cor=; Ncor= a 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA1635.1_rc_shift2 (BHLHE22(var.2)_rc)				; dyads_m8 versus MA1635.1_rc (BHLHE22(var.2)_rc); m=18/26; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.556921; --csCAGCTGsg--- ; cor=; Ncor= a 0 0 3886.0 4449.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4402.0 0 0 0 c 0 0 5625.0 5112.0 18327.0 37.0 53.0 18288.0 52.0 11.0 7267.0 4447.0 0 0 0 g 0 0 4447.0 7269.0 15.0 52.0 18288.0 53.0 37.0 18331.0 5110.0 5621.0 0 0 0 t 0 0 4398.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4453.0 3886.0 0 0 0
MA0665.1_rc_shift2 (MSC_rc)				; dyads_m8 versus MA0665.1_rc (MSC_rc); m=19/26; ncol2=10; w=10; offset=2; strand=R; shift=2; score=0.544896; --AACAGCTGTT--- ; cor=; Ncor= a 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA0691.1_shift2 (TFAP4)				; dyads_m8 versus MA0691.1 (TFAP4); m=20/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.544646; --AwCAGCTGwT--- ; cor=; Ncor= a 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0667.1_shift2 (MYF6)				; dyads_m8 versus MA0667.1 (MYF6); m=21/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.525397; --AACArCTGTY--- ; cor=; Ncor= a 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA1100.2_shift2 (ASCL1)				; dyads_m8 versus MA1100.2 (ASCL1); m=22/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.524735; --rrCAGCTGcy--- ; cor=; Ncor= a 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 0 c 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 0 g 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 0 t 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0 0
MA0816.1_shift2 (Ascl2)				; dyads_m8 versus MA0816.1 (Ascl2); m=23/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.520574; --arCAGCTGyy--- ; cor=; Ncor= a 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA0048.2_shift2 (NHLH1)				; dyads_m8 versus MA0048.2 (NHLH1); m=24/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.51595; --cGCAGCTGCk--- ; cor=; Ncor= a 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0
MA0820.1_shift2 (FIGLA)				; dyads_m8 versus MA0820.1 (FIGLA); m=25/26; ncol2=10; w=10; offset=2; strand=D; shift=2; score=0.477025; --wmCACCTGkw--- ; cor=; Ncor= a 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0774.1_rc_shift6 (MEIS2_rc)				; dyads_m8 versus MA0774.1_rc (MEIS2_rc); m=26/26; ncol2=8; w=8; offset=6; strand=R; shift=6; score=0.416501; ------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m25_shift3 (oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25)				; oligos_8nt_mkv2_m25 (oligos_8nt_mkv2_m25oligos_8nt_mkv2_m25); m=0 (reference); ncol1=12; shift=3; ncol=17; ---gvAACAGTTGcr-- ; Alignment reference a 0 0 0 1 2 6 6 0 6 0 0 0 0 0 3 0 0 c 0 0 0 1 2 0 0 6 0 0 1 0 0 4 0 0 0 g 0 0 0 3 2 0 0 0 0 6 0 0 6 1 2 0 0 t 0 0 0 1 0 0 0 0 0 0 5 6 0 1 1 0 0
MA0499.2_rc_shift3 (MYOD1_rc)				; oligos_8nt_mkv2_m25 versus MA0499.2_rc (MYOD1_rc); m=1/26; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.725981; ---rkrACAGGTGcwg- ; cor=; Ncor= a 0 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 c 0 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 g 0 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 t 0 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0
MA0100.3_rc_shift5 (MYB_rc)				; oligos_8nt_mkv2_m25 versus MA0100.3_rc (MYB_rc); m=2/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.693636; -----kdCAGTTGvk-- ; cor=; Ncor= a 0 0 0 0 0 352.0 497.0 0.0 1398.0 0.0 6.0 7.0 9.0 410.0 380.0 0 0 c 0 0 0 0 0 225.0 147.0 1516.0 68.0 0.0 0.0 39.0 5.0 397.0 300.0 0 0 g 0 0 0 0 0 528.0 482.0 3.0 60.0 1527.0 2.0 3.0 1513.0 428.0 422.0 0 0 t 0 0 0 0 0 422.0 401.0 8.0 1.0 0.0 1519.0 1478.0 0.0 292.0 425.0 0 0
MA0745.2_rc_shift3 (SNAI2_rc)				; oligos_8nt_mkv2_m25 versus MA0745.2_rc (SNAI2_rc); m=3/26; ncol2=13; w=12; offset=0; strand=R; shift=3; score=0.685787; ---rykACAGGTGcrt- ; cor=; Ncor= a 0 0 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 c 0 0 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 g 0 0 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 t 0 0 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0
MA0667.1_rc_shift5 (MYF6_rc)				; oligos_8nt_mkv2_m25 versus MA0667.1_rc (MYF6_rc); m=4/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.664605; -----RACAGyTGTT-- ; cor=; Ncor= a 0 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 c 0 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 g 0 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 t 0 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0
MA1559.1_shift5 (SNAI3)				; oligos_8nt_mkv2_m25 versus MA1559.1 (SNAI3); m=5/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.652324; -----arCAGGTGya-- ; cor=; Ncor= a 0 0 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 c 0 0 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 g 0 0 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 t 0 0 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0
MA0832.1_shift3 (Tcf21)				; oligos_8nt_mkv2_m25 versus MA0832.1 (Tcf21); m=6/26; ncol2=14; w=12; offset=0; strand=D; shift=3; score=0.637399; ---ryAACAGCTGTTry ; cor=; Ncor= a 0 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 c 0 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 g 0 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 t 0 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0
MA0665.1_rc_shift5 (MSC_rc)				; oligos_8nt_mkv2_m25 versus MA0665.1_rc (MSC_rc); m=7/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.636844; -----AACAGCTGTT-- ; cor=; Ncor= a 0 0 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 c 0 0 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 g 0 0 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 t 0 0 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0
MA0816.1_shift5 (Ascl2)				; oligos_8nt_mkv2_m25 versus MA0816.1 (Ascl2); m=8/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.633827; -----arCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 c 0 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 g 0 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 t 0 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0
MA0521.1_shift5 (Tcf12)				; oligos_8nt_mkv2_m25 versus MA0521.1 (Tcf12); m=9/26; ncol2=11; w=10; offset=2; strand=D; shift=5; score=0.632493; -----rRCAGCTGswg- ; cor=; Ncor= a 0 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 c 0 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 g 0 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 t 0 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0
MA1472.1_shift5 (BHLHA15(var.2))				; oligos_8nt_mkv2_m25 versus MA1472.1 (BHLHA15(var.2)); m=10/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.63047; -----avCAGCTGyy-- ; cor=; Ncor= a 0 0 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 c 0 0 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 g 0 0 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 t 0 0 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0
MA1619.1_shift4 (Ptf1a(var.2))				; oligos_8nt_mkv2_m25 versus MA1619.1 (Ptf1a(var.2)); m=11/26; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.625798; ----rmaCAGCTGtky- ; cor=; Ncor= a 0 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 c 0 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 g 0 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 t 0 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0
MA1641.1_shift4 (MYF5)				; oligos_8nt_mkv2_m25 versus MA1641.1 (MYF5); m=12/26; ncol2=12; w=11; offset=1; strand=D; shift=4; score=0.62486; ----gvaCAGCTGtbc- ; cor=; Ncor= a 0 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 c 0 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 g 0 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 t 0 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0
