$stepwise.lda
$stepwise.lda$max.p
[1] 15

$stepwise.lda$errors
 [1] 0.08461538 0.04615385 0.04615385 0.03846154 0.03846154 0.02307692
 [7] 0.02307692 0.03076923 0.03076923 0.03076923 0.02307692 0.03076923
[13] 0.03846154 0.04615385 0.04615385

$stepwise.lda$confusion.table
   step              error added.var added.var.name CTL.CTL CTL.MET MET.CTL
1     1 0.0846153846153846        10        Met4p.1      85       3       8
2     2 0.0461538461538461        13       Met31p.1      84       4       2
3     3 0.0461538461538461         3        Pho4p.3      84       4       2
4     4 0.0384615384615384         1        Pho4p.1      85       3       2
5     5 0.0384615384615384         2        Pho4p.2      85       3       2
6     6 0.0230769230769231        14       Met31p.2      87       1       2
7     7 0.0230769230769231         5      Pho4p.g.2      87       1       2
8     8 0.0307692307692308         9      Pho4p.t.3      86       2       2
9     9 0.0307692307692308        15       Met31p.3      86       2       2
10   10 0.0307692307692308         4      Pho4p.g.1      86       2       2
11   11 0.0230769230769231         6      Pho4p.g.3      87       1       2
12   12 0.0307692307692308         8      Pho4p.t.2      86       2       2
13   13 0.0384615384615384        12        Met4p.3      85       3       2
14   14 0.0461538461538461         7      Pho4p.t.1      85       3       3
15   15 0.0461538461538461        11        Met4p.2      85       3       3
   MET.MET
1       34
2       40
3       40
4       40
5       40
6       40
7       40
8       40
9       40
10      40
11      40
12      40
13      40
14      39
15      39

$stepwise.lda$best.pda
$stepwise.lda$best.pda$class
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL MET CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL CTL
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL CTL
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$stepwise.lda$best.pda$posterior
                 CTL          MET
YAL012W 4.051047e-05 9.999595e-01
YAL038W 9.999960e-01 4.039562e-06
YAR064W 1.032559e-02 9.896744e-01
YAR071W 9.965379e-01 3.462079e-03
YBL005W 9.999975e-01 2.546396e-06
YBL030C 9.999942e-01 5.833267e-06
YBR006W 5.523418e-01 4.476582e-01
YBR018C 9.999405e-01 5.951078e-05
YBR020W 9.998465e-01 1.535154e-04
YBR093C 9.999846e-01 1.536005e-05
YBR115C 9.950897e-01 4.910269e-03
YBR184W 6.976317e-01 3.023683e-01
YBR213W 9.647617e-02 9.035238e-01
YBR296C 9.998843e-01 1.156591e-04
YCL018W 9.998948e-01 1.051869e-04
YDL131W 9.994819e-01 5.180735e-04
YDL182W 9.999855e-01 1.451623e-05
YDL205C 9.999998e-01 1.793585e-07
YDL208W 1.755912e-02 9.824409e-01
YDL210W 9.823353e-01 1.766471e-02
YDR011W 9.924676e-01 7.532375e-03
YDR044W 9.999833e-01 1.671665e-05
YDR234W 9.998978e-01 1.022076e-04
YDR253C 1.334440e-04 9.998666e-01
YDR254W 1.225022e-04 9.998775e-01
YDR285W 9.729618e-01 2.703816e-02
YDR406W 9.999987e-01 1.325244e-06
YDR481C 7.930210e-01 2.069790e-01
YDR502C 4.340682e-05 9.999566e-01
YEL021W 9.998232e-01 1.768013e-04
YEL039C 9.999977e-01 2.282795e-06
YER026C 9.996361e-01 3.638979e-04
YER086W 9.999751e-01 2.493245e-05
YER091C 3.618952e-03 9.963810e-01
YER092W 3.618952e-03 9.963810e-01
YER125W 4.627172e-05 9.999537e-01
YER179W 9.999137e-01 8.625762e-05
YFR030W 3.133784e-03 9.968662e-01
YFR049W 1.071065e-02 9.892894e-01
YGL009C 9.999564e-01 4.362874e-05
YGL073W 9.999697e-01 3.032612e-05
YGL213C 1.000000e+00 4.156094e-08
YGR019W 9.077915e-01 9.220848e-02
YGR044C 9.998115e-01 1.885307e-04
YGR055W 8.163167e-04 9.991837e-01
YGR088W 9.999983e-01 1.715795e-06
YGR121C 1.000000e+00 2.760893e-08
YGR154C 3.338436e-05 9.999666e-01
YGR155W 1.943835e-05 9.999806e-01
YGR157W 7.314935e-01 2.685065e-01
YGR233C 9.249276e-01 7.507240e-02
YGR281W 5.345388e-01 4.654612e-01
YHL022C 9.997452e-01 2.548183e-04
YHL036W 1.584961e-03 9.984150e-01
YHL038C 1.584961e-03 9.984150e-01
YHR007C 9.980544e-01 1.945576e-03
YHR008C 9.999057e-01 9.427274e-05
YHR014W 9.973592e-01 2.640797e-03
YHR037W 9.998816e-01 1.183817e-04
YHR136C 7.958909e-01 2.041091e-01
YHR153C 9.996188e-01 3.812277e-04
YIL015W 9.902429e-01 9.757075e-03
YIL046W 2.074431e-01 7.925569e-01
YIL047C 2.074431e-01 7.925569e-01
YIL072W 9.776093e-01 2.239074e-02
YIL074C 1.785539e-04 9.998214e-01
YIR017C 3.275444e-04 9.996725e-01
YIR018W 4.939974e-04 9.995060e-01
YIR034C 9.999025e-01 9.749254e-05
YJL106W 9.999124e-01 8.760446e-05
YJL117W 8.256409e-02 9.174359e-01
YJL153C 9.850447e-01 1.495534e-02
YJL186W 2.079279e-03 9.979207e-01
YJL187C 8.974553e-04 9.991025e-01
YJL219W 9.999763e-01 2.374761e-05
YJR010W 6.151213e-07 9.999994e-01
YJR048W 9.995282e-01 4.717579e-04
YJR073C 9.999346e-01 6.538046e-05
YJR094C 9.999988e-01 1.170166e-06
YJR137C 3.501538e-01 6.498462e-01
YJR152W 9.950667e-01 4.933319e-03
YKL001C 3.639122e-07 9.999996e-01
YKL182W 9.990408e-01 9.592170e-04
YKL216W 9.999883e-01 1.165822e-05
YKR039W 1.000000e+00 3.083465e-08
YKR068C 1.386156e-03 9.986138e-01
YKR069W 1.669359e-03 9.983306e-01
YLR081W 5.340370e-01 4.659630e-01
YLR142W 9.879753e-01 1.202474e-02
YLR180W 9.434809e-01 5.651909e-02
YLR263W 9.995203e-01 4.796917e-04
YLR303W 1.584602e-06 9.999984e-01
YLR329W 9.999094e-01 9.058003e-05
YLR420W 9.999969e-01 3.073065e-06
YLR438W 9.999705e-01 2.951132e-05
YML051W 9.999934e-01 6.639095e-06
YML054C 9.911107e-01 8.889325e-03
YML075C 9.999595e-01 4.045369e-05
YML123C 9.999799e-01 2.005006e-05
YMR061W 1.126219e-03 9.988738e-01
YMR108W 9.997229e-01 2.770988e-04
YMR133W 9.966077e-01 3.392303e-03
YMR301C 3.606458e-03 9.963935e-01
YNL052W 9.989939e-01 1.006143e-03
YNL104C 9.798366e-01 2.016337e-02
YNL142W 9.999997e-01 2.923760e-07
YNL210W 9.997277e-01 2.722821e-04
YNL241C 9.999756e-01 2.441608e-05
YNL259C 1.393553e-03 9.986064e-01
YNL260C 8.199291e-04 9.991801e-01
YNL277W 2.178183e-07 9.999998e-01
YNR001C 9.999929e-01 7.119351e-06
YNR050C 9.996179e-01 3.820794e-04
YOL006C 9.999981e-01 1.948008e-06
YOR065W 9.985271e-01 1.472874e-03
YOR120W 9.477984e-01 5.220163e-02
YOR136W 6.784319e-03 9.932157e-01
YOR153W 9.999813e-01 1.865077e-05
YOR284W 2.249674e-03 9.977503e-01
YOR328W 9.999900e-01 1.001260e-05
YOR351C 9.976064e-01 2.393598e-03
YOR367W 3.789081e-03 9.962109e-01
YOR375C 9.994879e-01 5.121065e-04
YPL111W 9.999912e-01 8.795879e-06
YPL231W 9.959537e-01 4.046265e-03
YPL250C 6.221405e-03 9.937786e-01
YPR065W 6.063322e-01 3.936678e-01
YPR138C 9.999999e-01 1.286599e-07
YPR145W 9.984901e-01 1.509941e-03
YPR167C 2.483462e-02 9.751654e-01

$stepwise.lda$best.pda$call
lda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$stepwise.lda$best.pda$training.names
  [1] "YAL012W" "YAL038W" "YAR064W" "YAR071W" "YBL005W" "YBL030C" "YBR006W"
  [8] "YBR018C" "YBR020W" "YBR093C" "YBR115C" "YBR184W" "YBR213W" "YBR296C"
 [15] "YCL018W" "YDL131W" "YDL182W" "YDL205C" "YDL208W" "YDL210W" "YDR011W"
 [22] "YDR044W" "YDR234W" "YDR253C" "YDR254W" "YDR285W" "YDR406W" "YDR481C"
 [29] "YDR502C" "YEL021W" "YEL039C" "YER026C" "YER086W" "YER091C" "YER092W"
 [36] "YER125W" "YER179W" "YFR030W" "YFR049W" "YGL009C" "YGL073W" "YGL213C"
 [43] "YGR019W" "YGR044C" "YGR055W" "YGR088W" "YGR121C" "YGR154C" "YGR155W"
 [50] "YGR157W" "YGR233C" "YGR281W" "YHL022C" "YHL036W" "YHL038C" "YHR007C"
 [57] "YHR008C" "YHR014W" "YHR037W" "YHR136C" "YHR153C" "YIL015W" "YIL046W"
 [64] "YIL047C" "YIL072W" "YIL074C" "YIR017C" "YIR018W" "YIR034C" "YJL106W"
 [71] "YJL117W" "YJL153C" "YJL186W" "YJL187C" "YJL219W" "YJR010W" "YJR048W"
 [78] "YJR073C" "YJR094C" "YJR137C" "YJR152W" "YKL001C" "YKL182W" "YKL216W"
 [85] "YKR039W" "YKR068C" "YKR069W" "YLR081W" "YLR142W" "YLR180W" "YLR263W"
 [92] "YLR303W" "YLR329W" "YLR420W" "YLR438W" "YML051W" "YML054C" "YML075C"
 [99] "YML123C" "YMR061W" "YMR108W" "YMR133W" "YMR301C" "YNL052W" "YNL104C"
[106] "YNL142W" "YNL210W" "YNL241C" "YNL259C" "YNL260C" "YNL277W" "YNR001C"
[113] "YNR050C" "YOL006C" "YOR065W" "YOR120W" "YOR136W" "YOR153W" "YOR284W"
[120] "YOR328W" "YOR351C" "YOR367W" "YOR375C" "YPL111W" "YPL231W" "YPL250C"
[127] "YPR065W" "YPR138C" "YPR145W" "YPR167C"

