 |
| Hierachical clustering of the patterns | ||
|
||
|
| >homer_10_nro10 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +0.50 | +0.50 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| consensus: CCTGKCTCTG | |||
| >homer_12_nro12 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| consensus: RGRGRGRGRG | |||
| >homer_14_nro14 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.33 | +0.00 | +0.33 | +0.33 |
| consensus: YTYCCTGGAD | |||
| >homer_17_nro17 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| consensus: TGTGTGTGTG | |||
| >MEME_ChIP_1_nro20 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| consensus: ATGYWAA | |||
| >MEME_ChIP_2_nro21 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.50 | +0.50 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.33 | +0.00 | +0.33 | +0.33 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| consensus: CCMCDCCC | |||
| >MEME_ChIP_4_nro23 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| consensus: RGGAAR | |||
| >MEME_ChIP_5_nro24 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.50 | +0.50 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| consensus: TGCGCAKR | |||
| >MEME_ChIP_6_nro25 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| consensus: CAAGGTCA | |||
| >MEME_ChIP_7_nro26 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| consensus: CWGGRA | |||
| >MEME_ChIP_8_nro27 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.50 | +0.50 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.50 | +0.50 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| consensus: CCKCCKCC | |||
| >MEME_ChIP_9_nro28 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.50 | +0.50 | +0.00 | +0.00 |
| consensus: CCCCWCCYCCM | |||
| >oligos_7nt_mkv5_m3_nro47 | |||
| Score = null, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.00 | +0.50 | +0.50 | +0.00 |
| consensus: SSCGCCCTCSS | |||
| >node_nro19 (patterns: >homer_16_nro16 and >homer_18_nro18 ) | |||
| Score = 54.42, FDR = null | |||
| A | C | G | T |
| +0.67 | +0.33 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| consensus: MAAAAAAAAA | |||
| >node_nro25 (patterns: >homer_6_nro6 and >MEME_ChIP_22_nro41 ) | |||
| Score = 49.80, FDR = null | |||
| A | C | G | T |
| +0.50 | +0.50 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.50 | +0.50 |
| +0.00 | +0.00 | +0.33 | +0.67 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.67 | +0.33 |
| +0.00 | +0.33 | +0.00 | +0.67 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.33 | +0.67 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.67 | +0.33 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.33 | +0.00 | +0.00 | +0.67 |
| +0.00 | +0.00 | +0.67 | +0.33 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.00 | +0.00 | +0.50 | +0.50 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| consensus: MKKTTKYTKTKTTTWKWWKG | |||
| >node_nro32 (patterns: >node_nro23 and >local_words_8nt_m3_nro62 ) | |||
| Score = 44.11, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.14 | +0.00 | +0.43 | +0.43 |
| +0.50 | +0.50 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.33 | +0.00 | +0.00 | +0.67 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| consensus: YKMATWTGCATRW | |||
| >node_nro33 (patterns: >node_nro31 and >MEME_ChIP_24_nro43 ) | |||
| Score = 43.73, FDR = null | |||
| A | C | G | T |
| +0.20 | +0.20 | +0.00 | +0.60 |
| +0.50 | +0.10 | +0.10 | +0.30 |
| +0.45 | +0.00 | +0.09 | +0.45 |
| +0.12 | +0.00 | +0.00 | +0.88 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.88 | +0.00 | +0.12 |
| +0.54 | +0.00 | +0.00 | +0.46 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.47 | +0.53 |
| +0.57 | +0.07 | +0.00 | +0.36 |
| +0.40 | +0.00 | +0.60 | +0.00 |
| +0.50 | +0.50 | +0.00 | +0.00 |
| consensus: TWWTATGCWAATKWRM | |||
| >node_nro34 (patterns: >node_nro20 and >node_nro11 ) | |||
| Score = 43.00, FDR = null | |||
| A | C | G | T |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.31 | +0.19 | +0.25 | +0.25 |
| +0.13 | +0.43 | +0.00 | +0.43 |
| +0.73 | +0.00 | +0.00 | +0.27 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +0.00 | +0.17 | +0.83 |