MA1467.1_shift5 (ATOH1(var.2))				; oligos_8nt_mkv2_m25 versus MA1467.1 (ATOH1(var.2)); m=13/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.62401; -----AACAGCTGTY-- ; cor=; Ncor= a 0 0 0 0 0 1368.0 1008.0 0.0 1368.0 0.0 204.0 0.0 0.0 93.0 0.0 0 0 c 0 0 0 0 0 171.0 179.0 1368.0 0.0 0.0 1368.0 0.0 0.0 296.0 943.0 0 0 g 0 0 0 0 0 466.0 182.0 0.0 0.0 1368.0 0.0 0.0 1368.0 35.0 0.0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 76.0 181.0 0.0 1368.0 0.0 944.0 426.0 0 0
MA0500.2_rc_shift4 (MYOG_rc)				; oligos_8nt_mkv2_m25 versus MA0500.2_rc (MYOG_rc); m=14/26; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.622044; ----sarCAGCTGyts- ; cor=; Ncor= a 0 0 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 c 0 0 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 g 0 0 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 t 0 0 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0
MA0691.1_shift5 (TFAP4)				; oligos_8nt_mkv2_m25 versus MA0691.1 (TFAP4); m=15/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.614969; -----AwCAGCTGwT-- ; cor=; Ncor= a 0 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 c 0 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 g 0 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 t 0 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0
MA0820.1_rc_shift5 (FIGLA_rc)				; oligos_8nt_mkv2_m25 versus MA0820.1_rc (FIGLA_rc); m=16/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.609287; -----wmCAGGTGkw-- ; cor=; Ncor= a 0 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 c 0 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 g 0 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 t 0 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0
MA1620.1_rc_shift4 (Ptf1a(var.3)_rc)				; oligos_8nt_mkv2_m25 versus MA1620.1_rc (Ptf1a(var.3)_rc); m=17/26; ncol2=12; w=11; offset=1; strand=R; shift=4; score=0.608145; ----rmaCAGGTGtky- ; cor=; Ncor= a 0 0 0 0 2811.0 2745.0 6633.0 142.0 10014.0 129.0 426.0 114.0 107.0 826.0 1599.0 2324.0 0 c 0 0 0 0 2183.0 3341.0 1516.0 9972.0 98.0 294.0 1182.0 84.0 113.0 1410.0 2379.0 2664.0 0 g 0 0 0 0 3004.0 2527.0 1615.0 109.0 94.0 9612.0 8567.0 60.0 9887.0 1188.0 3700.0 2469.0 0 t 0 0 0 0 2293.0 1678.0 527.0 68.0 85.0 256.0 116.0 10033.0 184.0 6867.0 2613.0 2834.0 0
MA1542.1_rc_shift5 (OSR1_rc)				; oligos_8nt_mkv2_m25 versus MA1542.1_rc (OSR1_rc); m=18/26; ncol2=10; w=10; offset=2; strand=R; shift=5; score=0.597038; -----mACrGTAGCr-- ; cor=; Ncor= a 0 0 0 0 0 1731.0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 1843.0 0 0 c 0 0 0 0 0 1512.0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 717.0 0 0 g 0 0 0 0 0 545.0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 1302.0 0 0 t 0 0 0 0 0 1102.0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0 1028.0 0 0
MA1100.2_shift5 (ASCL1)				; oligos_8nt_mkv2_m25 versus MA1100.2 (ASCL1); m=19/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.592986; -----rrCAGCTGcy-- ; cor=; Ncor= a 0 0 0 0 0 1267.0 1334.0 0.0 4413.0 107.0 729.0 118.0 52.0 177.0 843.0 0 0 c 0 0 0 0 0 926.0 521.0 4413.0 157.0 1288.0 4413.0 24.0 0.0 3065.0 1487.0 0 0 g 0 0 0 0 0 1495.0 3079.0 0.0 60.0 4413.0 1320.0 121.0 4413.0 814.0 889.0 0 0 t 0 0 0 0 0 726.0 354.0 14.0 218.0 625.0 20.0 4413.0 29.0 1349.0 1194.0 0 0
MA1635.1_shift5 (BHLHE22(var.2))				; oligos_8nt_mkv2_m25 versus MA1635.1 (BHLHE22(var.2)); m=20/26; ncol2=10; w=10; offset=2; strand=D; shift=5; score=0.585375; -----csCAGCTGsg-- ; cor=; Ncor= a 0 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 c 0 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 g 0 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 t 0 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0
MA0744.2_shift0 (SCRT2)				; oligos_8nt_mkv2_m25 versus MA0744.2 (SCRT2); m=21/26; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.561875; rrwkCAACAGGTggtw- ; cor=; Ncor= a 18855.0 23310.0 29945.0 5353.0 1378.0 53425.0 62366.0 231.0 63880.0 7306.0 1862.0 2078.0 10481.0 13383.0 16058.0 17881.0 0 c 13345.0 12732.0 6319.0 7236.0 59161.0 5536.0 413.0 64856.0 294.0 728.0 972.0 3475.0 5661.0 11351.0 16085.0 13846.0 0 g 17680.0 17497.0 12473.0 35769.0 1339.0 2265.0 1878.0 319.0 252.0 56105.0 60636.0 1168.0 38133.0 25288.0 14716.0 12430.0 0 t 15730.0 12071.0 16873.0 17252.0 3732.0 4384.0 953.0 204.0 1184.0 1471.0 2140.0 58889.0 11335.0 15588.0 18751.0 21453.0 0
MA1618.1_shift4 (Ptf1a)				; oligos_8nt_mkv2_m25 versus MA1618.1 (Ptf1a); m=22/26; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.554526; ----dmaCAGATGttkh ; cor=; Ncor= a 0 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 c 0 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 g 0 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 t 0 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0
MA0743.2_shift0 (SCRT1)				; oligos_8nt_mkv2_m25 versus MA0743.2 (SCRT1); m=23/26; ncol2=16; w=12; offset=-3; strand=D; shift=0; score=0.550565; wawkCAACAGGTGgtw- ; cor=; Ncor= a 16320.0 22932.0 17036.0 4413.0 1456.0 45606.0 57271.0 213.0 58758.0 7017.0 1664.0 883.0 7813.0 10722.0 13382.0 16484.0 0 c 14118.0 10314.0 8693.0 7425.0 54835.0 8751.0 370.0 59557.0 234.0 557.0 466.0 1098.0 3296.0 8788.0 14903.0 12837.0 0 g 14307.0 14514.0 10154.0 16396.0 1297.0 1835.0 1566.0 224.0 159.0 51330.0 56500.0 259.0 41190.0 26973.0 13470.0 11049.0 0 t 15464.0 12449.0 24326.0 31975.0 2621.0 4017.0 1002.0 215.0 1058.0 1305.0 1579.0 57969.0 7910.0 13726.0 18454.0 19839.0 0
MA1647.1_rc_shift1 (PRDM4_rc)				; oligos_8nt_mkv2_m25 versus MA1647.1_rc (PRDM4_rc); m=24/26; ncol2=11; w=9; offset=-2; strand=R; shift=1; score=0.503192; -twGAAACAGhy----- ; cor=; Ncor= a 0 1799.0 2962.0 292.0 6811.0 6288.0 6889.0 39.0 5543.0 154.0 2123.0 1559.0 0 0 0 0 0 c 0 1344.0 726.0 129.0 111.0 393.0 82.0 6813.0 566.0 316.0 2079.0 2553.0 0 0 0 0 0 g 0 1532.0 1456.0 6353.0 138.0 405.0 137.0 110.0 286.0 6504.0 1012.0 1163.0 0 0 0 0 0 t 0 2580.0 2111.0 481.0 195.0 169.0 147.0 293.0 860.0 281.0 2041.0 1980.0 0 0 0 0 0
MA0869.1_shift5 (Sox11)				; oligos_8nt_mkv2_m25 versus MA0869.1 (Sox11); m=25/26; ncol2=15; w=10; offset=2; strand=D; shift=5; score=0.441022; -----AACAATTkCAGT ; cor=; Ncor= a 0 0 0 0 0 305.0 305.0 0.0 305.0 305.0 0.0 0.0 41.0 0.0 305.0 0.0 0.0 c 0 0 0 0 0 0.0 0.0 305.0 0.0 0.0 0.0 1.0 39.0 305.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 305.0 0.0 0.0 305.0 2.0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 305.0 305.0 425.0 1.0 0.0 99.0 305.0
MA0087.1_rc_shift4 (Sox5_rc)				; oligos_8nt_mkv2_m25 versus MA0087.1_rc (Sox5_rc); m=26/26; ncol2=7; w=7; offset=1; strand=R; shift=4; score=0.432693; ----wAACAAT------ ; cor=; Ncor= a 0 0 0 0 8.0 21.0 22.0 0.0 23.0 22.0 0.0 0 0 0 0 0 0 c 0 0 0 0 4.0 0.0 0.0 22.0 0.0 1.0 0.0 0 0 0 0 0 0 g 0 0 0 0 3.0 1.0 1.0 0.0 0.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 8.0 1.0 0.0 1.0 0.0 0.0 23.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m38_shift3 (dyads_m38dyads_m38)				; dyads_m38 (dyads_m38dyads_m38); m=0 (reference); ncol1=12; shift=3; ncol=17; ---twTTAAATAAww-- ; Alignment reference a 0 0 0 6 9 3 0 27 27 22 3 26 27 12 8 0 0 c 0 0 0 7 5 1 0 0 1 1 0 0 0 3 6 0 0 g 0 0 0 5 3 2 1 0 1 2 0 1 1 5 6 0 0 t 0 0 0 11 12 23 28 2 0 4 26 2 1 9 9 0 0
MA0639.1_shift3 (DBP)				; dyads_m38 versus MA0639.1 (DBP); m=1/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.714164; ---krTTAYRTAAya-- ; cor=; Ncor= a 0 0 0 1552.0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 2574.0 0 0 c 0 0 0 1714.0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 1657.0 0 0 g 0 0 0 1903.0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 1747.0 0 0 t 0 0 0 1930.0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0 1122.0 0 0
MA0843.1_shift3 (TEF)				; dyads_m38 versus MA0843.1 (TEF); m=2/23; ncol2=12; w=12; offset=0; strand=D; shift=3; score=0.707679; ---yrTTACrTAAym-- ; cor=; Ncor= a 0 0 0 541.0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 1383.0 0 0 c 0 0 0 1053.0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 1141.0 0 0 g 0 0 0 853.0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 554.0 0 0 t 0 0 0 1154.0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0 522.0 0 0