$stepwise.lda$best.pda$training.label
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL MET
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$stepwise.lda$best.pda$pda.method
[1] "lda"

$stepwise.lda$best.pda$loo
[1] TRUE

$stepwise.lda$best.pda$validation
[1] "LOO"

$stepwise.lda$best.pda$confusion
      true
object CTL MET
   CTL  87   2
   MET   1  40
attr(,"error")
[1] 0.02307692


$stepwise.lda$best.p
[1] 11

$stepwise.lda$best.vars
 [1] 10 13  3  1  2 14  5  9 15  4  6

$stepwise.lda$best.var.names
 [1] "Met4p.1"   "Met31p.1"  "Pho4p.3"   "Pho4p.1"   "Pho4p.2"   "Met31p.2" 
 [7] "Pho4p.g.2" "Pho4p.t.3" "Met31p.3"  "Pho4p.g.1" "Pho4p.g.3"

$stepwise.lda$best.error
[1] 0.02307692

$stepwise.lda$pc.transform
[1] FALSE

$stepwise.lda$var.order
 [1] 10 13  3  1  2 14  5  9 15  4  6  8 12  7 11


$pc.stepwise.lda
$pc.stepwise.lda$max.p
[1] 15

$pc.stepwise.lda$errors
 [1] 0.15384615 0.11538462 0.06923077 0.06153846 0.03846154 0.03076923
 [7] 0.03076923 0.03076923 0.03076923 0.03076923 0.03846154 0.03846154
[13] 0.04615385 0.04615385 0.04615385

$pc.stepwise.lda$confusion.table
   step              error added.var added.var.name CTL.CTL CTL.MET MET.CTL
1     1  0.153846153846154         2         Comp.2      83       5      15
2     2  0.115384615384615         8         Comp.8      81       7       8
3     3 0.0692307692307692         5         Comp.5      85       3       6
4     4 0.0615384615384615         1         Comp.1      85       3       5
5     5 0.0384615384615384         6         Comp.6      85       3       2
6     6 0.0307692307692308         4         Comp.4      85       3       1
7     7 0.0307692307692308        10        Comp.10      85       3       1
8     8 0.0307692307692308        11        Comp.11      85       3       1
9     9 0.0307692307692308        14        Comp.14      85       3       1
10   10 0.0307692307692308        12        Comp.12      85       3       1
11   11 0.0384615384615384         3         Comp.3      85       3       2
12   12 0.0384615384615384         7         Comp.7      85       3       2
13   13 0.0461538461538461         9         Comp.9      84       4       2
14   14 0.0461538461538461        13        Comp.13      85       3       3
15   15 0.0461538461538461        15        Comp.15      85       3       3
   MET.MET
1       27
2       34
3       36
4       37
5       40
6       41
7       41
8       41
9       41
10      41
11      40
12      40
13      40
14      39
15      39

$pc.stepwise.lda$best.pda
$pc.stepwise.lda$best.pda$class
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL MET CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL MET CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET MET CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL CTL
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$pc.stepwise.lda$best.pda$posterior
                 CTL          MET
YAL012W 8.540241e-06 9.999915e-01
YAL038W 9.998269e-01 1.730821e-04
YAR064W 8.555360e-02 9.144464e-01
YAR071W 9.911168e-01 8.883233e-03
YBL005W 9.999831e-01 1.694663e-05
YBL030C 9.999686e-01 3.138286e-05
YBR006W 5.255703e-01 4.744297e-01
YBR018C 9.998181e-01 1.818823e-04
YBR020W 9.993580e-01 6.420368e-04
YBR093C 9.998775e-01 1.225204e-04
YBR115C 9.333818e-01 6.661822e-02
YBR184W 8.598320e-01 1.401680e-01
YBR213W 2.122295e-01 7.877705e-01
YBR296C 9.997872e-01 2.127650e-04
YCL018W 9.999360e-01 6.400513e-05
YDL131W 9.994064e-01 5.935881e-04
YDL182W 9.999588e-01 4.122572e-05
YDL205C 9.999993e-01 7.439140e-07
YDL208W 7.415831e-03 9.925842e-01
YDL210W 9.365115e-01 6.348848e-02
YDR011W 9.685819e-01 3.141808e-02
YDR044W 9.997361e-01 2.638641e-04
YDR234W 9.999118e-01 8.820614e-05
YDR253C 2.903195e-04 9.997097e-01
YDR254W 3.299173e-04 9.996701e-01
YDR285W 9.565858e-01 4.341423e-02
YDR406W 9.999942e-01 5.824342e-06
YDR481C 6.079229e-01 3.920771e-01
YDR502C 3.745602e-05 9.999625e-01
YEL021W 9.997844e-01 2.156370e-04
YEL039C 9.999974e-01 2.598194e-06
YER026C 9.997804e-01 2.195933e-04
YER086W 9.998638e-01 1.361640e-04
YER091C 4.145765e-02 9.585423e-01
YER092W 4.145765e-02 9.585423e-01
YER125W 6.091062e-05 9.999391e-01
YER179W 9.993972e-01 6.028263e-04
YFR030W 2.806065e-02 9.719394e-01
YFR049W 5.753461e-03 9.942465e-01
YGL009C 9.998365e-01 1.634571e-04
YGL073W 9.999962e-01 3.842417e-06
YGL213C 1.000000e+00 1.606458e-08
YGR019W 5.465005e-01 4.534995e-01
YGR044C 9.990972e-01 9.027713e-04
YGR055W 6.499431e-04 9.993501e-01
YGR088W 9.999986e-01 1.404562e-06
YGR121C 9.999998e-01 1.723267e-07
YGR154C 2.809584e-05 9.999719e-01
YGR155W 2.593351e-05 9.999741e-01
YGR157W 7.805914e-01 2.194086e-01
YGR233C 9.903318e-01 9.668169e-03
YGR281W 2.932328e-01 7.067672e-01
YHL022C 9.992512e-01 7.488345e-04
YHL036W 1.096297e-03 9.989037e-01
YHL038C 1.096297e-03 9.989037e-01
YHR007C 9.985072e-01 1.492839e-03
YHR008C 9.999354e-01 6.462969e-05
YHR014W 9.986271e-01 1.372895e-03
YHR037W 9.999638e-01 3.620136e-05
YHR136C 9.740231e-01 2.597691e-02
YHR153C 9.982030e-01 1.796962e-03
YIL015W 9.816497e-01 1.835035e-02
YIL046W 6.363600e-03 9.936364e-01
YIL047C 6.363600e-03 9.936364e-01
YIL072W 8.917104e-01 1.082896e-01
YIL074C 5.949534e-05 9.999405e-01
YIR017C 2.380201e-03 9.976198e-01
YIR018W 2.085803e-03 9.979142e-01
YIR034C 9.998972e-01 1.028233e-04
YJL106W 9.999064e-01 9.362329e-05
YJL117W 3.366458e-01 6.633542e-01
YJL153C 9.799565e-01 2.004349e-02
YJL186W 1.158825e-02 9.884117e-01
YJL187C 9.522175e-03 9.904778e-01
YJL219W 9.999261e-01 7.393301e-05
YJR010W 1.326275e-06 9.999987e-01
YJR048W 9.992868e-01 7.132390e-04
YJR073C 9.998775e-01 1.225381e-04
YJR094C 9.999962e-01 3.762917e-06
YJR137C 4.565898e-01 5.434102e-01
YJR152W 9.975843e-01 2.415658e-03
YKL001C 9.081251e-06 9.999909e-01
YKL182W 9.978744e-01 2.125622e-03
YKL216W 9.999529e-01 4.707456e-05
YKR039W 9.999987e-01 1.305710e-06
YKR068C 1.718143e-02 9.828186e-01
YKR069W 1.805184e-02 9.819482e-01
YLR081W 4.375175e-01 5.624825e-01
YLR142W 9.833412e-01 1.665884e-02
YLR180W 4.964851e-01 5.035149e-01
YLR263W 9.991301e-01 8.699426e-04
YLR303W 3.119804e-06 9.999969e-01
YLR329W 9.998442e-01 1.558086e-04
YLR420W 9.999960e-01 3.965483e-06
YLR438W 9.999346e-01 6.541118e-05
YML051W 9.999793e-01 2.069074e-05
YML054C 9.666388e-01 3.336119e-02
YML075C 9.993541e-01 6.459236e-04
YML123C 9.999975e-01 2.493413e-06
YMR061W 6.968580e-03 9.930314e-01
YMR108W 9.999492e-01 5.077319e-05
YMR133W 9.912718e-01 8.728205e-03
YMR301C 3.732959e-02 9.626704e-01
YNL052W 9.979180e-01 2.081956e-03
YNL104C 9.773265e-01 2.267351e-02
YNL142W 9.999985e-01 1.486106e-06
YNL210W 9.994275e-01 5.724854e-04
YNL241C 9.991964e-01 8.035566e-04
YNL259C 3.385899e-02 9.661410e-01
YNL260C 5.814235e-02 9.418577e-01
YNL277W 1.696078e-06 9.999983e-01
YNR001C 9.999856e-01 1.442075e-05
YNR050C 9.970274e-01 2.972574e-03
YOL006C 9.999985e-01 1.530608e-06
YOR065W 9.986431e-01 1.356915e-03
YOR120W 8.621134e-01 1.378866e-01
YOR136W 6.251504e-03 9.937485e-01
YOR153W 9.999949e-01 5.075368e-06
YOR284W 4.842181e-03 9.951578e-01
YOR328W 9.999765e-01 2.350302e-05
YOR351C 9.964905e-01 3.509474e-03
YOR367W 6.271475e-03 9.937285e-01
YOR375C 9.917475e-01 8.252527e-03
YPL111W 9.999510e-01 4.900161e-05
YPL231W 9.821426e-01 1.785736e-02
YPL250C 7.908430e-03 9.920916e-01
YPR065W 7.000042e-01 2.999958e-01
YPR138C 9.999995e-01 4.923810e-07
YPR145W 9.984645e-01 1.535537e-03
YPR167C 6.407262e-02 9.359274e-01