| +0.00 | +0.33 | +0.67 | +0.00 |
| +0.40 | +0.00 | +0.00 | +0.60 |
| +0.00 | +0.11 | +0.00 | +0.89 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.08 | +0.00 | +0.00 | +0.92 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.92 | +0.00 | +0.08 | +0.00 |
| +0.42 | +0.00 | +0.00 | +0.58 |
| +0.24 | +0.29 | +0.35 | +0.12 |
| +0.69 | +0.00 | +0.00 | +0.31 |
| +0.86 | +0.14 | +0.00 | +0.00 |
| +0.44 | +0.00 | +0.00 | +0.56 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.12 | +0.50 | +0.38 | +0.00 |
| consensus: WYAYWTTSWTATGCAWAWSWAWRS | |||
| >node_nro35 (patterns: >node_nro17 and >node_nro9 ) | |||
| Score = 41.47, FDR = null | |||
| A | C | G | T |
| +0.20 | +0.20 | +0.40 | +0.20 |
| +0.00 | +0.60 | +0.20 | +0.20 |
| +0.60 | +0.00 | +0.20 | +0.20 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.29 | +0.00 | +0.71 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.17 | +0.00 | +0.83 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.75 | +0.00 | +0.25 | +0.00 |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.25 | +0.25 | +0.25 | +0.25 |
| consensus: GCATAYGCGCATRYGCASN | |||
| >node_nro38 (patterns: >homer_3_nro3 and >homer_15_nro15 ) | |||
| Score = 39.08, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.33 | +0.00 | +0.00 | +0.67 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.33 | +0.00 | +0.00 | +0.67 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.33 | +0.00 | +0.00 | +0.67 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.20 | +0.40 | +0.20 | +0.20 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.00 | +0.33 | +0.33 | +0.33 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| consensus: SCWGCWGCWGCYBC | |||
| >node_nro39 (patterns: >MEME_ChIP_3_nro22 and >node_nro36 ) | |||
| Score = 38.27, FDR = null | |||
| A | C | G | T |
| +0.50 | +0.00 | +0.00 | +0.50 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.33 | +0.67 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.40 | +0.00 | +0.00 | +0.60 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| consensus: WRMATRACAAWRR | |||
| >node_nro40 (patterns: >node_nro37 and >homer_5_nro5 ) | |||
| Score = 37.36, FDR = null | |||
| A | C | G | T |
| +0.25 | +0.00 | +0.50 | +0.25 |
| +0.00 | +0.00 | +0.67 | +0.33 |
| +0.67 | +0.00 | +0.33 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.00 | +0.33 | +0.67 | +0.00 |
| +0.00 | +0.00 | +0.33 | +0.67 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +0.25 | +0.75 |
| +0.00 | +0.00 | +0.67 | +0.33 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.50 | +0.00 | +0.50 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| consensus: GKRGGYSKGGCCTKGRA | |||
| >node_nro41 (patterns: >node_nro30 and >oligos_8nt_mkv6_m3_nro58 ) | |||
| Score = 36.38, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.00 | +0.40 | +0.60 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.67 | +0.00 | +0.00 | +0.33 |
| +0.00 | +0.00 | +0.67 | +0.33 |
| +0.00 | +0.67 | +0.33 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +0.50 | +0.50 | +0.00 |
| +0.00 | +0.50 | +0.50 | +0.00 |
| consensus: SSCGCWKSCGSS | |||
| >node_nro42 (patterns: >homer_7_nro7 and >homer_11_nro11 ) | |||
| Score = 36.25, FDR = null | |||
| A | C | G | T |
| +0.00 | +0.00 | +0.00 | +1.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.67 | +0.00 | +0.33 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +0.00 | +1.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.33 | +0.33 | +0.00 | +0.33 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +0.00 | +0.50 | +0.00 | +0.50 |
| +0.00 | +0.67 | +0.33 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| +0.00 | +1.00 | +0.00 | +0.00 |
| +1.00 | +0.00 | +0.00 | +0.00 |
| consensus: TCYCAGCHCYSACA | |||
| Distance matrix | PFM | Matrix counts | HC-tree | FDR values |
This tool was developed by Matti Kankainen, University of Helsinki and Ari L?ytynoja, European Bioinformatics Institute
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? 2006 University of Helsinki
? 2006 European Bioinformatics Institute