MA0621.1_rc_shift4 (mix-a_rc)				; dyads_m38 versus MA0621.1_rc (mix-a_rc); m=3/23; ncol2=11; w=11; offset=1; strand=R; shift=4; score=0.70679; ----mcTAATTAayt-- ; cor=; Ncor= a 0 0 0 0 301.0 184.0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 244.0 229.0 0 0 c 0 0 0 0 290.0 488.0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 261.0 229.0 0 0 g 0 0 0 0 205.0 100.0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 150.0 229.0 0 0 t 0 0 0 0 205.0 228.0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 345.0 312.0 0 0
MA0135.1_shift2 (Lhx3)				; dyads_m38 versus MA0135.1 (Lhx3); m=4/23; ncol2=13; w=12; offset=-1; strand=D; shift=2; score=0.678274; --wAATTAATTAwyy-- ; cor=; Ncor= a 0 0 9.0 16.0 19.0 0.0 0.0 19.0 20.0 2.0 0.0 16.0 9.0 2.0 2.0 0 0 c 0 0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 8.0 9.0 0 0 g 0 0 3.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 3.0 0 0 t 0 0 8.0 0.0 1.0 20.0 20.0 1.0 0.0 16.0 19.0 3.0 8.0 10.0 6.0 0 0
MA0025.2_rc_shift2 (NFIL3_rc)				; dyads_m38 versus MA0025.2_rc (NFIL3_rc); m=5/23; ncol2=13; w=12; offset=-1; strand=R; shift=2; score=0.666504; --wtaTTrCATAAyw-- ; cor=; Ncor= a 0 0 6893.0 5543.0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 2798.0 7109.0 0 0 c 0 0 4482.0 4152.0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 7261.0 5615.0 0 0 g 0 0 4929.0 5630.0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 3896.0 3904.0 0 0 t 0 0 6692.0 7671.0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 9041.0 6368.0 0 0
MA0703.2_rc_shift5 (LMX1B_rc)				; dyads_m38 versus MA0703.2_rc (LMX1B_rc); m=6/23; ncol2=11; w=10; offset=2; strand=R; shift=5; score=0.649413; -----tTAATTAAawt- ; cor=; Ncor= a 0 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 2955.0 2058.0 663.0 0 c 0 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 936.0 756.0 890.0 0 g 0 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 548.0 680.0 617.0 0 t 0 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 1109.0 2005.0 1894.0 0
MA1463.1_shift4 (ARGFX)				; dyads_m38 versus MA1463.1 (ARGFX); m=7/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.609615; ----kcTAATTAra--- ; cor=; Ncor= a 0 0 0 0 3893.0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 6983.0 0 0 0 c 0 0 0 0 1750.0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 4098.0 0 0 0 g 0 0 0 0 4467.0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 2351.0 0 0 0 t 0 0 0 0 6479.0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 3158.0 0 0 0
MA0628.1_shift4 (POU6F1)				; dyads_m38 versus MA0628.1 (POU6F1); m=8/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.608898; ----ayTAATTArt--- ; cor=; Ncor= a 0 0 0 0 507.0 151.0 32.0 905.0 938.0 14.0 18.0 950.0 353.0 89.0 0 0 0 c 0 0 0 0 193.0 351.0 10.0 70.0 34.0 14.0 8.0 8.0 145.0 211.0 0 0 0 g 0 0 0 0 211.0 145.0 8.0 8.0 14.0 34.0 70.0 10.0 351.0 193.0 0 0 0 t 0 0 0 0 89.0 353.0 950.0 18.0 14.0 938.0 905.0 32.0 151.0 507.0 0 0 0
MA1487.1_shift3 (FOXE1)				; dyads_m38 versus MA1487.1 (FOXE1); m=9/23; ncol2=15; w=12; offset=0; strand=D; shift=3; score=0.590756; ---cvyTAARyAAACAa ; cor=; Ncor= a 0 0 0 54.0 288.0 37.0 191.0 664.0 664.0 664.0 0.0 664.0 664.0 664.0 0.0 664.0 521.0 c 0 0 0 289.0 381.0 298.0 0.0 15.0 57.0 0.0 324.0 10.0 8.0 0.0 664.0 0.0 84.0 g 0 0 0 165.0 283.0 38.0 0.0 30.0 58.0 228.0 0.0 0.0 0.0 0.0 0.0 3.0 123.0 t 0 0 0 155.0 0.0 366.0 664.0 0.0 194.0 0.0 340.0 0.0 0.0 0.0 0.0 0.0 142.0
MA0707.1_shift4 (MNX1)				; dyads_m38 versus MA0707.1 (MNX1); m=10/23; ncol2=10; w=10; offset=1; strand=D; shift=4; score=0.589425; ----dsyAATTAaa--- ; cor=; Ncor= a 0 0 0 0 213.0 127.0 1.0 610.0 610.0 8.0 140.0 610.0 319.0 264.0 0 0 0 c 0 0 0 0 25.0 167.0 217.0 121.0 36.0 43.0 21.0 0.0 54.0 123.0 0 0 0 g 0 0 0 0 214.0 191.0 7.0 0.0 0.0 0.0 65.0 0.0 112.0 109.0 0 0 0 t 0 0 0 0 158.0 125.0 393.0 56.0 0.0 610.0 610.0 0.0 124.0 115.0 0 0 0
MA0601.1_shift2 (Arid3b)				; dyads_m38 versus MA0601.1 (Arid3b); m=11/23; ncol2=11; w=10; offset=-1; strand=D; shift=2; score=0.568551; --awaTTAATwaa---- ; cor=; Ncor= a 0 0 468.0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 262.0 490.0 351.0 0 0 0 0 c 0 0 177.0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 168.0 170.0 216.0 0 0 0 0 g 0 0 177.0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 73.0 170.0 216.0 0 0 0 0 t 0 0 177.0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0 498.0 170.0 216.0 0 0 0 0
MA0853.1_shift1 (Alx4)				; dyads_m38 versus MA0853.1 (Alx4); m=12/23; ncol2=17; w=12; offset=-2; strand=D; shift=1; score=0.55955; -cgcryTAATTArthas ; cor=; Ncor= a 0 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 17.0 29.0 36.0 23.0 c 0 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 23.0 28.0 23.0 29.0 g 0 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 18.0 13.0 19.0 25.0 t 0 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 42.0 30.0 22.0 23.0
MA0619.1_shift3 (LIN54)				; dyads_m38 versus MA0619.1 (LIN54); m=13/23; ncol2=9; w=9; offset=0; strand=D; shift=3; score=0.558337; ---wTTTrAATt----- ; cor=; Ncor= a 0 0 0 411.0 0.0 0.0 0.0 438.0 999.0 999.0 104.0 243.0 0 0 0 0 0 c 0 0 0 91.0 0.0 0.0 212.0 0.0 0.0 0.0 211.0 249.0 0 0 0 0 0 g 0 0 0 212.0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 159.0 0 0 0 0 0 t 0 0 0 285.0 999.0 999.0 788.0 0.0 0.0 0.0 685.0 350.0 0 0 0 0 0
MA0847.2_shift4 (FOXD2)				; dyads_m38 versus MA0847.2 (FOXD2); m=14/23; ncol2=13; w=11; offset=1; strand=D; shift=4; score=0.551184; ----sywAwRTAAAYAw ; cor=; Ncor= a 0 0 0 0 1404.0 865.0 2183.0 5995.0 2482.0 2608.0 148.0 5995.0 5995.0 5995.0 0.0 5995.0 2400.0 c 0 0 0 0 1834.0 2406.0 36.0 92.0 1208.0 101.0 1005.0 658.0 209.0 0.0 5995.0 53.0 1003.0 g 0 0 0 0 2314.0 309.0 3.0 1294.0 752.0 5995.0 0.0 11.0 17.0 25.0 0.0 125.0 515.0 t 0 0 0 0 442.0 3589.0 3812.0 23.0 1553.0 6.0 5995.0 11.0 11.0 33.0 2297.0 209.0 2076.0
MA0854.1_rc_shift0 (Alx1_rc)				; dyads_m38 versus MA0854.1_rc (Alx1_rc); m=15/23; ncol2=17; w=12; offset=-3; strand=R; shift=0; score=0.540145; rgkrayTAATTArykcg ; cor=; Ncor= a 31.0 24.0 17.0 29.0 53.0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 17.0 15.0 7.0 20.0 c 14.0 23.0 12.0 16.0 11.0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 31.0 14.0 65.0 17.0 g 40.0 29.0 31.0 32.0 21.0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 9.0 33.0 21.0 44.0 t 15.0 24.0 39.0 23.0 15.0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 43.0 38.0 7.0 19.0
MA0702.2_rc_shift5 (LMX1A_rc)				; dyads_m38 versus MA0702.2_rc (LMX1A_rc); m=16/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.536035; -----kTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 827.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 1158.0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 2558.0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 2812.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0
MA0874.1_shift0 (Arx)				; dyads_m38 versus MA0874.1 (Arx); m=17/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.529196; gtscryTAATTArtksw ; cor=; Ncor= a 24.0 13.0 16.0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 16.0 18.0 9.0 53.0 c 22.0 16.0 37.0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 16.0 11.0 36.0 10.0 g 40.0 19.0 29.0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 14.0 44.0 37.0 7.0 t 14.0 52.0 19.0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 54.0 27.0 18.0 30.0
MA0704.1_rc_shift5 (Lhx4_rc)				; dyads_m38 versus MA0704.1_rc (Lhx4_rc); m=18/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.505489; -----yTAATTAr---- ; cor=; Ncor= a 0 0 0 0 0 275.0 135.0 2896.0 2896.0 155.0 255.0 2896.0 1161.0 0 0 0 0 c 0 0 0 0 0 857.0 316.0 57.0 0.0 0.0 309.0 0.0 495.0 0 0 0 0 g 0 0 0 0 0 449.0 39.0 446.0 0.0 0.0 428.0 912.0 817.0 0 0 0 0 t 0 0 0 0 0 1314.0 2896.0 0.0 0.0 2896.0 2896.0 217.0 422.0 0 0 0 0