$pc.stepwise.lda$best.pda$call
lda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$pc.stepwise.lda$best.pda$training.names
  [1] "YAL012W" "YAL038W" "YAR064W" "YAR071W" "YBL005W" "YBL030C" "YBR006W"
  [8] "YBR018C" "YBR020W" "YBR093C" "YBR115C" "YBR184W" "YBR213W" "YBR296C"
 [15] "YCL018W" "YDL131W" "YDL182W" "YDL205C" "YDL208W" "YDL210W" "YDR011W"
 [22] "YDR044W" "YDR234W" "YDR253C" "YDR254W" "YDR285W" "YDR406W" "YDR481C"
 [29] "YDR502C" "YEL021W" "YEL039C" "YER026C" "YER086W" "YER091C" "YER092W"
 [36] "YER125W" "YER179W" "YFR030W" "YFR049W" "YGL009C" "YGL073W" "YGL213C"
 [43] "YGR019W" "YGR044C" "YGR055W" "YGR088W" "YGR121C" "YGR154C" "YGR155W"
 [50] "YGR157W" "YGR233C" "YGR281W" "YHL022C" "YHL036W" "YHL038C" "YHR007C"
 [57] "YHR008C" "YHR014W" "YHR037W" "YHR136C" "YHR153C" "YIL015W" "YIL046W"
 [64] "YIL047C" "YIL072W" "YIL074C" "YIR017C" "YIR018W" "YIR034C" "YJL106W"
 [71] "YJL117W" "YJL153C" "YJL186W" "YJL187C" "YJL219W" "YJR010W" "YJR048W"
 [78] "YJR073C" "YJR094C" "YJR137C" "YJR152W" "YKL001C" "YKL182W" "YKL216W"
 [85] "YKR039W" "YKR068C" "YKR069W" "YLR081W" "YLR142W" "YLR180W" "YLR263W"
 [92] "YLR303W" "YLR329W" "YLR420W" "YLR438W" "YML051W" "YML054C" "YML075C"
 [99] "YML123C" "YMR061W" "YMR108W" "YMR133W" "YMR301C" "YNL052W" "YNL104C"
[106] "YNL142W" "YNL210W" "YNL241C" "YNL259C" "YNL260C" "YNL277W" "YNR001C"
[113] "YNR050C" "YOL006C" "YOR065W" "YOR120W" "YOR136W" "YOR153W" "YOR284W"
[120] "YOR328W" "YOR351C" "YOR367W" "YOR375C" "YPL111W" "YPL231W" "YPL250C"
[127] "YPR065W" "YPR138C" "YPR145W" "YPR167C"

$pc.stepwise.lda$best.pda$training.label
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL MET
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$pc.stepwise.lda$best.pda$pda.method
[1] "lda"

$pc.stepwise.lda$best.pda$loo
[1] TRUE

$pc.stepwise.lda$best.pda$validation
[1] "LOO"

$pc.stepwise.lda$best.pda$confusion
      true
object CTL MET
   CTL  85   1
   MET   3  41
attr(,"error")
[1] 0.03076923


$pc.stepwise.lda$best.p
[1] 10

$pc.stepwise.lda$best.vars
 [1]  2  8  5  1  6  4 10 11 14 12

$pc.stepwise.lda$best.var.names
 [1] "Comp.2"  "Comp.8"  "Comp.5"  "Comp.1"  "Comp.6"  "Comp.4"  "Comp.10"
 [8] "Comp.11" "Comp.14" "Comp.12"

$pc.stepwise.lda$best.error
[1] 0.03076923

$pc.stepwise.lda$pc.transform
[1] TRUE

$pc.stepwise.lda$var.order
 [1]  2  8  5  1  6  4 10 11 14 12  3  7  9 13 15


$permut.stepwise.lda
$permut.stepwise.lda$confusion.table
        error CTL.CTL CTL.MET MET.CTL MET.MET
1   0.3230769      88       0      42       0
2   0.3000000      84       4      35       7
3   0.2923077      85       3      35       7
4   0.3230769      88       0      42       0
5   0.2769231      85       3      33       9
6   0.3230769      87       1      41       1
7   0.2923077      87       1      37       5
8   0.3076923      87       1      39       3
9   0.2923077      80       8      30      12
10  0.3076923      85       3      37       5
11  0.3230769      88       0      42       0
12  0.3076923      87       1      39       3
13  0.3076923      83       5      35       7
14  0.3076923      85       3      37       5
15  0.3153846      88       0      41       1
16  0.3230769      88       0      42       0
17  0.3153846      83       5      36       6
18  0.3230769      88       0      42       0
19  0.3076923      88       0      40       2
20  0.2846154      83       5      32      10
21  0.3230769      87       1      41       1
22  0.3000000      87       1      38       4
23  0.3000000      82       6      33       9
24  0.3230769      88       0      42       0
25  0.3230769      88       0      42       0
26  0.3230769      88       0      42       0
27  0.3153846      79       9      32      10
28  0.3076923      87       1      39       3
29  0.3230769      88       0      42       0
30  0.3230769      88       0      42       0
31  0.2923077      85       3      35       7
32  0.2923077      82       6      32      10
33  0.3230769      88       0      42       0
34  0.2846154      80       8      29      13
35  0.2461538      82       6      26      16
36  0.3000000      87       1      38       4
37  0.2923077      82       6      32      10
38  0.2615385      83       5      29      13
39  0.3230769      88       0      42       0
40  0.2923077      84       4      34       8
41  0.3230769      88       0      42       0
42  0.2461538      81       7      25      17
43  0.3076923      81       7      33       9
44  0.3230769      88       0      42       0
45  0.3076923      86       2      38       4
46  0.3230769      88       0      42       0
47  0.2846154      87       1      36       6
48  0.3230769      85       3      39       3
49  0.3000000      85       3      36       6
50  0.3000000      81       7      32      10
51  0.3230769      88       0      42       0
52  0.2923077      85       3      35       7
53  0.3000000      80       8      31      11
54  0.3153846      85       3      38       4
55  0.3076923      88       0      40       2
56  0.3230769      82       6      36       6
57  0.3230769      88       0      42       0
58  0.3000000      88       0      39       3
59  0.3230769      88       0      42       0
60  0.3000000      84       4      35       7
61  0.3076923      81       7      33       9
62  0.3153846      80       8      33       9
63  0.3000000      82       6      33       9
64  0.3230769      88       0      42       0
65  0.2923077      87       1      37       5
66  0.3230769      86       2      40       2
67  0.3230769      88       0      42       0
68  0.3076923      79       9      31      11
69  0.3230769      88       0      42       0
70  0.3076923      86       2      38       4
71  0.2923077      85       3      35       7
72  0.2923077      82       6      32      10
73  0.3230769      88       0      42       0
74  0.3230769      88       0      42       0
75  0.3076923      86       2      38       4
76  0.3000000      84       4      35       7
77  0.2538462      83       5      28      14
78  0.2923077      83       5      33       9
79  0.2923077      81       7      31      11
80  0.2846154      82       6      31      11
81  0.3230769      85       3      39       3
82  0.3153846      86       2      39       3
83  0.3230769      88       0      42       0
84  0.3230769      88       0      42       0
85  0.3076923      82       6      34       8
86  0.3000000      81       7      32      10
87  0.2923077      81       7      31      11
88  0.2615385      83       5      29      13
89  0.3076923      79       9      31      11
90  0.3230769      88       0      42       0
91  0.3230769      88       0      42       0
92  0.3230769      88       0      42       0
93  0.3230769      88       0      42       0
94  0.2923077      82       6      32      10
95  0.2923077      83       5      33       9
96  0.3000000      79       9      30      12
97  0.2769231      82       6      30      12
98  0.3230769      88       0      42       0
99  0.3230769      88       0      42       0
100 0.3000000      80       8      31      11