MA0851.1_shift0 (Foxj3)				; dyads_m38 versus MA0851.1 (Foxj3); m=19/23; ncol2=17; w=12; offset=-3; strand=D; shift=0; score=0.50405; hraarRTAAACAAwsmc ; cor=; Ncor= a 27.0 34.0 48.0 51.0 35.0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 22.0 27.0 24.0 c 26.0 13.0 19.0 13.0 13.0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 34.0 27.0 39.0 g 21.0 31.0 16.0 17.0 33.0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 26.0 24.0 17.0 t 26.0 22.0 17.0 19.0 20.0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 18.0 22.0 19.0
MA0674.1_rc_shift5 (NKX6-1_rc)				; dyads_m38 versus MA0674.1_rc (NKX6-1_rc); m=20/23; ncol2=8; w=8; offset=2; strand=R; shift=5; score=0.479272; -----tTAATkRs---- ; cor=; Ncor= a 0 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 381.0 0 0 0 0 c 0 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 734.0 0 0 0 0 g 0 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 695.0 0 0 0 0 t 0 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 403.0 0 0 0 0
MA0715.1_rc_shift6 (PROP1_rc)				; dyads_m38 versus MA0715.1_rc (PROP1_rc); m=21/23; ncol2=11; w=9; offset=3; strand=R; shift=6; score=0.451684; ------TAATTwrATTA ; cor=; Ncor= a 0 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 0.0 11.0 575.0 c 0 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 2.0 0.0 10.0 g 0 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 0.0 0.0 12.0 t 0 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0 575.0 575.0 63.0
MA0151.1_shift4 (Arid3a)				; dyads_m38 versus MA0151.1 (Arid3a); m=22/23; ncol2=6; w=6; offset=1; strand=D; shift=4; score=0.425255; ----ATyAAA------- ; cor=; Ncor= a 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 0 0 0 0 g 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 0 0 0 0 t 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0 0 0 0 0
MA0033.2_shift5 (FOXL1)				; dyads_m38 versus MA0033.2 (FOXL1); m=23/23; ncol2=7; w=7; offset=2; strand=D; shift=5; score=0.423816; -----rTAAACA----- ; cor=; Ncor= a 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 c 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 g 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m25_shift1 (dyads_m25dyads_m25)				; dyads_m25 (dyads_m25dyads_m25); m=0 (reference); ncol1=17; shift=1; ncol=18; -dkAACAGCTGCTGyCyt ; Alignment reference a 0 4 2 12 13 0 15 0 0 3 0 1 1 0 2 0 3 3 c 0 2 3 1 0 15 0 1 15 0 0 12 0 1 4 12 4 3 g 0 4 6 2 2 0 0 13 0 0 15 0 0 13 1 1 0 3 t 0 5 4 0 0 0 0 1 0 12 0 2 14 1 8 2 8 6
MA0832.1_shift1 (Tcf21)				; dyads_m25 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=1; score=0.71051; -ryAACAGCTGTTry--- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; dyads_m25 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=1; score=0.616578; -GTrACAGCTGkyrC--- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0 0
MA0500.2_rc_shift2 (MYOG_rc)				; dyads_m25 versus MA0500.2_rc (MYOG_rc); m=3/20; ncol2=12; w=12; offset=1; strand=R; shift=2; score=0.597222; --sarCAGCTGyts---- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0 0 0
MA0499.2_rc_shift1 (MYOD1_rc)				; dyads_m25 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.580397; -rkrACAGGTGcwg---- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0 0
MA1641.1_shift2 (MYF5)				; dyads_m25 versus MA1641.1 (MYF5); m=5/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.569539; --gvaCAGCTGtbc---- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0 0
MA0521.1_shift3 (Tcf12)				; dyads_m25 versus MA0521.1 (Tcf12); m=6/20; ncol2=11; w=11; offset=2; strand=D; shift=3; score=0.56528; ---rRCAGCTGswg---- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; dyads_m25 versus MA1619.1 (Ptf1a(var.2)); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=2; score=0.563369; --rmaCAGCTGtky---- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0 0
MA0816.1_shift3 (Ascl2)				; dyads_m25 versus MA0816.1 (Ascl2); m=8/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.548385; ---arCAGCTGyy----- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0 0
MA1618.1_rc_shift1 (Ptf1a_rc)				; dyads_m25 versus MA1618.1_rc (Ptf1a_rc); m=9/20; ncol2=13; w=13; offset=0; strand=R; shift=1; score=0.545304; -dmaaCATCTGtkh---- ; cor=; Ncor= a 0 3622.0 3685.0 8294.0 8564.0 210.0 13973.0 148.0 653.0 106.0 172.0 726.0 2735.0 3699.0 0 0 0 0 c 0 3376.0 3664.0 2295.0 2854.0 13868.0 118.0 437.0 13072.0 153.0 130.0 2414.0 3568.0 3661.0 0 0 0 0 g 0 3689.0 3601.0 2341.0 2058.0 122.0 224.0 1724.0 466.0 118.0 14006.0 2747.0 3662.0 2989.0 0 0 0 0 t 0 3754.0 3491.0 1511.0 965.0 241.0 126.0 12132.0 250.0 14064.0 133.0 8554.0 4476.0 4092.0 0 0 0 0
MA0091.1_shift1 (TAL1::TCF3)				; dyads_m25 versus MA0091.1 (TAL1::TCF3); m=10/20; ncol2=12; w=12; offset=0; strand=D; shift=1; score=0.544554; -mgAmCAKMTGkT----- ; cor=; Ncor= a 0 13.0 9.0 39.0 20.0 0.0 44.0 0.0 12.0 0.0 0.0 0.0 4.0 0 0 0 0 0 c 0 14.0 10.0 0.0 24.0 43.0 0.0 1.0 32.0 0.0 0.0 3.0 4.0 0 0 0 0 0 g 0 8.0 20.0 3.0 0.0 1.0 0.0 11.0 0.0 0.0 43.0 20.0 2.0 0 0 0 0 0 t 0 9.0 5.0 2.0 0.0 0.0 0.0 32.0 0.0 44.0 1.0 21.0 34.0 0 0 0 0 0
MA0665.1_shift3 (MSC)				; dyads_m25 versus MA0665.1 (MSC); m=11/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.532233; ---AACAGCTGTT----- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0 0
MA0691.1_shift3 (TFAP4)				; dyads_m25 versus MA0691.1 (TFAP4); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.522601; ---AwCAGCTGwT----- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; dyads_m25 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=13/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.517149; ---rrCAGCTGbt----- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0 0
MA0667.1_rc_shift3 (MYF6_rc)				; dyads_m25 versus MA0667.1_rc (MYF6_rc); m=14/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502897; ---RACAGyTGTT----- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; dyads_m25 versus MA1467.1_rc (ATOH1(var.2)_rc); m=15/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.502638; ---RACAGCTGTT----- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; dyads_m25 versus MA1100.2_rc (ASCL1_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=3; score=0.487063; ---rgCAGCTGyy----- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; dyads_m25 versus MA1635.1 (BHLHE22(var.2)); m=17/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.475638; ---csCAGCTGsg----- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0 0
MA1655.1_shift0 (ZNF341)				; dyads_m25 versus MA1655.1 (ZNF341); m=18/20; ncol2=12; w=11; offset=-1; strand=D; shift=0; score=0.472656; grGAACAGCcas------ ; cor=; Ncor= a 4266.0 5117.0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 5305.0 3756.0 0 0 0 0 0 0 c 4256.0 2180.0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 4431.0 5745.0 0 0 0 0 0 0 g 5798.0 8832.0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 4672.0 5691.0 0 0 0 0 0 0 t 4408.0 2599.0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 4320.0 3536.0 0 0 0 0 0 0
MA0048.2_shift3 (NHLH1)				; dyads_m25 versus MA0048.2 (NHLH1); m=19/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.467729; ---cGCAGCTGCk----- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0 0
MA0820.1_shift3 (FIGLA)				; dyads_m25 versus MA0820.1 (FIGLA); m=20/20; ncol2=10; w=10; offset=2; strand=D; shift=3; score=0.441821; ---wmCACCTGkw----- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m8_shift2 (oligos_8nt_mkv2_m8oligos_8nt_mkv2_m8)				; oligos_8nt_mkv2_m8 (oligos_8nt_mkv2_m8oligos_8nt_mkv2_m8); m=0 (reference); ncol1=16; shift=2; ncol=18; --rgmACAGCTGCTGcws ; Alignment reference a 0 0 6 4 5 16 0 17 0 0 1 0 0 1 1 2 5 3 c 0 0 4 4 9 0 18 0 0 18 0 0 16 0 1 12 3 5 g 0 0 5 6 3 1 0 1 18 0 0 18 1 0 15 1 4 6 t 0 0 3 4 1 1 0 0 0 0 17 0 1 17 1 3 6 4
MA0832.1_shift2 (Tcf21)				; oligos_8nt_mkv2_m8 versus MA0832.1 (Tcf21); m=1/20; ncol2=14; w=14; offset=0; strand=D; shift=2; score=0.709616; --ryAACAGCTGTTry-- ; cor=; Ncor= a 0 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 0 c 0 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 0 g 0 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 0 t 0 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0 0
MA1485.1_rc_shift2 (FERD3L_rc)				; oligos_8nt_mkv2_m8 versus MA1485.1_rc (FERD3L_rc); m=2/20; ncol2=14; w=14; offset=0; strand=R; shift=2; score=0.688771; --GTrACAGCTGkyrC-- ; cor=; Ncor= a 0 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 0 c 0 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 0 g 0 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 0 t 0 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0 0
MA0500.2_shift3 (MYOG)				; oligos_8nt_mkv2_m8 versus MA0500.2 (MYOG); m=3/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.641993; ---sarCAGCTGyts--- ; cor=; Ncor= a 0 0 0 5310.0 8428.0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 1667.0 4667.0 5018.0 0 0 0 c 0 0 0 6381.0 3754.0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 10792.0 5497.0 5660.0 0 0 0 g 0 0 0 5596.0 5483.0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 2706.0 3718.0 6369.0 0 0 0 t 0 0 0 5070.0 4692.0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0 7192.0 8475.0 5310.0 0 0 0
MA0499.2_rc_shift2 (MYOD1_rc)				; oligos_8nt_mkv2_m8 versus MA0499.2_rc (MYOD1_rc); m=4/20; ncol2=13; w=13; offset=0; strand=R; shift=2; score=0.641684; --rkrACAGGTGcwg--- ; cor=; Ncor= a 0 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 0 c 0 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 0 g 0 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 0 t 0 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0 0
MA1529.1_rc_shift0 (NHLH2_rc)				; oligos_8nt_mkv2_m8 versus MA1529.1_rc (NHLH2_rc); m=5/20; ncol2=18; w=16; offset=-2; strand=R; shift=0; score=0.634286; gkGrCGCAGCTGCKrCcc ; cor=; Ncor= a 4228.0 3330.0 2533.0 13503.0 740.0 1230.0 0.0 21358.0 0.0 1054.0 1.0 5.0 2634.0 151.0 5394.0 2763.0 5198.0 4143.0 c 2264.0 1579.0 1183.0 1520.0 20977.0 275.0 21363.0 3.0 2266.0 20096.0 26.0 2.0 18930.0 671.0 4908.0 18450.0 13903.0 9732.0 g 11271.0 13462.0 18351.0 7207.0 204.0 20611.0 2.0 14.0 20268.0 2459.0 0.0 21359.0 2324.0 15451.0 6141.0 1065.0 2219.0 2655.0 t 3601.0 6392.0 3766.0 1184.0 210.0 693.0 0.0 0.0 525.0 6.0 21364.0 2.0 2378.0 5603.0 4921.0 3741.0 4312.0 4834.0
MA1619.1_shift3 (Ptf1a(var.2))				; oligos_8nt_mkv2_m8 versus MA1619.1 (Ptf1a(var.2)); m=6/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.619934; ---rmaCAGCTGtky--- ; cor=; Ncor= a 0 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 0 c 0 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 0 g 0 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 0 t 0 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0 0
MA1641.1_shift3 (MYF5)				; oligos_8nt_mkv2_m8 versus MA1641.1 (MYF5); m=7/20; ncol2=12; w=12; offset=1; strand=D; shift=3; score=0.618658; ---gvaCAGCTGtbc--- ; cor=; Ncor= a 0 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 0 c 0 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 0 g 0 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 0 t 0 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0 0
MA0521.1_shift4 (Tcf12)				; oligos_8nt_mkv2_m8 versus MA0521.1 (Tcf12); m=8/20; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.600137; ----rRCAGCTGswg--- ; cor=; Ncor= a 0 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 0 c 0 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 0 g 0 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 0 t 0 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0 0
MA1618.1_shift3 (Ptf1a)				; oligos_8nt_mkv2_m8 versus MA1618.1 (Ptf1a); m=9/20; ncol2=13; w=13; offset=1; strand=D; shift=3; score=0.573665; ---dmaCAGATGttkh-- ; cor=; Ncor= a 0 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 0 c 0 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 0 g 0 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 0 t 0 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0 0
MA0816.1_shift4 (Ascl2)				; oligos_8nt_mkv2_m8 versus MA0816.1 (Ascl2); m=10/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.561021; ----arCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 0 c 0 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 0 g 0 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 0 t 0 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0 0
MA1472.1_rc_shift4 (BHLHA15(var.2)_rc)				; oligos_8nt_mkv2_m8 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=11/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.545905; ----rrCAGCTGbt---- ; cor=; Ncor= a 0 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 0 c 0 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 0 g 0 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 0 t 0 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0 0
MA0665.1_shift4 (MSC)				; oligos_8nt_mkv2_m8 versus MA0665.1 (MSC); m=12/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.532889; ----AACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 0 c 0 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 0 g 0 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 0 t 0 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0 0
MA0691.1_shift4 (TFAP4)				; oligos_8nt_mkv2_m8 versus MA0691.1 (TFAP4); m=13/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.52861; ----AwCAGCTGwT---- ; cor=; Ncor= a 0 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 0 c 0 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 0 g 0 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 0 t 0 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0 0
MA0048.2_shift4 (NHLH1)				; oligos_8nt_mkv2_m8 versus MA0048.2 (NHLH1); m=14/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.528143; ----cGCAGCTGCk---- ; cor=; Ncor= a 0 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 0 c 0 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 0 g 0 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 0 t 0 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0 0
MA1635.1_shift4 (BHLHE22(var.2))				; oligos_8nt_mkv2_m8 versus MA1635.1 (BHLHE22(var.2)); m=15/20; ncol2=10; w=10; offset=2; strand=D; shift=4; score=0.527794; ----csCAGCTGsg---- ; cor=; Ncor= a 0 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 0 c 0 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 0 g 0 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 0 t 0 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0 0
MA1467.1_rc_shift4 (ATOH1(var.2)_rc)				; oligos_8nt_mkv2_m8 versus MA1467.1_rc (ATOH1(var.2)_rc); m=16/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.525549; ----RACAGCTGTT---- ; cor=; Ncor= a 0 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 0 g 0 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 0 t 0 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0 0
MA1100.2_rc_shift4 (ASCL1_rc)				; oligos_8nt_mkv2_m8 versus MA1100.2_rc (ASCL1_rc); m=17/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.522275; ----rgCAGCTGyy---- ; cor=; Ncor= a 0 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 0 c 0 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 0 g 0 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 0 t 0 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0 0
MA0667.1_rc_shift4 (MYF6_rc)				; oligos_8nt_mkv2_m8 versus MA0667.1_rc (MYF6_rc); m=18/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.500608; ----RACAGyTGTT---- ; cor=; Ncor= a 0 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 0 c 0 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 0 g 0 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 0 t 0 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0 0
MA1648.1_shift4 (TCF12(var.2))				; oligos_8nt_mkv2_m8 versus MA1648.1 (TCF12(var.2)); m=19/20; ncol2=11; w=11; offset=2; strand=D; shift=4; score=0.482145; ----ssCACCTGCys--- ; cor=; Ncor= a 0 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 0 c 0 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 0 g 0 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 0 t 0 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0 0