$permut.stepwise.lda$errors
    permut.1  permut.2  permut.3  permut.4  permut.5  permut.6  permut.7
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
3  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923
4  0.3230769 0.3230769 0.3230769 0.3230769 0.3000000 0.3230769 0.3076923
5  0.3230769 0.3153846 0.3153846 0.3230769 0.3000000 0.3307692 0.2923077
6  0.3230769 0.3153846 0.2923077 0.3230769 0.2846154 0.3307692 0.2923077
7  0.3230769 0.3153846 0.3000000 0.3230769 0.2769231 0.3307692 0.3153846
8  0.3230769 0.3000000 0.3000000 0.3230769 0.2769231 0.3384615 0.3153846
9  0.3230769 0.3000000 0.3076923 0.3230769 0.2769231 0.3461538 0.3230769
10 0.3307692 0.3076923 0.3153846 0.3307692 0.2846154 0.3615385 0.3230769
11 0.3307692 0.3230769 0.3230769 0.3384615 0.2846154 0.3692308 0.3384615
12 0.3307692 0.3230769 0.3461538 0.3615385 0.2923077 0.3692308 0.3384615
13 0.3384615 0.3384615 0.3615385 0.3769231 0.3076923 0.3769231 0.3307692
14 0.3538462 0.3538462 0.3769231 0.3846154 0.3384615 0.3846154 0.3461538
15 0.3692308 0.3769231 0.3923077 0.4076923 0.3461538 0.3846154 0.3538462
    permut.8  permut.9 permut.10 permut.11 permut.12 permut.13 permut.14
1  0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923
2  0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923
3  0.3076923 0.3230769 0.3230769 0.3230769 0.3076923 0.3153846 0.3076923
4  0.3076923 0.3076923 0.3230769 0.3230769 0.3076923 0.3076923 0.3076923
5  0.3076923 0.3076923 0.3230769 0.3230769 0.3076923 0.3076923 0.3076923
6  0.3153846 0.3153846 0.3307692 0.3230769 0.3076923 0.3076923 0.3076923
7  0.3307692 0.3076923 0.3230769 0.3230769 0.3153846 0.3153846 0.3076923
8  0.3230769 0.3000000 0.3076923 0.3307692 0.3153846 0.3153846 0.3076923
9  0.3307692 0.3076923 0.3153846 0.3307692 0.3153846 0.3230769 0.3153846
10 0.3307692 0.3000000 0.3307692 0.3538462 0.3307692 0.3384615 0.3230769
11 0.3461538 0.2923077 0.3384615 0.3538462 0.3230769 0.3538462 0.3230769
12 0.3769231 0.2923077 0.3384615 0.3769231 0.3230769 0.3692308 0.3307692
13 0.3615385 0.3307692 0.3615385 0.3846154 0.3384615 0.3769231 0.3384615
14 0.3769231 0.3615385 0.3692308 0.3846154 0.3461538 0.3846154 0.3461538
15 0.4076923 0.3769231 0.3692308 0.3923077 0.3538462 0.3923077 0.4000000
   permut.15 permut.16 permut.17 permut.18 permut.19 permut.20 permut.21
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846 0.3230769
2  0.3230769 0.3230769 0.3153846 0.3230769 0.3230769 0.3000000 0.3230769
3  0.3153846 0.3230769 0.3153846 0.3230769 0.3153846 0.3000000 0.3230769
4  0.3153846 0.3230769 0.3153846 0.3230769 0.3076923 0.3153846 0.3230769
5  0.3153846 0.3230769 0.3230769 0.3230769 0.3076923 0.3153846 0.3230769
6  0.3230769 0.3384615 0.3230769 0.3230769 0.3153846 0.2846154 0.3230769
7  0.3230769 0.3384615 0.3153846 0.3230769 0.3230769 0.3000000 0.3384615
8  0.3230769 0.3461538 0.3153846 0.3230769 0.3230769 0.3000000 0.3461538
9  0.3307692 0.3538462 0.3153846 0.3230769 0.3307692 0.3076923 0.3538462
10 0.3384615 0.3769231 0.3230769 0.3230769 0.3384615 0.3153846 0.3615385
11 0.3384615 0.3692308 0.3307692 0.3230769 0.3461538 0.3307692 0.3615385
12 0.3615385 0.3769231 0.3461538 0.3384615 0.3615385 0.3307692 0.3692308
13 0.3615385 0.3769231 0.3615385 0.3384615 0.3692308 0.3384615 0.3846154
14 0.3692308 0.3923077 0.3615385 0.3846154 0.3769231 0.3307692 0.3923077
15 0.3846154 0.4153846 0.4076923 0.4000000 0.4000000 0.3307692 0.4230769
   permut.22 permut.23 permut.24 permut.25 permut.26 permut.27 permut.28
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
3  0.3000000 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
4  0.3000000 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
5  0.3000000 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
6  0.3000000 0.3076923 0.3230769 0.3230769 0.3230769 0.3153846 0.3076923
7  0.3153846 0.3000000 0.3307692 0.3230769 0.3307692 0.3230769 0.3153846
8  0.3230769 0.3000000 0.3230769 0.3538462 0.3461538 0.3153846 0.3230769
9  0.3230769 0.3000000 0.3230769 0.3538462 0.3307692 0.3230769 0.3230769
10 0.3307692 0.3076923 0.3384615 0.3461538 0.3307692 0.3384615 0.3307692
11 0.3538462 0.3230769 0.3461538 0.3307692 0.3307692 0.3461538 0.3384615
12 0.3615385 0.3307692 0.3538462 0.3384615 0.3615385 0.3461538 0.3307692
13 0.3923077 0.3384615 0.3615385 0.3538462 0.3769231 0.3461538 0.3692308
14 0.4153846 0.3461538 0.3692308 0.3615385 0.4000000 0.3538462 0.3846154
15 0.4538462 0.3615385 0.3769231 0.4076923 0.4000000 0.3769231 0.3846154
   permut.29 permut.30 permut.31 permut.32 permut.33 permut.34 permut.35
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923 0.2846154
2  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3000000 0.2769231
3  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.2923077 0.2769231
4  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.2923077 0.2615385
5  0.3307692 0.3230769 0.3230769 0.3230769 0.3230769 0.3000000 0.2615385
6  0.3307692 0.3230769 0.3307692 0.2923077 0.3230769 0.2923077 0.2615385
7  0.3384615 0.3230769 0.3000000 0.2923077 0.3230769 0.2923077 0.2538462
8  0.3461538 0.3307692 0.2923077 0.2923077 0.3230769 0.2923077 0.2461538
9  0.3461538 0.3384615 0.3000000 0.2923077 0.3230769 0.2846154 0.2461538
10 0.3538462 0.3538462 0.3000000 0.3000000 0.3230769 0.2846154 0.2538462
11 0.3615385 0.3615385 0.3230769 0.3000000 0.3230769 0.3000000 0.2615385
12 0.3615385 0.3615385 0.3307692 0.3000000 0.3384615 0.3153846 0.2692308
13 0.3692308 0.3692308 0.3307692 0.3076923 0.3538462 0.3384615 0.2769231
14 0.3692308 0.3769231 0.3384615 0.3384615 0.3846154 0.3769231 0.3000000
15 0.3769231 0.4076923 0.3615385 0.3615385 0.4000000 0.3692308 0.3076923
   permut.36 permut.37 permut.38 permut.39 permut.40 permut.41 permut.42
1  0.3230769 0.3230769 0.3000000 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3230769 0.2615385 0.3230769 0.3153846 0.3230769 0.3230769
3  0.3230769 0.3230769 0.2615385 0.3230769 0.3000000 0.3230769 0.3230769
4  0.3230769 0.3230769 0.2615385 0.3230769 0.2923077 0.3230769 0.2769231
5  0.3230769 0.3076923 0.2692308 0.3230769 0.2923077 0.3307692 0.2538462
6  0.3076923 0.3076923 0.2769231 0.3230769 0.2923077 0.3384615 0.2461538
7  0.3000000 0.2923077 0.2846154 0.3230769 0.3153846 0.3461538 0.2538462
8  0.3000000 0.2923077 0.2923077 0.3230769 0.3230769 0.3461538 0.2538462
9  0.3076923 0.3000000 0.3076923 0.3307692 0.3230769 0.3538462 0.2615385
10 0.3230769 0.3000000 0.3076923 0.3538462 0.3461538 0.3538462 0.2846154
11 0.3230769 0.3000000 0.3384615 0.3307692 0.3615385 0.3692308 0.2923077
12 0.3307692 0.3153846 0.3384615 0.3384615 0.3538462 0.3692308 0.3153846
13 0.3384615 0.3230769 0.3307692 0.3692308 0.3538462 0.3769231 0.3461538
14 0.3615385 0.3307692 0.3384615 0.3692308 0.3307692 0.3923077 0.3692308
15 0.3692308 0.3615385 0.3846154 0.3846154 0.3769231 0.4230769 0.3923077
   permut.43 permut.44 permut.45 permut.46 permut.47 permut.48 permut.49
1  0.3230769 0.3230769 0.3153846 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3230769 0.3153846 0.3230769 0.2846154 0.3230769 0.3153846
3  0.3230769 0.3230769 0.3153846 0.3230769 0.2846154 0.3230769 0.3076923
4  0.3153846 0.3230769 0.3153846 0.3230769 0.2923077 0.3230769 0.3076923
5  0.3153846 0.3230769 0.3076923 0.3230769 0.2923077 0.3230769 0.3076923
6  0.3153846 0.3230769 0.3076923 0.3230769 0.3000000 0.3230769 0.3000000
7  0.3153846 0.3230769 0.3153846 0.3307692 0.3000000 0.3307692 0.3076923
8  0.3153846 0.3307692 0.3153846 0.3307692 0.3076923 0.3230769 0.3153846
9  0.3076923 0.3307692 0.3153846 0.3307692 0.3153846 0.3307692 0.3153846
10 0.3076923 0.3307692 0.3153846 0.3538462 0.3307692 0.3307692 0.3153846
11 0.3076923 0.3538462 0.3230769 0.3692308 0.3307692 0.3538462 0.3153846
12 0.3230769 0.3538462 0.3384615 0.3769231 0.3461538 0.3538462 0.3230769
13 0.3307692 0.3692308 0.3461538 0.3846154 0.3461538 0.3615385 0.3307692
14 0.3230769 0.3923077 0.3615385 0.3846154 0.3384615 0.3692308 0.3461538
15 0.3769231 0.4153846 0.3923077 0.4000000 0.3461538 0.4000000 0.3615385
   permut.50 permut.51 permut.52 permut.53 permut.54 permut.55 permut.56
1  0.3230769 0.3230769 0.3153846 0.3230769 0.3230769 0.3153846 0.3230769
2  0.3230769 0.3230769 0.3076923 0.3230769 0.3230769 0.3153846 0.3230769
3  0.3230769 0.3230769 0.3000000 0.3230769 0.3230769 0.3153846 0.3230769
4  0.3230769 0.3230769 0.3000000 0.3230769 0.3230769 0.3076923 0.3230769
5  0.3230769 0.3230769 0.3000000 0.3153846 0.3230769 0.3076923 0.3230769
6  0.3230769 0.3230769 0.3000000 0.3076923 0.3307692 0.3076923 0.3230769
7  0.3307692 0.3230769 0.2923077 0.3076923 0.3307692 0.3153846 0.3307692
8  0.3307692 0.3230769 0.3000000 0.3153846 0.3230769 0.3153846 0.3230769
9  0.3230769 0.3307692 0.2923077 0.3153846 0.3153846 0.3230769 0.3307692
10 0.3307692 0.3307692 0.3000000 0.3000000 0.3153846 0.3384615 0.3384615
11 0.3000000 0.3384615 0.3076923 0.3230769 0.3153846 0.3461538 0.3384615
12 0.3153846 0.3384615 0.3153846 0.3153846 0.3307692 0.3615385 0.3461538
13 0.3230769 0.3538462 0.3307692 0.3384615 0.3230769 0.3692308 0.3615385
14 0.3384615 0.3769231 0.3230769 0.3307692 0.3692308 0.3615385 0.3692308
15 0.3615385 0.4000000 0.3384615 0.3538462 0.3846154 0.3846154 0.3769231
   permut.57 permut.58 permut.59 permut.60 permut.61 permut.62 permut.63
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846 0.3153846
3  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846 0.3153846
4  0.3230769 0.3076923 0.3230769 0.3230769 0.3230769 0.3153846 0.3076923
5  0.3230769 0.3000000 0.3230769 0.3153846 0.3153846 0.3230769 0.3307692
6  0.3230769 0.3076923 0.3230769 0.3076923 0.3076923 0.3153846 0.3230769
7  0.3230769 0.3076923 0.3307692 0.3000000 0.3076923 0.3153846 0.3000000
8  0.3307692 0.3076923 0.3307692 0.3076923 0.3153846 0.3153846 0.3000000
9  0.3461538 0.3153846 0.3307692 0.3076923 0.3153846 0.3153846 0.3000000
10 0.3538462 0.3230769 0.3461538 0.3076923 0.3307692 0.3153846 0.3000000
11 0.3615385 0.3384615 0.3692308 0.3153846 0.3461538 0.3307692 0.3076923
12 0.3846154 0.3538462 0.3538462 0.3230769 0.3538462 0.3384615 0.3230769
13 0.4000000 0.3615385 0.3615385 0.3230769 0.3615385 0.3461538 0.3384615
14 0.4000000 0.3769231 0.3692308 0.3153846 0.3769231 0.3692308 0.3538462
15 0.3923077 0.4153846 0.3846154 0.3846154 0.4153846 0.3538462 0.3615385
   permut.64 permut.65 permut.66 permut.67 permut.68 permut.69 permut.70
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
3  0.3230769 0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
4  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
5  0.3230769 0.3076923 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923
6  0.3230769 0.3000000 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923
7  0.3230769 0.2923077 0.3230769 0.3230769 0.3230769 0.3307692 0.3153846
8  0.3307692 0.3000000 0.3230769 0.3230769 0.3230769 0.3307692 0.3230769
9  0.3307692 0.3000000 0.3307692 0.3230769 0.3230769 0.3307692 0.3307692
10 0.3307692 0.3076923 0.3384615 0.3307692 0.3230769 0.3307692 0.3307692
11 0.3384615 0.3307692 0.3615385 0.3461538 0.3307692 0.3384615 0.3384615
12 0.3615385 0.3307692 0.3769231 0.3615385 0.3384615 0.3461538 0.3461538
13 0.3615385 0.3384615 0.3769231 0.3769231 0.3230769 0.3307692 0.3461538
14 0.3692308 0.3461538 0.3692308 0.3846154 0.3076923 0.3384615 0.3615385
15 0.3769231 0.3615385 0.3769231 0.4153846 0.3384615 0.3615385 0.3615385
   permut.71 permut.72 permut.73 permut.74 permut.75 permut.76 permut.77
1  0.2923077 0.3230769 0.3230769 0.3230769 0.3153846 0.3230769 0.3153846
2  0.2923077 0.3153846 0.3230769 0.3230769 0.3153846 0.3230769 0.3076923
3  0.2923077 0.3076923 0.3230769 0.3230769 0.3076923 0.3230769 0.2769231
4  0.2923077 0.3076923 0.3230769 0.3230769 0.3076923 0.3230769 0.2769231
5  0.3000000 0.3153846 0.3230769 0.3230769 0.3076923 0.3230769 0.2846154
6  0.3076923 0.3153846 0.3230769 0.3230769 0.3153846 0.3076923 0.2692308
7  0.3076923 0.3230769 0.3307692 0.3230769 0.3153846 0.3076923 0.2538462
8  0.3076923 0.2923077 0.3307692 0.3384615 0.3384615 0.3000000 0.2538462
9  0.3076923 0.2923077 0.3307692 0.3461538 0.3461538 0.3076923 0.2615385
10 0.3076923 0.2923077 0.3384615 0.3538462 0.3538462 0.3230769 0.2846154
11 0.3230769 0.3000000 0.3461538 0.3692308 0.3615385 0.3153846 0.2846154
12 0.3384615 0.3230769 0.3692308 0.3692308 0.3615385 0.3230769 0.3000000
13 0.3384615 0.3384615 0.3538462 0.3692308 0.3461538 0.3307692 0.3230769
14 0.3538462 0.3461538 0.3692308 0.4000000 0.3615385 0.3538462 0.3461538
15 0.3923077 0.3769231 0.3769231 0.4230769 0.3846154 0.3307692 0.3461538
   permut.78 permut.79 permut.80 permut.81 permut.82 permut.83 permut.84
1  0.3230769 0.3230769 0.3076923 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3076923 0.3230769 0.3000000 0.3230769 0.3153846 0.3230769 0.3230769
3  0.3000000 0.3230769 0.2923077 0.3230769 0.3153846 0.3230769 0.3230769
4  0.2923077 0.3230769 0.2846154 0.3230769 0.3153846 0.3230769 0.3230769
5  0.2923077 0.3230769 0.2846154 0.3230769 0.3230769 0.3230769 0.3230769
6  0.2923077 0.3153846 0.2846154 0.3230769 0.3153846 0.3230769 0.3230769
7  0.3076923 0.3076923 0.2923077 0.3307692 0.3153846 0.3307692 0.3230769
8  0.3076923 0.3076923 0.2846154 0.3307692 0.3153846 0.3307692 0.3307692
9  0.3076923 0.3076923 0.2846154 0.3230769 0.3307692 0.3384615 0.3307692
10 0.3153846 0.2923077 0.2846154 0.3307692 0.3384615 0.3461538 0.3307692
11 0.3153846 0.2923077 0.3076923 0.3307692 0.3538462 0.3538462 0.3307692
12 0.3230769 0.3153846 0.3153846 0.3461538 0.3692308 0.3615385 0.3615385
13 0.3307692 0.3307692 0.3230769 0.3769231 0.3769231 0.3615385 0.3846154
14 0.3923077 0.3461538 0.3307692 0.3769231 0.3461538 0.3692308 0.3923077
15 0.4000000 0.3692308 0.3384615 0.3923077 0.3769231 0.3846154 0.4000000
   permut.85 permut.86 permut.87 permut.88 permut.89 permut.90 permut.91
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3153846 0.3230769 0.3230769 0.3076923 0.3230769 0.3230769 0.3230769
3  0.3076923 0.3230769 0.3230769 0.2769231 0.3230769 0.3230769 0.3230769
4  0.3076923 0.3230769 0.3230769 0.2692308 0.3230769 0.3230769 0.3230769
5  0.3076923 0.3230769 0.3153846 0.2615385 0.3230769 0.3230769 0.3230769
6  0.3153846 0.3230769 0.3153846 0.2615385 0.3307692 0.3230769 0.3230769
7  0.3153846 0.3153846 0.2923077 0.2615385 0.3307692 0.3230769 0.3230769
8  0.3307692 0.3076923 0.3000000 0.2615385 0.3153846 0.3230769 0.3230769
9  0.3384615 0.3076923 0.3000000 0.2615385 0.3076923 0.3230769 0.3230769
10 0.3384615 0.3000000 0.3153846 0.2692308 0.3153846 0.3230769 0.3230769
11 0.3307692 0.3153846 0.3307692 0.2769231 0.3307692 0.3230769 0.3384615
12 0.3307692 0.3153846 0.3230769 0.2769231 0.3230769 0.3384615 0.3461538
13 0.3615385 0.3307692 0.3230769 0.3000000 0.3461538 0.3538462 0.3538462
14 0.3769231 0.3461538 0.3538462 0.3230769 0.3692308 0.3692308 0.3692308
15 0.4000000 0.3769231 0.3615385 0.3153846 0.3615385 0.4076923 0.3923077
   permut.92 permut.93 permut.94 permut.95 permut.96 permut.97 permut.98
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3153846 0.3230769 0.3230769
2  0.3230769 0.3230769 0.3230769 0.3076923 0.3153846 0.3153846 0.3230769
3  0.3230769 0.3230769 0.3153846 0.3000000 0.3153846 0.3000000 0.3230769
4  0.3230769 0.3230769 0.3076923 0.3000000 0.3153846 0.3000000 0.3230769
5  0.3230769 0.3230769 0.3076923 0.3000000 0.3153846 0.2923077 0.3230769
6  0.3230769 0.3230769 0.3076923 0.2923077 0.3230769 0.2923077 0.3230769
7  0.3230769 0.3307692 0.3000000 0.3076923 0.3230769 0.2846154 0.3230769
8  0.3230769 0.3307692 0.3000000 0.3230769 0.3153846 0.2846154 0.3230769
9  0.3230769 0.3307692 0.3000000 0.3076923 0.3153846 0.2846154 0.3307692
10 0.3230769 0.3384615 0.3000000 0.3076923 0.3000000 0.2769231 0.3615385
11 0.3307692 0.3461538 0.2923077 0.3307692 0.3076923 0.2846154 0.3692308
12 0.3384615 0.3461538 0.3076923 0.3307692 0.3230769 0.2846154 0.3769231
13 0.3846154 0.3384615 0.3307692 0.3153846 0.3384615 0.2923077 0.3846154
14 0.3923077 0.3538462 0.3461538 0.3230769 0.3384615 0.3076923 0.3923077
15 0.3923077 0.3538462 0.3538462 0.3384615 0.3461538 0.3230769 0.3769231
   permut.99 permut.100  err.mean     err.sd   err.sterr
1  0.3230769  0.3153846 0.3210000 0.00617082 0.000617082
2  0.3230769  0.3153846 0.3183846 0.01013300 0.001013300
3  0.3230769  0.3153846 0.3157692 0.01257932 0.001257932
4  0.3230769  0.3076923 0.3140769 0.01417359 0.001417359
5  0.3230769  0.3076923 0.3136154 0.01506486 0.001506486
6  0.3230769  0.3076923 0.3123077 0.01665321 0.001665321
7  0.3230769  0.3230769 0.3138462 0.01796536 0.001796536
8  0.3230769  0.3230769 0.3150000 0.01963065 0.001963065
9  0.3307692  0.3153846 0.3173846 0.02017851 0.002017851
10 0.3384615  0.3000000 0.3233077 0.02239220 0.002239220
11 0.3615385  0.3076923 0.3309231 0.02349988 0.002349988
12 0.3615385  0.3076923 0.3395385 0.02380413 0.002380413
13 0.3846154  0.3153846 0.3493077 0.02352822 0.002352822
14 0.3769231  0.3461538 0.3611538 0.02325430 0.002325430
15 0.3769231  0.3615385 0.3784615 0.02582683 0.002582683