MA0820.1_rc_shift4 (FIGLA_rc)				; oligos_8nt_mkv2_m8 versus MA0820.1_rc (FIGLA_rc); m=20/20; ncol2=10; w=10; offset=2; strand=R; shift=4; score=0.458351; ----wmCAGGTGkw---- ; cor=; Ncor= a 0 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 0 c 0 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 0 g 0 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 0 t 0 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_8nt_mkv2_m12_shift0 (oligos_8nt_mkv2_m12oligos_8nt_mkv2_m12)				; oligos_8nt_mkv2_m12 (oligos_8nt_mkv2_m12oligos_8nt_mkv2_m12); m=0 (reference); ncol1=16; shift=0; ncol=16; gmyGaCAGCTGtCrkc ; Alignment reference a 1 3 0 1 4 0 6 0 0 0 0 1 0 4 0 0 c 1 3 2 0 0 6 0 0 6 0 0 1 5 0 0 4 g 4 0 0 5 1 0 0 6 0 0 6 0 0 2 3 1 t 0 0 4 0 1 0 0 0 0 6 0 4 1 0 3 1
MA0796.1_shift2 (TGIF1)				; oligos_8nt_mkv2_m12 versus MA0796.1 (TGIF1); m=1/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.707454; --TGACAGCTGTCA-- ; cor=; Ncor= a 0 0 39.0 9.0 8828.0 1.0 8861.0 14.0 452.0 1.0 11.0 45.0 36.0 9034.0 0 0 c 0 0 19.0 8.0 3.0 13304.0 5.0 20.0 10562.0 62.0 13.0 24.0 13485.0 17.0 0 0 g 0 0 1.0 13499.0 20.0 5.0 22.0 12673.0 2520.0 8.0 13261.0 3.0 13.0 32.0 0 0 t 0 0 13221.0 4.0 0.0 7.0 4.0 963.0 12.0 12775.0 9.0 12656.0 17.0 33.0 0 0
MA1571.1_shift2 (TGIF2LX)				; oligos_8nt_mkv2_m12 versus MA1571.1 (TGIF2LX); m=2/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.705007; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 237.0 52.0 2539.0 32.0 2539.0 37.0 380.0 37.0 64.0 428.0 45.0 2539.0 0 0 c 0 0 355.0 187.0 64.0 2539.0 18.0 575.0 1568.0 318.0 23.0 127.0 2539.0 132.0 0 0 g 0 0 145.0 2539.0 132.0 29.0 316.0 1566.0 554.0 23.0 2539.0 72.0 172.0 361.0 0 0 t 0 0 2539.0 47.0 428.0 59.0 40.0 362.0 38.0 2539.0 22.0 2539.0 66.0 232.0 0 0
MA1572.1_shift2 (TGIF2LY)				; oligos_8nt_mkv2_m12 versus MA1572.1 (TGIF2LY); m=3/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.695627; --TGACAgcTGTCA-- ; cor=; Ncor= a 0 0 736.0 162.0 5209.0 123.0 5209.0 130.0 1033.0 140.0 175.0 1084.0 135.0 5209.0 0 0 c 0 0 836.0 270.0 163.0 5209.0 37.0 1267.0 2850.0 848.0 61.0 371.0 5209.0 362.0 0 0 g 0 0 415.0 5209.0 349.0 66.0 833.0 2794.0 1188.0 73.0 5209.0 145.0 259.0 807.0 0 0 t 0 0 5209.0 104.0 1197.0 144.0 110.0 1018.0 138.0 5209.0 121.0 5209.0 172.0 679.0 0 0
MA0797.1_shift2 (TGIF2)				; oligos_8nt_mkv2_m12 versus MA0797.1 (TGIF2); m=4/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.695368; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 477.0 97.0 11801.0 127.0 11801.0 324.0 1501.0 71.0 150.0 601.0 70.0 11801.0 0 0 c 0 0 421.0 48.0 34.0 11801.0 25.0 262.0 7459.0 410.0 77.0 621.0 11801.0 172.0 0 0 g 0 0 153.0 11801.0 396.0 51.0 270.0 11801.0 4341.0 57.0 11801.0 123.0 136.0 395.0 0 0 t 0 0 11801.0 52.0 155.0 156.0 41.0 2690.0 91.0 11801.0 83.0 11801.0 113.0 420.0 0 0
MA0832.1_rc_shift1 (Tcf21_rc)				; oligos_8nt_mkv2_m12 versus MA0832.1_rc (Tcf21_rc); m=5/24; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.674332; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 60.0 19.0 171.0 171.0 0.0 171.0 1.0 2.0 0.0 0.0 0.0 3.0 46.0 17.0 0 c 0 32.0 80.0 0.0 20.0 171.0 0.0 1.0 171.0 0.0 0.0 0.0 23.0 22.0 70.0 0 g 0 49.0 23.0 23.0 4.0 0.0 0.0 171.0 0.0 1.0 171.0 10.0 1.0 76.0 29.0 0 t 0 30.0 50.0 5.0 0.0 0.0 0.0 0.0 0.0 171.0 0.0 171.0 171.0 28.0 55.0 0
MA0783.1_shift2 (PKNOX2)				; oligos_8nt_mkv2_m12 versus MA0783.1 (PKNOX2); m=6/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.663775; --TGACAGsTGTCA-- ; cor=; Ncor= a 0 0 37.0 1.0 1124.0 0.0 1169.0 7.0 39.0 0.0 3.0 10.0 11.0 1190.0 0 0 c 0 0 0.0 6.0 3.0 1250.0 0.0 0.0 304.0 4.0 1.0 29.0 1265.0 1.0 0 0 g 0 0 9.0 1389.0 13.0 0.0 1.0 1298.0 702.0 0.0 1370.0 5.0 6.0 21.0 0 0 t 0 0 1192.0 0.0 6.0 9.0 4.0 118.0 0.0 1204.0 0.0 1167.0 3.0 9.0 0 0
MA1641.1_rc_shift2 (MYF5_rc)				; oligos_8nt_mkv2_m12 versus MA1641.1_rc (MYF5_rc); m=7/24; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.653238; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2697.0 3507.0 7489.0 95.0 10966.0 100.0 222.0 129.0 43.0 578.0 1572.0 2554.0 0 0 c 0 0 2701.0 2985.0 1368.0 10912.0 47.0 230.0 10658.0 69.0 161.0 1774.0 3145.0 3258.0 0 0 g 0 0 3258.0 3146.0 1775.0 161.0 68.0 10657.0 230.0 47.0 10911.0 1368.0 2986.0 2700.0 0 0 t 0 0 2554.0 1572.0 578.0 42.0 129.0 223.0 100.0 10965.0 95.0 7490.0 3507.0 2698.0 0 0
MA1619.1_rc_shift2 (Ptf1a(var.2)_rc)				; oligos_8nt_mkv2_m12 versus MA1619.1_rc (Ptf1a(var.2)_rc); m=8/24; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.637389; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1871.0 1974.0 4341.0 49.0 7121.0 33.0 223.0 28.0 27.0 529.0 1216.0 1607.0 0 0 c 0 0 1803.0 2426.0 1065.0 7150.0 40.0 299.0 6689.0 65.0 28.0 1308.0 1629.0 1974.0 0 0 g 0 0 1977.0 1632.0 1312.0 27.0 66.0 6697.0 307.0 41.0 7149.0 1070.0 2430.0 1803.0 0 0 t 0 0 1602.0 1221.0 535.0 27.0 26.0 224.0 34.0 7119.0 49.0 4346.0 1978.0 1869.0 0 0
MA0500.2_rc_shift2 (MYOG_rc)				; oligos_8nt_mkv2_m12 versus MA0500.2_rc (MYOG_rc); m=9/24; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.622075; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1485.1_shift1 (FERD3L)				; oligos_8nt_mkv2_m12 versus MA1485.1 (FERD3L); m=10/24; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.620861; -GyrmCAGCTGTyAC- ; cor=; Ncor= a 0 2158.0 450.0 14384.0 15390.0 36.0 29605.0 0.0 3649.0 81.0 0.0 1268.0 103.0 29605.0 0.0 0 c 0 68.0 20049.0 2443.0 9363.0 29605.0 126.0 841.0 29605.0 129.0 0.0 3878.0 8664.0 809.0 29605.0 0 g 0 29605.0 348.0 12703.0 3142.0 0.0 118.0 29605.0 471.0 210.0 29605.0 3395.0 5920.0 9815.0 0.0 0 t 0 225.0 9557.0 74.0 1710.0 0.0 144.0 4691.0 0.0 29605.0 0.0 21065.0 14919.0 958.0 48.0 0
MA0499.2_shift2 (MYOD1)				; oligos_8nt_mkv2_m12 versus MA0499.2 (MYOD1); m=11/24; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.590856; --cwgCACCTGTymy- ; cor=; Ncor= a 0 0 7175.0 9462.0 4549.0 349.0 32281.0 463.0 534.0 241.0 208.0 402.0 1808.0 9462.0 5687.0 0 c 0 0 11279.0 7103.0 5622.0 33328.0 583.0 25275.0 32504.0 563.0 386.0 2555.0 19052.0 10485.0 11760.0 0 g 0 0 8118.0 8444.0 21884.0 354.0 849.0 7336.0 932.0 366.0 33468.0 1699.0 4440.0 6202.0 7495.0 0 t 0 0 7728.0 9291.0 2245.0 269.0 587.0 1226.0 330.0 33130.0 238.0 29644.0 9000.0 8151.0 9358.0 0
MA0521.1_rc_shift2 (Tcf12_rc)				; oligos_8nt_mkv2_m12 versus MA0521.1_rc (Tcf12_rc); m=12/24; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.586871; --cwsCAGCTGYy--- ; cor=; Ncor= a 0 0 2191.0 3642.0 1682.0 0.0 12895.0 0.0 0.0 0.0 0.0 0.0 17.0 0 0 0 c 0 0 4836.0 2925.0 3811.0 12895.0 0.0 1889.0 12887.0 0.0 0.0 3951.0 5123.0 0 0 0 g 0 0 3005.0 2416.0 5527.0 0.0 0.0 10822.0 0.0 0.0 12895.0 124.0 1585.0 0 0 0 t 0 0 2863.0 3912.0 1875.0 0.0 0.0 184.0 8.0 12895.0 0.0 8820.0 6170.0 0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; oligos_8nt_mkv2_m12 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.581043; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0
MA1472.1_shift3 (BHLHA15(var.2))				; oligos_8nt_mkv2_m12 versus MA1472.1 (BHLHA15(var.2)); m=14/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.545434; ---avCAGCTGyy--- ; cor=; Ncor= a 0 0 0 697.0 897.0 47.0 1504.0 11.0 445.0 54.0 0.0 54.0 202.0 0 0 0 c 0 0 0 281.0 607.0 1504.0 33.0 30.0 1504.0 4.0 0.0 610.0 410.0 0 0 0 g 0 0 0 357.0 591.0 6.0 33.0 1504.0 72.0 0.0 1504.0 489.0 316.0 0 0 0 t 0 0 0 170.0 81.0 33.0 137.0 467.0 11.0 1504.0 0.0 1015.0 577.0 0 0 0
MA1620.1_shift2 (Ptf1a(var.3))				; oligos_8nt_mkv2_m12 versus MA1620.1 (Ptf1a(var.3)); m=15/24; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.535664; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; oligos_8nt_mkv2_m12 versus MA1635.1 (BHLHE22(var.2)); m=16/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.532109; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; oligos_8nt_mkv2_m12 versus MA1100.2_rc (ASCL1_rc); m=17/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.528421; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0