$permut.stepwise.lda$best.p
[1] 10

$permut.stepwise.lda$best.error
[1] 0.3

$permut.stepwise.lda$best.pda
$permut.stepwise.lda$best.pda$class
  [1] CTL MET MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL
 [19] CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL
 [37] MET CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL MET MET CTL CTL
 [55] CTL CTL CTL CTL CTL CTL CTL CTL MET MET MET MET CTL CTL CTL CTL CTL CTL
 [73] MET CTL CTL CTL MET CTL CTL CTL CTL MET MET CTL CTL CTL CTL CTL CTL MET
 [91] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
[109] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL
[127] CTL CTL CTL CTL
Levels: CTL MET

$permut.stepwise.lda$best.pda$posterior
              CTL        MET
YAL012W 0.7863519 0.21364808
YAL038W 0.2753147 0.72468533
YAR064W 0.3590860 0.64091400
YAR071W 0.5892745 0.41072551
YBL005W 0.4914389 0.50856105
YBL030C 0.7722428 0.22775725
YBR006W 0.6816157 0.31838429
YBR018C 0.7594414 0.24055864
YBR020W 0.7511808 0.24881916
YBR093C 0.7023776 0.29762235
YBR115C 0.7620185 0.23798154
YBR184W 0.9065812 0.09341883
YBR213W 0.7787990 0.22120105
YBR296C 0.4831687 0.51683127
YCL018W 0.7273558 0.27264424
YDL131W 0.6827669 0.31723313
YDL182W 0.6210292 0.37897084
YDL205C 0.6951912 0.30480875
YDL208W 0.5462400 0.45375995
YDL210W 0.7303917 0.26960828
YDR011W 0.6737252 0.32627481
YDR044W 0.7441976 0.25580242
YDR234W 0.6747871 0.32521286
YDR253C 0.6990230 0.30097696
YDR254W 0.5801117 0.41988830
YDR285W 0.6267601 0.37323985
YDR406W 0.8063373 0.19366271
YDR481C 0.3379272 0.66207280
YDR502C 0.8545752 0.14542477
YEL021W 0.6983632 0.30163684
YEL039C 0.6888022 0.31119781
YER026C 0.8616310 0.13836904
YER086W 0.7872217 0.21277832
YER091C 0.8749622 0.12503778
YER092W 0.7459832 0.25401682
YER125W 0.8663875 0.13361250
YER179W 0.4989690 0.50103099
YFR030W 0.8888638 0.11113616
YFR049W 0.5557631 0.44423689
YGL009C 0.7488190 0.25118099
YGL073W 0.5376118 0.46238819
YGL213C 0.2951924 0.70480763
YGR019W 0.5816299 0.41837013
YGR044C 0.9189866 0.08101339
YGR055W 0.7250518 0.27494816
YGR088W 0.6441339 0.35586612
YGR121C 0.5991321 0.40086795
YGR154C 0.7000479 0.29995209
YGR155W 0.7015853 0.29841469
YGR157W 0.8916545 0.10834552
YGR233C 0.3679291 0.63207087
YGR281W 0.4952508 0.50474922
YHL022C 0.6677467 0.33225325
YHL036W 0.7828058 0.21719418
YHL038C 0.7828058 0.21719418
YHR007C 0.7435853 0.25641472
YHR008C 0.6792893 0.32071071
YHR014W 0.6323617 0.36763829
YHR037W 0.6062689 0.39373110
YHR136C 0.9021769 0.09782310
YHR153C 0.5782601 0.42173993
YIL015W 0.8014770 0.19852305
YIL046W 0.4971759 0.50282415
YIL047C 0.3065460 0.69345398
YIL072W 0.3356820 0.66431798
YIL074C 0.3848438 0.61515623
YIR017C 0.8603560 0.13964400
YIR018W 0.8625788 0.13742116
YIR034C 0.6800200 0.31998001
YJL106W 0.6371115 0.36288849
YJL117W 0.6218993 0.37810070
YJL153C 0.9447495 0.05525050
YJL186W 0.4808345 0.51916552
YJL187C 0.7424803 0.25751966
YJL219W 0.5635367 0.43646328
YJR010W 0.8308909 0.16910905
YJR048W 0.4576807 0.54231929
YJR073C 0.6022322 0.39776785
YJR094C 0.7267571 0.27324287
YJR137C 0.9434879 0.05651213
YJR152W 0.6270344 0.37296564
YKL001C 0.4128163 0.58718371
YKL182W 0.4451538 0.55484617
YKL216W 0.5702430 0.42975699
YKR039W 0.7019857 0.29801433
YKR068C 0.5735652 0.42643479
YKR069W 0.5973126 0.40268745
YLR081W 0.6232205 0.37677951
YLR142W 0.6868421 0.31315792
YLR180W 0.4519750 0.54802497
YLR263W 0.7456912 0.25430876
YLR303W 0.6789073 0.32109269
YLR329W 0.5057219 0.49427812
YLR420W 0.7409092 0.25909081
YLR438W 0.7528932 0.24710684
YML051W 0.7952590 0.20474102
YML054C 0.6410547 0.35894530
YML075C 0.5315621 0.46843789
YML123C 0.8274425 0.17255753
YMR061W 0.8054956 0.19450437
YMR108W 0.5910522 0.40894778
YMR133W 0.8554377 0.14456231
YMR301C 0.7703696 0.22963040
YNL052W 0.7287012 0.27129877
YNL104C 0.8094687 0.19053134
YNL142W 0.8050079 0.19499208
YNL210W 0.7562323 0.24376769
YNL241C 0.5956169 0.40438309
YNL259C 0.8190448 0.18095519
YNL260C 0.7860372 0.21396277
YNL277W 0.8985273 0.10147271
YNR001C 0.8076676 0.19233237
YNR050C 0.9587957 0.04120432
YOL006C 0.8104019 0.18959814
YOR065W 0.8730677 0.12693234
YOR120W 0.5293515 0.47064845
YOR136W 0.6985393 0.30146068
YOR153W 0.8388199 0.16118013
YOR284W 0.5806414 0.41935865
YOR328W 0.6896511 0.31034890
YOR351C 0.6101676 0.38983236
YOR367W 0.6976060 0.30239401
YOR375C 0.7440784 0.25592163
YPL111W 0.7312225 0.26877754
YPL231W 0.2909176 0.70908239
YPL250C 0.9342070 0.06579301
YPR065W 0.6257909 0.37420910
YPR138C 0.6862760 0.31372403
YPR145W 0.8124496 0.18755045
YPR167C 0.7629351 0.23706495

$permut.stepwise.lda$best.pda$call
lda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$permut.stepwise.lda$best.pda$training.label
  [1] CTL MET MET CTL MET CTL MET CTL MET CTL CTL CTL CTL MET CTL CTL CTL MET
 [19] MET MET MET CTL MET MET CTL CTL CTL CTL CTL CTL CTL CTL MET MET CTL CTL
 [37] MET CTL CTL MET MET CTL CTL CTL CTL MET CTL MET MET MET CTL MET CTL CTL
 [55] CTL MET CTL MET CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [73] CTL CTL CTL CTL CTL CTL MET MET CTL MET MET CTL MET CTL CTL CTL CTL MET
 [91] CTL CTL CTL CTL CTL CTL MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL
[109] MET MET CTL MET MET CTL MET CTL CTL CTL CTL MET CTL MET CTL MET MET CTL
[127] CTL CTL CTL CTL
Levels: CTL MET

$permut.stepwise.lda$best.pda$pda.method
[1] "lda"

$permut.stepwise.lda$best.pda$loo
[1] TRUE

$permut.stepwise.lda$best.pda$validation
[1] "LOO"

$permut.stepwise.lda$best.pda$confusion
      true
object CTL MET
   CTL  80  31
   MET   8  11
attr(,"error")
[1] 0.3



$permut.pc.stepwise.lda
$permut.pc.stepwise.lda$confusion.table
        error CTL.CTL CTL.MET MET.CTL MET.MET
1   0.2923077      86       2      36       6
2   0.3230769      83       5      37       5
3   0.3000000      88       0      39       3
4   0.3230769      78      10      32      10
5   0.3076923      88       0      40       2
6   0.2769231      82       6      30      12
7   0.2923077      88       0      38       4
8   0.3153846      82       6      35       7
9   0.2615385      85       3      31      11
10  0.3153846      88       0      41       1
11  0.3230769      88       0      42       0
12  0.3153846      87       1      40       2
13  0.3230769      88       0      42       0
14  0.3076923      86       2      38       4
15  0.3153846      86       2      39       3
16  0.3076923      88       0      40       2
17  0.3000000      88       0      39       3
18  0.3230769      88       0      42       0
19  0.3000000      88       0      39       3
20  0.3076923      86       2      38       4
21  0.2846154      83       5      32      10
22  0.3230769      88       0      42       0
23  0.3000000      81       7      32      10
24  0.2307692      82       6      24      18
25  0.3230769      88       0      42       0
26  0.3076923      85       3      37       5
27  0.3230769      87       1      41       1
28  0.3230769      87       1      41       1
29  0.2615385      83       5      29      13
30  0.2846154      83       5      32      10
31  0.3230769      84       4      38       4
32  0.3230769      88       0      42       0
33  0.3153846      88       0      41       1
34  0.3153846      85       3      38       4
35  0.3000000      80       8      31      11
36  0.3076923      86       2      38       4
37  0.2923077      87       1      37       5
38  0.2923077      88       0      38       4
39  0.3153846      83       5      36       6
40  0.2769231      85       3      33       9
41  0.2923077      85       3      35       7
42  0.3230769      88       0      42       0
43  0.2923077      86       2      36       6
44  0.3230769      88       0      42       0
45  0.3230769      88       0      42       0
46  0.2846154      84       4      33       9
47  0.3076923      85       3      37       5
48  0.3076923      88       0      40       2
49  0.3000000      82       6      33       9
50  0.3000000      88       0      39       3
51  0.2923077      87       1      37       5
52  0.3076923      81       7      33       9
53  0.3076923      86       2      38       4
54  0.3230769      88       0      42       0
55  0.3000000      83       5      34       8
56  0.3230769      88       0      42       0
57  0.3076923      80       8      32      10
58  0.2846154      88       0      37       5
59  0.2769231      83       5      31      11
60  0.3230769      88       0      42       0
61  0.3076923      88       0      40       2
62  0.3153846      87       1      40       2
63  0.3076923      88       0      40       2
64  0.2769231      87       1      35       7
65  0.3000000      83       5      34       8
66  0.3153846      87       1      40       2
67  0.2846154      84       4      33       9
68  0.3230769      88       0      42       0
69  0.3000000      86       2      37       5
70  0.2692308      82       6      29      13
71  0.3153846      88       0      41       1
72  0.2923077      80       8      30      12
73  0.3000000      86       2      37       5
74  0.3153846      88       0      41       1
75  0.3000000      84       4      35       7
76  0.3153846      88       0      41       1
77  0.3076923      84       4      36       6
78  0.3153846      85       3      38       4
79  0.3153846      87       1      40       2
80  0.3230769      88       0      42       0
81  0.3000000      84       4      35       7
82  0.3230769      88       0      42       0
83  0.2923077      78      10      28      14
84  0.2923077      80       8      30      12
85  0.3230769      88       0      42       0
86  0.3230769      88       0      42       0
87  0.3076923      87       1      39       3
88  0.2923077      87       1      37       5
89  0.3230769      88       0      42       0
90  0.3230769      88       0      42       0
91  0.3230769      88       0      42       0
92  0.3230769      88       0      42       0
93  0.2923077      84       4      34       8
94  0.3230769      88       0      42       0
95  0.3153846      87       1      40       2
96  0.2769231      83       5      31      11
97  0.3000000      85       3      36       6
98  0.3076923      87       1      39       3
99  0.3000000      87       1      38       4
100 0.2923077      85       3      35       7

$permut.pc.stepwise.lda$errors
    permut.1  permut.2  permut.3  permut.4  permut.5  permut.6  permut.7
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3076923 0.3230769
2  0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.2846154 0.3230769
3  0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.2923077 0.3153846
4  0.2923077 0.3230769 0.3230769 0.3230769 0.3230769 0.2923077 0.3000000
5  0.2923077 0.3230769 0.3000000 0.3230769 0.3230769 0.2923077 0.2923077
6  0.2923077 0.3230769 0.3000000 0.3230769 0.3076923 0.2923077 0.2923077
7  0.2923077 0.3230769 0.3076923 0.3307692 0.3076923 0.3000000 0.3000000
8  0.2923077 0.3230769 0.3076923 0.3384615 0.3153846 0.2769231 0.3153846
9  0.3000000 0.3230769 0.3076923 0.3307692 0.3153846 0.2769231 0.3230769
10 0.3076923 0.3307692 0.3230769 0.3230769 0.3153846 0.2846154 0.3461538
11 0.3230769 0.3461538 0.3384615 0.3230769 0.3230769 0.2846154 0.3384615
12 0.3384615 0.3230769 0.3076923 0.3307692 0.3307692 0.3076923 0.3692308
13 0.3538462 0.3384615 0.3153846 0.3230769 0.3307692 0.3153846 0.3538462
14 0.3769231 0.3538462 0.3384615 0.3307692 0.3307692 0.3461538 0.3692308
15 0.3846154 0.3846154 0.3538462 0.3461538 0.3384615 0.3461538 0.3846154
    permut.8  permut.9 permut.10 permut.11 permut.12 permut.13 permut.14
1  0.3230769 0.3153846 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.2923077 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
3  0.3230769 0.2769231 0.3153846 0.3230769 0.3230769 0.3230769 0.3076923
4  0.3230769 0.2615385 0.3153846 0.3230769 0.3230769 0.3230769 0.3076923
5  0.3230769 0.2615385 0.3153846 0.3230769 0.3230769 0.3230769 0.3076923
6  0.3230769 0.2615385 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
7  0.3230769 0.2846154 0.3307692 0.3230769 0.3230769 0.3307692 0.3153846
8  0.3307692 0.3000000 0.3307692 0.3230769 0.3230769 0.3384615 0.3230769
9  0.3307692 0.2923077 0.3307692 0.3230769 0.3230769 0.3384615 0.3230769
10 0.3307692 0.3076923 0.3384615 0.3230769 0.3153846 0.3384615 0.3307692
11 0.3153846 0.3230769 0.3538462 0.3230769 0.3307692 0.3461538 0.3461538
12 0.3384615 0.3230769 0.3769231 0.3307692 0.3384615 0.3692308 0.3538462
13 0.3461538 0.3384615 0.3769231 0.3538462 0.3615385 0.3692308 0.3692308
14 0.3538462 0.3307692 0.4000000 0.3692308 0.3615385 0.3692308 0.3846154
15 0.3461538 0.3538462 0.4538462 0.3846154 0.3923077 0.3846154 0.4000000
   permut.15 permut.16 permut.17 permut.18 permut.19 permut.20 permut.21
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3076923 0.3230769 0.3153846
2  0.3230769 0.3230769 0.3230769 0.3230769 0.3076923 0.3230769 0.2846154
3  0.3230769 0.3230769 0.3230769 0.3230769 0.3000000 0.3230769 0.2846154
4  0.3230769 0.3153846 0.3153846 0.3230769 0.3076923 0.3230769 0.2846154
5  0.3153846 0.3076923 0.3076923 0.3230769 0.3076923 0.3230769 0.2846154
6  0.3153846 0.3076923 0.3000000 0.3230769 0.3076923 0.3153846 0.2846154
7  0.3153846 0.3153846 0.3000000 0.3230769 0.3153846 0.3076923 0.2846154
8  0.3230769 0.3153846 0.3000000 0.3230769 0.3307692 0.3153846 0.2846154
9  0.3230769 0.3153846 0.3153846 0.3307692 0.3230769 0.3307692 0.2923077
10 0.3230769 0.3230769 0.3307692 0.3384615 0.3307692 0.3230769 0.3000000
11 0.3461538 0.3307692 0.3384615 0.3461538 0.3461538 0.3230769 0.3076923
12 0.3538462 0.3384615 0.3076923 0.3769231 0.3461538 0.3307692 0.3076923
13 0.3615385 0.3615385 0.3307692 0.3692308 0.3615385 0.3384615 0.3153846
14 0.3923077 0.4076923 0.3461538 0.3538462 0.3769231 0.3538462 0.3153846
15 0.3769231 0.4076923 0.3384615 0.3769231 0.3769231 0.3615385 0.3153846
   permut.22 permut.23 permut.24 permut.25 permut.26 permut.27 permut.28
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3076923 0.3230769 0.3230769
2  0.3230769 0.3076923 0.3153846 0.3230769 0.3076923 0.3230769 0.3230769
3  0.3230769 0.3076923 0.2923077 0.3230769 0.3076923 0.3230769 0.3230769
4  0.3230769 0.3076923 0.2769231 0.3230769 0.3076923 0.3230769 0.3230769
5  0.3230769 0.3153846 0.2615385 0.3230769 0.3076923 0.3230769 0.3230769
6  0.3230769 0.3153846 0.2461538 0.3230769 0.3076923 0.3230769 0.3230769
7  0.3230769 0.3000000 0.2461538 0.3230769 0.3153846 0.3230769 0.3230769
8  0.3230769 0.3000000 0.2461538 0.3230769 0.3307692 0.3230769 0.3230769
9  0.3384615 0.3076923 0.2384615 0.3230769 0.3307692 0.3307692 0.3461538
10 0.3692308 0.3153846 0.2384615 0.3230769 0.3384615 0.3384615 0.3461538
11 0.3692308 0.3153846 0.2307692 0.3230769 0.3461538 0.3307692 0.3461538
12 0.3923077 0.3153846 0.2384615 0.3307692 0.3538462 0.3384615 0.3538462
13 0.3923077 0.3384615 0.2538462 0.3538462 0.3538462 0.3615385 0.3461538
14 0.4076923 0.3538462 0.2615385 0.3769231 0.3615385 0.4000000 0.3692308
15 0.4000000 0.3307692 0.3000000 0.3846154 0.3769231 0.4307692 0.4153846
   permut.29 permut.30 permut.31 permut.32 permut.33 permut.34 permut.35
1  0.3153846 0.3076923 0.3230769 0.3230769 0.3153846 0.3230769 0.3153846
2  0.2923077 0.2923077 0.3230769 0.3230769 0.3153846 0.3153846 0.3153846
3  0.2769231 0.2846154 0.3230769 0.3230769 0.3153846 0.3153846 0.3153846
4  0.2692308 0.2846154 0.3230769 0.3230769 0.3153846 0.3153846 0.3000000
5  0.2615385 0.2846154 0.3230769 0.3230769 0.3153846 0.3153846 0.3000000
6  0.2692308 0.3000000 0.3230769 0.3230769 0.3153846 0.3153846 0.3000000
7  0.2692308 0.3000000 0.3230769 0.3230769 0.3153846 0.3153846 0.3000000
8  0.2692308 0.2923077 0.3384615 0.3230769 0.3153846 0.3230769 0.3000000
9  0.2692308 0.3000000 0.3384615 0.3230769 0.3153846 0.3153846 0.3000000
10 0.2692308 0.3230769 0.3461538 0.3461538 0.3230769 0.3307692 0.3076923
11 0.2846154 0.3153846 0.3538462 0.3692308 0.3307692 0.3461538 0.3230769
12 0.2846154 0.3230769 0.3692308 0.3692308 0.3615385 0.3692308 0.3307692
13 0.2923077 0.3461538 0.3692308 0.3769231 0.3615385 0.3692308 0.3153846
14 0.3230769 0.3307692 0.3538462 0.3923077 0.3461538 0.3769231 0.3384615
15 0.3384615 0.3923077 0.4000000 0.3769231 0.3538462 0.4000000 0.3307692
   permut.36 permut.37 permut.38 permut.39 permut.40 permut.41 permut.42
1  0.3153846 0.3076923 0.3230769 0.3230769 0.3153846 0.3153846 0.3230769
2  0.3076923 0.3000000 0.3230769 0.3230769 0.3076923 0.3076923 0.3230769
3  0.3076923 0.3076923 0.3153846 0.3230769 0.2769231 0.3000000 0.3230769
4  0.3153846 0.2923077 0.3153846 0.3153846 0.2769231 0.3000000 0.3230769
5  0.3153846 0.2923077 0.3076923 0.3230769 0.2769231 0.2923077 0.3230769
6  0.3153846 0.3153846 0.2923077 0.3153846 0.2846154 0.2923077 0.3230769
7  0.3153846 0.3153846 0.3153846 0.3153846 0.3000000 0.3000000 0.3230769
8  0.3230769 0.3153846 0.3153846 0.3153846 0.3000000 0.3000000 0.3230769
9  0.3230769 0.3230769 0.3307692 0.3307692 0.3000000 0.3153846 0.3307692
10 0.3230769 0.3230769 0.3384615 0.3307692 0.3076923 0.3153846 0.3384615
11 0.3307692 0.3307692 0.3615385 0.3384615 0.3153846 0.3230769 0.3384615
12 0.3307692 0.3384615 0.3461538 0.3538462 0.3000000 0.3307692 0.3461538
13 0.3230769 0.3384615 0.3538462 0.3461538 0.3153846 0.3384615 0.3538462
14 0.3307692 0.3615385 0.3769231 0.3615385 0.3076923 0.3538462 0.3538462
15 0.3461538 0.3846154 0.3923077 0.3615385 0.3538462 0.3615385 0.3615385
   permut.43 permut.44 permut.45 permut.46 permut.47 permut.48 permut.49
1  0.3076923 0.3230769 0.3230769 0.3076923 0.3230769 0.3230769 0.3230769
2  0.3000000 0.3230769 0.3230769 0.3000000 0.3230769 0.3230769 0.3230769
3  0.3000000 0.3230769 0.3230769 0.2846154 0.3153846 0.3230769 0.3230769
4  0.3000000 0.3230769 0.3230769 0.2846154 0.3076923 0.3230769 0.3230769
5  0.3000000 0.3230769 0.3230769 0.2846154 0.3076923 0.3230769 0.3307692
6  0.3076923 0.3230769 0.3230769 0.2846154 0.3076923 0.3230769 0.3307692
7  0.3153846 0.3230769 0.3230769 0.3000000 0.3076923 0.3076923 0.3307692
8  0.2923077 0.3230769 0.3230769 0.3076923 0.3230769 0.3153846 0.3000000