MA0665.1_rc_shift3 (MSC_rc)				; oligos_8nt_mkv2_m12 versus MA0665.1_rc (MSC_rc); m=18/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.522048; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 4.0 69.0 0.0 0.0 0.0 1.0 0.0 7.0 0 0 0 c 0 0 0 4.0 4.0 69.0 0.0 3.0 69.0 0.0 3.0 3.0 18.0 0 0 0 g 0 0 0 9.0 10.0 0.0 0.0 69.0 12.0 0.0 69.0 12.0 0.0 0 0 0 t 0 0 0 0.0 3.0 0.0 0.0 0.0 0.0 69.0 0.0 69.0 69.0 0 0 0
MA0816.1_rc_shift3 (Ascl2_rc)				; oligos_8nt_mkv2_m12 versus MA0816.1_rc (Ascl2_rc); m=19/24; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.521859; ---rrCAGCTGyt--- ; cor=; Ncor= a 0 0 0 199.0 94.0 2.0 300.0 1.0 18.0 15.0 1.0 1.0 16.0 0 0 0 c 0 0 0 28.0 15.0 300.0 0.0 2.0 300.0 0.0 0.0 172.0 63.0 0 0 0 g 0 0 0 101.0 206.0 1.0 0.0 300.0 23.0 0.0 300.0 41.0 36.0 0 0 0 t 0 0 0 34.0 6.0 0.0 4.0 3.0 7.0 300.0 3.0 128.0 237.0 0 0 0
MA0691.1_shift3 (TFAP4)				; oligos_8nt_mkv2_m12 versus MA0691.1 (TFAP4); m=20/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.515482; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0667.1_shift3 (MYF6)				; oligos_8nt_mkv2_m12 versus MA0667.1 (MYF6); m=21/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.50546; ---AACArCTGTY--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 2.0 0.0 0 0 0 c 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 22.0 159.0 0 0 0 g 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 0.0 7.0 0 0 0 t 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0 444.0 444.0 0 0 0
MA0048.2_shift3 (NHLH1)				; oligos_8nt_mkv2_m12 versus MA0048.2 (NHLH1); m=22/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.453073; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0
MA0820.1_shift3 (FIGLA)				; oligos_8nt_mkv2_m12 versus MA0820.1 (FIGLA); m=23/24; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.445329; ---wmCACCTGkw--- ; cor=; Ncor= a 0 0 0 886.0 690.0 0.0 1780.0 0.0 9.0 56.0 36.0 154.0 455.0 0 0 0 c 0 0 0 270.0 693.0 1780.0 46.0 1780.0 1780.0 0.0 33.0 225.0 283.0 0 0 0 g 0 0 0 175.0 160.0 0.0 0.0 527.0 311.0 17.0 1780.0 569.0 289.0 0 0 0 t 0 0 0 449.0 237.0 29.0 14.0 0.0 0.0 1780.0 65.0 832.0 753.0 0 0 0
MA0774.1_rc_shift7 (MEIS2_rc)				; oligos_8nt_mkv2_m12 versus MA0774.1_rc (MEIS2_rc); m=24/24; ncol2=8; w=8; offset=7; strand=R; shift=7; score=0.412467; -------sCTGTCAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 88.0 67.0 0.0 5.0 62.0 0.0 1351.0 1351.0 0 c 0 0 0 0 0 0 0 650.0 1351.0 4.0 0.0 25.0 1351.0 40.0 314.0 0 g 0 0 0 0 0 0 0 701.0 98.0 7.0 1351.0 3.0 0.0 3.0 264.0 0 t 0 0 0 0 0 0 0 157.0 83.0 1351.0 9.0 1351.0 0.0 31.0 408.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2 (oligos_7nt_mkv2_m2oligos_7nt_mkv2_m2); m=0 (reference); ncol1=16; shift=0; ncol=16; gsrGACAGCTGCTkmt ; Alignment reference a 8 7 11 6 32 1 34 0 0 0 0 1 5 5 9 8 c 6 9 6 4 0 33 0 0 33 0 0 30 2 6 10 7 g 13 12 11 24 2 0 0 33 1 0 34 1 2 14 8 8 t 7 6 6 0 0 0 0 1 0 34 0 2 25 9 7 11
MA0832.1_shift1 (Tcf21)				; oligos_7nt_mkv2_m2 versus MA0832.1 (Tcf21); m=1/26; ncol2=14; w=14; offset=1; strand=D; shift=1; score=0.704741; -ryAACAGCTGTTry- ; cor=; Ncor= a 0 55.0 28.0 171.0 171.0 0.0 171.0 0.0 0.0 0.0 0.0 0.0 5.0 50.0 30.0 0 c 0 29.0 76.0 1.0 10.0 171.0 1.0 0.0 171.0 0.0 0.0 4.0 23.0 23.0 49.0 0 g 0 70.0 22.0 23.0 0.0 0.0 0.0 171.0 1.0 0.0 171.0 20.0 0.0 80.0 32.0 0 t 0 17.0 46.0 3.0 0.0 0.0 0.0 2.0 1.0 171.0 0.0 171.0 171.0 19.0 60.0 0
MA0499.2_rc_shift1 (MYOD1_rc)				; oligos_7nt_mkv2_m2 versus MA0499.2_rc (MYOD1_rc); m=2/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.704498; -rkrACAGGTGcwg-- ; cor=; Ncor= a 0 9358.0 8151.0 9000.0 29644.0 238.0 33130.0 330.0 1226.0 587.0 269.0 2245.0 9291.0 7728.0 0 0 c 0 7495.0 6202.0 4440.0 1699.0 33468.0 366.0 932.0 7336.0 849.0 354.0 21884.0 8444.0 8118.0 0 0 g 0 11760.0 10485.0 19052.0 2555.0 386.0 563.0 32504.0 25275.0 583.0 33328.0 5622.0 7103.0 11279.0 0 0 t 0 5687.0 9462.0 1808.0 402.0 208.0 241.0 534.0 463.0 32281.0 349.0 4549.0 9462.0 7175.0 0 0
MA0500.2_rc_shift2 (MYOG_rc)				; oligos_7nt_mkv2_m2 versus MA0500.2_rc (MYOG_rc); m=3/26; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.662681; --sarCAGCTGyts-- ; cor=; Ncor= a 0 0 5310.0 8475.0 7192.0 88.0 21777.0 95.0 169.0 163.0 182.0 1678.0 4692.0 5070.0 0 0 c 0 0 6369.0 3718.0 2706.0 21985.0 179.0 131.0 21963.0 236.0 101.0 10790.0 5483.0 5596.0 0 0 g 0 0 5660.0 5497.0 10792.0 102.0 238.0 21964.0 130.0 176.0 21988.0 2730.0 3754.0 6381.0 0 0 t 0 0 5018.0 4667.0 1667.0 182.0 163.0 167.0 95.0 21782.0 86.0 7159.0 8428.0 5310.0 0 0
MA1485.1_rc_shift1 (FERD3L_rc)				; oligos_7nt_mkv2_m2 versus MA1485.1_rc (FERD3L_rc); m=4/26; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.651797; -GTrACAGCTGkyrC- ; cor=; Ncor= a 0 48.0 958.0 14919.0 21065.0 0.0 29605.0 0.0 4691.0 144.0 0.0 1710.0 74.0 9557.0 225.0 0 c 0 0.0 9815.0 5920.0 3395.0 29605.0 210.0 471.0 29605.0 118.0 0.0 3142.0 12703.0 348.0 29605.0 0 g 0 29605.0 809.0 8664.0 3878.0 0.0 129.0 29605.0 841.0 126.0 29605.0 9363.0 2443.0 20049.0 68.0 0 t 0 0.0 29605.0 103.0 1268.0 0.0 81.0 3649.0 0.0 29605.0 36.0 15390.0 14384.0 450.0 2158.0 0
MA1641.1_shift2 (MYF5)				; oligos_7nt_mkv2_m2 versus MA1641.1 (MYF5); m=5/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.646514; --gvaCAGCTGtbc-- ; cor=; Ncor= a 0 0 2698.0 3507.0 7490.0 95.0 10965.0 100.0 223.0 129.0 42.0 578.0 1572.0 2554.0 0 0 c 0 0 2700.0 2986.0 1368.0 10911.0 47.0 230.0 10657.0 68.0 161.0 1775.0 3146.0 3258.0 0 0 g 0 0 3258.0 3145.0 1774.0 161.0 69.0 10658.0 230.0 47.0 10912.0 1368.0 2985.0 2701.0 0 0 t 0 0 2554.0 1572.0 578.0 43.0 129.0 222.0 100.0 10966.0 95.0 7489.0 3507.0 2697.0 0 0
MA1619.1_shift2 (Ptf1a(var.2))				; oligos_7nt_mkv2_m2 versus MA1619.1 (Ptf1a(var.2)); m=6/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.641559; --rmaCAGCTGtky-- ; cor=; Ncor= a 0 0 1869.0 1978.0 4346.0 49.0 7119.0 34.0 224.0 26.0 27.0 535.0 1221.0 1602.0 0 0 c 0 0 1803.0 2430.0 1070.0 7149.0 41.0 307.0 6697.0 66.0 27.0 1312.0 1632.0 1977.0 0 0 g 0 0 1974.0 1629.0 1308.0 28.0 65.0 6689.0 299.0 40.0 7150.0 1065.0 2426.0 1803.0 0 0 t 0 0 1607.0 1216.0 529.0 27.0 28.0 223.0 33.0 7121.0 49.0 4341.0 1974.0 1871.0 0 0
MA0521.1_shift3 (Tcf12)				; oligos_7nt_mkv2_m2 versus MA0521.1 (Tcf12); m=7/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.633621; ---rRCAGCTGswg-- ; cor=; Ncor= a 0 0 0 6170.0 8820.0 0.0 12895.0 8.0 184.0 0.0 0.0 1875.0 3912.0 2863.0 0 0 c 0 0 0 1585.0 124.0 12895.0 0.0 0.0 10822.0 0.0 0.0 5527.0 2416.0 3005.0 0 0 g 0 0 0 5123.0 3951.0 0.0 0.0 12887.0 1889.0 0.0 12895.0 3811.0 2925.0 4836.0 0 0 t 0 0 0 17.0 0.0 0.0 0.0 0.0 0.0 12895.0 0.0 1682.0 3642.0 2191.0 0 0
MA1621.1_rc_shift1 (Rbpjl_rc)				; oligos_7nt_mkv2_m2 versus MA1621.1_rc (Rbpjl_rc); m=8/26; ncol2=14; w=14; offset=1; strand=R; shift=1; score=0.630481; -grsaCAGGTGtkbs- ; cor=; Ncor= a 0 2286.0 2537.0 2179.0 5784.0 124.0 9313.0 96.0 363.0 86.0 137.0 782.0 1364.0 2210.0 2289.0 0 c 0 2281.0 1958.0 2687.0 1581.0 9295.0 132.0 317.0 672.0 110.0 103.0 1492.0 1802.0 2549.0 2476.0 0 g 0 3003.0 2884.0 3247.0 1718.0 131.0 144.0 9005.0 8533.0 70.0 9273.0 1373.0 3117.0 2427.0 2881.0 0 t 0 2082.0 2273.0 1539.0 569.0 102.0 63.0 234.0 84.0 9386.0 139.0 6005.0 3369.0 2466.0 2006.0 0
MA0745.2_rc_shift1 (SNAI2_rc)				; oligos_7nt_mkv2_m2 versus MA0745.2_rc (SNAI2_rc); m=9/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.617695; -rykACAGGTGcrt-- ; cor=; Ncor= a 0 17906.0 8917.0 8747.0 37272.0 126.0 45229.0 344.0 234.0 227.0 622.0 2359.0 16344.0 9958.0 0 0 c 0 8219.0 12297.0 6281.0 1263.0 45257.0 196.0 487.0 326.0 424.0 323.0 26742.0 9490.0 11169.0 0 0 g 0 13476.0 11016.0 18771.0 6467.0 254.0 313.0 44739.0 45144.0 202.0 44463.0 6393.0 12314.0 10031.0 0 0 t 0 6215.0 13586.0 12017.0 814.0 179.0 78.0 246.0 112.0 44963.0 408.0 10322.0 7668.0 14658.0 0 0
MA1618.1_shift2 (Ptf1a)				; oligos_7nt_mkv2_m2 versus MA1618.1 (Ptf1a); m=10/26; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.600104; --dmaCAGATGttkh- ; cor=; Ncor= a 0 0 4092.0 4476.0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 3491.0 3754.0 0 c 0 0 2989.0 3662.0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 3601.0 3689.0 0 g 0 0 3661.0 3568.0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 3664.0 3376.0 0 t 0 0 3699.0 2735.0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 3685.0 3622.0 0
MA1631.1_shift2 (ASCL1(var.2))				; oligos_7nt_mkv2_m2 versus MA1631.1 (ASCL1(var.2)); m=11/26; ncol2=13; w=13; offset=2; strand=D; shift=2; score=0.573184; --cdgCACCTGCysc- ; cor=; Ncor= a 0 0 6833.0 8952.0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 7083.0 5972.0 0 c 0 0 11805.0 7998.0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 10555.0 11996.0 0 g 0 0 8371.0 8601.0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 8939.0 8356.0 0 t 0 0 7347.0 8805.0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 7779.0 8032.0 0
MA0830.2_rc_shift1 (TCF4_rc)				; oligos_7nt_mkv2_m2 versus MA0830.2_rc (TCF4_rc); m=12/26; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.569602; -ssggCAGGTGccg-- ; cor=; Ncor= a 0 6827.0 6430.0 6126.0 3555.0 242.0 27398.0 188.0 751.0 512.0 215.0 1737.0 7059.0 6225.0 0 0 c 0 7662.0 7964.0 4933.0 5281.0 28432.0 679.0 1197.0 1733.0 1295.0 321.0 18498.0 8618.0 7140.0 0 0 g 0 9843.0 8658.0 12872.0 18935.0 540.0 1016.0 27724.0 26765.0 635.0 28686.0 5062.0 6754.0 10052.0 0 0 t 0 5133.0 6413.0 5534.0 1694.0 251.0 372.0 356.0 216.0 27023.0 243.0 4168.0 7034.0 6048.0 0 0
MA1467.1_rc_shift3 (ATOH1(var.2)_rc)				; oligos_7nt_mkv2_m2 versus MA1467.1_rc (ATOH1(var.2)_rc); m=13/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.557056; ---RACAGCTGTT--- ; cor=; Ncor= a 0 0 0 426.0 944.0 0.0 1368.0 0.0 181.0 76.0 0.0 0.0 0.0 0 0 0 c 0 0 0 0.0 35.0 1368.0 0.0 0.0 1368.0 0.0 0.0 182.0 466.0 0 0 0 g 0 0 0 943.0 296.0 0.0 0.0 1368.0 0.0 0.0 1368.0 179.0 171.0 0 0 0 t 0 0 0 0.0 93.0 0.0 0.0 204.0 0.0 1368.0 0.0 1008.0 1368.0 0 0 0
MA0816.1_shift3 (Ascl2)				; oligos_7nt_mkv2_m2 versus MA0816.1 (Ascl2); m=14/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.555606; ---arCAGCTGyy--- ; cor=; Ncor= a 0 0 0 237.0 128.0 3.0 300.0 7.0 3.0 4.0 0.0 6.0 34.0 0 0 0 c 0 0 0 36.0 41.0 300.0 0.0 23.0 300.0 0.0 1.0 206.0 101.0 0 0 0 g 0 0 0 63.0 172.0 0.0 0.0 300.0 2.0 0.0 300.0 15.0 28.0 0 0 0 t 0 0 0 16.0 1.0 1.0 15.0 18.0 1.0 300.0 2.0 94.0 199.0 0 0 0
MA1472.1_rc_shift3 (BHLHA15(var.2)_rc)				; oligos_7nt_mkv2_m2 versus MA1472.1_rc (BHLHA15(var.2)_rc); m=15/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.547892; ---rrCAGCTGbt--- ; cor=; Ncor= a 0 0 0 577.0 1015.0 0.0 1504.0 11.0 467.0 137.0 33.0 81.0 170.0 0 0 0 c 0 0 0 316.0 489.0 1504.0 0.0 72.0 1504.0 33.0 6.0 591.0 357.0 0 0 0 g 0 0 0 410.0 610.0 0.0 4.0 1504.0 30.0 33.0 1504.0 607.0 281.0 0 0 0 t 0 0 0 202.0 54.0 0.0 54.0 445.0 11.0 1504.0 47.0 897.0 697.0 0 0 0
MA1100.2_rc_shift3 (ASCL1_rc)				; oligos_7nt_mkv2_m2 versus MA1100.2_rc (ASCL1_rc); m=16/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.53709; ---rgCAGCTGyy--- ; cor=; Ncor= a 0 0 0 1194.0 1349.0 29.0 4413.0 20.0 625.0 218.0 14.0 354.0 726.0 0 0 0 c 0 0 0 889.0 814.0 4413.0 121.0 1320.0 4413.0 60.0 0.0 3079.0 1495.0 0 0 0 g 0 0 0 1487.0 3065.0 0.0 24.0 4413.0 1288.0 157.0 4413.0 521.0 926.0 0 0 0 t 0 0 0 843.0 177.0 52.0 118.0 729.0 107.0 4413.0 0.0 1334.0 1267.0 0 0 0
MA1620.1_shift2 (Ptf1a(var.3))				; oligos_7nt_mkv2_m2 versus MA1620.1 (Ptf1a(var.3)); m=17/26; ncol2=12; w=12; offset=2; strand=D; shift=2; score=0.535168; --rmaCACCTGtky-- ; cor=; Ncor= a 0 0 2834.0 2613.0 6867.0 184.0 10033.0 116.0 256.0 85.0 68.0 527.0 1678.0 2293.0 0 0 c 0 0 2469.0 3700.0 1188.0 9887.0 60.0 8567.0 9612.0 94.0 109.0 1615.0 2527.0 3004.0 0 0 g 0 0 2664.0 2379.0 1410.0 113.0 84.0 1182.0 294.0 98.0 9972.0 1516.0 3341.0 2183.0 0 0 t 0 0 2324.0 1599.0 826.0 107.0 114.0 426.0 129.0 10014.0 142.0 6633.0 2745.0 2811.0 0 0
MA1635.1_shift3 (BHLHE22(var.2))				; oligos_7nt_mkv2_m2 versus MA1635.1 (BHLHE22(var.2)); m=18/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.530379; ---csCAGCTGsg--- ; cor=; Ncor= a 0 0 0 3886.0 4453.0 0.0 18267.0 1.0 14.0 0.0 14.0 1526.0 4398.0 0 0 0 c 0 0 0 5621.0 5110.0 18331.0 37.0 53.0 18288.0 52.0 15.0 7269.0 4447.0 0 0 0 g 0 0 0 4447.0 7267.0 11.0 52.0 18288.0 53.0 37.0 18327.0 5112.0 5625.0 0 0 0 t 0 0 0 4402.0 1526.0 14.0 0.0 14.0 1.0 18267.0 0.0 4449.0 3886.0 0 0 0
MA0665.1_shift3 (MSC)				; oligos_7nt_mkv2_m2 versus MA0665.1 (MSC); m=19/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.526806; ---AACAGCTGTT--- ; cor=; Ncor= a 0 0 0 69.0 69.0 0.0 69.0 0.0 0.0 0.0 0.0 3.0 0.0 0 0 0 c 0 0 0 0.0 12.0 69.0 0.0 12.0 69.0 0.0 0.0 10.0 9.0 0 0 0 g 0 0 0 18.0 3.0 3.0 0.0 69.0 3.0 0.0 69.0 4.0 4.0 0 0 0 t 0 0 0 7.0 0.0 1.0 0.0 0.0 0.0 69.0 4.0 69.0 69.0 0 0 0
MA0691.1_shift3 (TFAP4)				; oligos_7nt_mkv2_m2 versus MA0691.1 (TFAP4); m=20/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.511725; ---AwCAGCTGwT--- ; cor=; Ncor= a 0 0 0 3423.0 2159.0 0.0 3423.0 2.0 21.0 1.0 0.0 1810.0 299.0 0 0 0 c 0 0 0 500.0 546.0 3423.0 2.0 85.0 3423.0 1.0 1.0 114.0 682.0 0 0 0 g 0 0 0 337.0 62.0 0.0 0.0 3423.0 49.0 0.0 3423.0 333.0 433.0 0 0 0 t 0 0 0 228.0 1264.0 0.0 0.0 14.0 6.0 3423.0 0.0 1613.0 3423.0 0 0 0
MA0048.2_shift3 (NHLH1)				; oligos_7nt_mkv2_m2 versus MA0048.2 (NHLH1); m=21/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.502345; ---cGCAGCTGCk--- ; cor=; Ncor= a 0 0 0 788.0 461.0 3.0 2166.0 0.0 96.0 0.0 2.0 296.0 308.0 0 0 0 c 0 0 0 2166.0 179.0 2166.0 3.0 301.0 2166.0 4.0 4.0 2166.0 736.0 0 0 0 g 0 0 0 181.0 2166.0 0.0 1.0 2166.0 124.0 4.0 2166.0 102.0 2166.0 0 0 0 t 0 0 0 111.0 142.0 0.0 0.0 114.0 0.0 2166.0 1.0 350.0 1489.0 0 0 0
MA0667.1_rc_shift3 (MYF6_rc)				; oligos_7nt_mkv2_m2 versus MA0667.1_rc (MYF6_rc); m=22/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.500679; ---RACAGyTGTT--- ; cor=; Ncor= a 0 0 0 444.0 444.0 0.0 444.0 56.0 12.0 0.0 0.0 1.0 7.0 0 0 0 c 0 0 0 7.0 0.0 444.0 0.0 35.0 256.0 7.0 0.0 24.0 70.0 0 0 0 g 0 0 0 159.0 22.0 2.0 0.0 353.0 30.0 3.0 444.0 18.0 12.0 0 0 0 t 0 0 0 0.0 2.0 0.0 11.0 12.0 159.0 444.0 0.0 444.0 444.0 0 0 0
MA1648.1_shift3 (TCF12(var.2))				; oligos_7nt_mkv2_m2 versus MA1648.1 (TCF12(var.2)); m=23/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.49648; ---ssCACCTGCys-- ; cor=; Ncor= a 0 0 0 13014.0 14835.0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 13867.0 11414.0 0 0 c 0 0 0 19393.0 17594.0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 17603.0 18154.0 0 0 g 0 0 0 16996.0 18560.0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 14293.0 20060.0 0 0 t 0 0 0 12473.0 10887.0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 16113.0 12248.0 0 0
MA0522.3_shift3 (TCF3)				; oligos_7nt_mkv2_m2 versus MA0522.3 (TCF3); m=24/26; ncol2=11; w=11; offset=3; strand=D; shift=3; score=0.493071; ---svCACCTGCss-- ; cor=; Ncor= a 0 0 0 6270.0 8032.0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 7276.0 5485.0 0 0 c 0 0 0 10212.0 9269.0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 8727.0 10122.0 0 0 g 0 0 0 8539.0 9432.0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 8025.0 9222.0 0 0 t 0 0 0 6240.0 4528.0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 7233.0 6432.0 0 0
MA0820.1_rc_shift3 (FIGLA_rc)				; oligos_7nt_mkv2_m2 versus MA0820.1_rc (FIGLA_rc); m=25/26; ncol2=10; w=10; offset=3; strand=R; shift=3; score=0.457399; ---wmCAGGTGkw--- ; cor=; Ncor= a 0 0 0 753.0 832.0 65.0 1780.0 0.0 0.0 14.0 29.0 237.0 449.0 0 0 0 c 0 0 0 289.0 569.0 1780.0 17.0 311.0 527.0 0.0 0.0 160.0 175.0 0 0 0 g 0 0 0 283.0 225.0 33.0 0.0 1780.0 1780.0 46.0 1780.0 693.0 270.0 0 0 0 t 0 0 0 455.0 154.0 36.0 56.0 9.0 0.0 1780.0 0.0 690.0 886.0 0 0 0
MA1559.1_shift3 (SNAI3)				; oligos_7nt_mkv2_m2 versus MA1559.1 (SNAI3); m=26/26; ncol2=10; w=10; offset=3; strand=D; shift=3; score=0.443204; ---arCAGGTGya--- ; cor=; Ncor= a 0 0 0 2952.0 3917.0 23.0 6248.0 118.0 0.0 0.0 94.0 432.0 4680.0 0 0 0 c 0 0 0 661.0 0.0 6248.0 0.0 29.0 18.0 12.0 0.0 6248.0 688.0 0 0 0 g 0 0 0 1525.0 2331.0 0.0 34.0 6248.0 6248.0 28.0 6248.0 1701.0 1569.0 0 0 0 t 0 0 0 1110.0 183.0 35.0 3.0 43.0 0.0 6248.0 30.0 3161.0 553.0 0 0 0