9  0.3000000 0.3307692 0.3384615 0.3076923 0.3307692 0.3384615 0.3384615
10 0.3076923 0.3384615 0.3384615 0.3230769 0.3153846 0.3461538 0.3230769
11 0.3230769 0.3538462 0.3538462 0.3307692 0.3230769 0.3538462 0.3230769
12 0.3307692 0.3538462 0.3538462 0.3230769 0.3461538 0.3692308 0.3307692
13 0.3384615 0.3461538 0.3615385 0.3384615 0.3692308 0.3769231 0.3461538
14 0.3538462 0.3615385 0.3615385 0.3692308 0.3769231 0.3769231 0.3538462
15 0.3538462 0.3923077 0.4000000 0.3923077 0.3923077 0.3846154 0.3615385
   permut.50 permut.51 permut.52 permut.53 permut.54 permut.55 permut.56
1  0.3230769 0.3076923 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3153846 0.2923077 0.3076923 0.3230769 0.3230769 0.3230769 0.3230769
3  0.3153846 0.2923077 0.3076923 0.3230769 0.3230769 0.3230769 0.3230769
4  0.3153846 0.2923077 0.3153846 0.3153846 0.3230769 0.3230769 0.3230769
5  0.3000000 0.2923077 0.3230769 0.3153846 0.3230769 0.3230769 0.3230769
6  0.3000000 0.3076923 0.3230769 0.3076923 0.3307692 0.3076923 0.3230769
7  0.3000000 0.3076923 0.3307692 0.3230769 0.3307692 0.3153846 0.3307692
8  0.3000000 0.3153846 0.3307692 0.3307692 0.3307692 0.3076923 0.3384615
9  0.3153846 0.3307692 0.3307692 0.3307692 0.3307692 0.3000000 0.3461538
10 0.3230769 0.3384615 0.3461538 0.3307692 0.3384615 0.3000000 0.3461538
11 0.3153846 0.3384615 0.3307692 0.3384615 0.3461538 0.3000000 0.3384615
12 0.3307692 0.3461538 0.3307692 0.3307692 0.3384615 0.3000000 0.3461538
13 0.3384615 0.3615385 0.3384615 0.3615385 0.3692308 0.3076923 0.3538462
14 0.3692308 0.3538462 0.3769231 0.3846154 0.3692308 0.3307692 0.3538462
15 0.3461538 0.3923077 0.3846154 0.4153846 0.3692308 0.3538462 0.3923077
   permut.57 permut.58 permut.59 permut.60 permut.61 permut.62 permut.63
1  0.3230769 0.3230769 0.2923077 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3076923 0.2923077 0.3230769 0.3230769 0.3230769 0.3230769
3  0.3230769 0.2923077 0.2923077 0.3230769 0.3230769 0.3153846 0.3230769
4  0.3230769 0.2846154 0.2846154 0.3230769 0.3230769 0.3153846 0.3153846
5  0.3153846 0.2846154 0.2923077 0.3230769 0.3076923 0.3153846 0.3076923
6  0.3153846 0.2923077 0.2769231 0.3230769 0.3076923 0.3153846 0.3076923
7  0.3153846 0.2923077 0.2846154 0.3230769 0.3076923 0.3307692 0.3076923
8  0.3230769 0.3000000 0.2923077 0.3307692 0.3076923 0.3461538 0.3076923
9  0.3230769 0.3076923 0.3153846 0.3307692 0.3153846 0.3461538 0.3153846
10 0.3230769 0.3000000 0.3230769 0.3307692 0.3307692 0.3461538 0.3230769
11 0.3307692 0.3000000 0.3230769 0.3307692 0.3384615 0.3538462 0.3384615
12 0.3076923 0.3076923 0.3461538 0.3615385 0.3461538 0.3615385 0.3461538
13 0.3076923 0.3307692 0.3384615 0.3769231 0.3384615 0.3692308 0.3538462
14 0.3076923 0.3615385 0.3307692 0.3615385 0.3153846 0.3846154 0.3769231
15 0.3076923 0.3846154 0.3692308 0.3923077 0.3692308 0.4076923 0.3846154
   permut.64 permut.65 permut.66 permut.67 permut.68 permut.69 permut.70
1  0.3153846 0.3230769 0.3230769 0.3076923 0.3230769 0.3153846 0.3153846
2  0.3076923 0.3230769 0.3230769 0.2923077 0.3230769 0.3000000 0.2846154
3  0.2769231 0.3153846 0.3230769 0.2923077 0.3230769 0.3000000 0.2769231
4  0.2769231 0.3153846 0.3153846 0.2846154 0.3230769 0.3000000 0.2846154
5  0.2846154 0.3076923 0.3153846 0.2846154 0.3230769 0.3076923 0.2846154
6  0.2846154 0.3000000 0.3230769 0.2846154 0.3230769 0.3000000 0.2846154
7  0.2923077 0.3153846 0.3230769 0.2923077 0.3230769 0.3076923 0.2923077
8  0.3076923 0.3076923 0.3307692 0.3000000 0.3230769 0.3000000 0.2769231
9  0.3307692 0.3000000 0.3384615 0.3000000 0.3230769 0.3000000 0.2769231
10 0.3307692 0.3076923 0.3230769 0.3230769 0.3307692 0.3076923 0.2769231
11 0.3153846 0.3153846 0.3384615 0.3307692 0.3384615 0.3230769 0.2692308
12 0.3307692 0.3230769 0.3384615 0.3307692 0.3461538 0.3384615 0.3000000
13 0.3538462 0.3384615 0.3538462 0.3461538 0.3692308 0.3461538 0.3076923
14 0.3538462 0.3538462 0.3692308 0.3692308 0.3615385 0.3384615 0.3230769
15 0.3692308 0.3846154 0.3769231 0.3615385 0.4153846 0.3692308 0.3615385
   permut.71 permut.72 permut.73 permut.74 permut.75 permut.76 permut.77
1  0.3230769 0.3230769 0.3153846 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3230769 0.3000000 0.3230769 0.3153846 0.3230769 0.3153846
3  0.3153846 0.3076923 0.3000000 0.3230769 0.3076923 0.3230769 0.3076923
4  0.3153846 0.2923077 0.3076923 0.3153846 0.3076923 0.3153846 0.3153846
5  0.3153846 0.3000000 0.3076923 0.3307692 0.3000000 0.3230769 0.3230769
6  0.3153846 0.2923077 0.3153846 0.3461538 0.3000000 0.3230769 0.3230769
7  0.3230769 0.3000000 0.3153846 0.3461538 0.3000000 0.3307692 0.3307692
8  0.3307692 0.3076923 0.3153846 0.3384615 0.3000000 0.3307692 0.3384615
9  0.3307692 0.3076923 0.3153846 0.3538462 0.3000000 0.3307692 0.3153846
10 0.3384615 0.3076923 0.3461538 0.3538462 0.3000000 0.3461538 0.3230769
11 0.3538462 0.3076923 0.3461538 0.3615385 0.3230769 0.3615385 0.3230769
12 0.3538462 0.3307692 0.3461538 0.3538462 0.3307692 0.3615385 0.3230769
13 0.3615385 0.3384615 0.3384615 0.3615385 0.3461538 0.3769231 0.3538462
14 0.3923077 0.3461538 0.3307692 0.3538462 0.3692308 0.3923077 0.3692308
15 0.4153846 0.3615385 0.3461538 0.3692308 0.3846154 0.3923077 0.3692308
   permut.78 permut.79 permut.80 permut.81 permut.82 permut.83 permut.84
1  0.3230769 0.3230769 0.3230769 0.3153846 0.3230769 0.3230769 0.3153846
2  0.3230769 0.3230769 0.3230769 0.3000000 0.3230769 0.3230769 0.3153846
3  0.3230769 0.3230769 0.3230769 0.3000000 0.3230769 0.3230769 0.2923077
4  0.3230769 0.3230769 0.3230769 0.3000000 0.3230769 0.3307692 0.3000000
5  0.3230769 0.3230769 0.3230769 0.3000000 0.3230769 0.3307692 0.3000000
6  0.3230769 0.3153846 0.3230769 0.3076923 0.3230769 0.3307692 0.2923077
7  0.3230769 0.3153846 0.3230769 0.3076923 0.3230769 0.3384615 0.2923077
8  0.3230769 0.3153846 0.3230769 0.3230769 0.3230769 0.3538462 0.3076923
9  0.3230769 0.3153846 0.3230769 0.3384615 0.3230769 0.3000000 0.3076923
10 0.3153846 0.3230769 0.3230769 0.3461538 0.3384615 0.2923077 0.3307692
11 0.3153846 0.3307692 0.3538462 0.3384615 0.3461538 0.3153846 0.3461538
12 0.3153846 0.3461538 0.3538462 0.3307692 0.3461538 0.2923077 0.3384615
13 0.3230769 0.3692308 0.3769231 0.3230769 0.3615385 0.3076923 0.3461538
14 0.3461538 0.3692308 0.4000000 0.3615385 0.3692308 0.3230769 0.3692308
15 0.3923077 0.3846154 0.4153846 0.4076923 0.4076923 0.3384615 0.3692308
   permut.85 permut.86 permut.87 permut.88 permut.89 permut.90 permut.91
1  0.3230769 0.3230769 0.3076923 0.3153846 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3230769 0.3076923 0.3076923 0.3230769 0.3230769 0.3230769
3  0.3230769 0.3230769 0.3076923 0.2923077 0.3230769 0.3230769 0.3230769
4  0.3230769 0.3230769 0.3076923 0.2923077 0.3230769 0.3230769 0.3230769
5  0.3230769 0.3230769 0.3076923 0.2923077 0.3230769 0.3230769 0.3230769
6  0.3230769 0.3230769 0.3076923 0.3000000 0.3230769 0.3230769 0.3230769
7  0.3230769 0.3307692 0.3076923 0.3000000 0.3230769 0.3230769 0.3307692
8  0.3230769 0.3307692 0.3076923 0.3076923 0.3230769 0.3230769 0.3307692
9  0.3230769 0.3384615 0.3307692 0.3153846 0.3230769 0.3307692 0.3384615
10 0.3230769 0.3461538 0.3461538 0.3230769 0.3307692 0.3461538 0.3538462
11 0.3384615 0.3692308 0.3384615 0.3230769 0.3307692 0.3538462 0.3692308
12 0.3461538 0.3615385 0.3538462 0.3461538 0.3461538 0.3538462 0.3769231
13 0.3615385 0.3769231 0.3615385 0.3461538 0.3461538 0.3846154 0.3769231
14 0.3846154 0.4000000 0.3538462 0.3615385 0.3538462 0.3923077 0.3923077
15 0.4076923 0.4230769 0.3692308 0.3846154 0.3769231 0.4000000 0.4230769
   permut.92 permut.93 permut.94 permut.95 permut.96 permut.97 permut.98
1  0.3230769 0.3153846 0.3230769 0.3153846 0.3153846 0.3153846 0.3230769
2  0.3230769 0.2923077 0.3230769 0.3153846 0.3076923 0.3153846 0.3153846
3  0.3230769 0.2923077 0.3230769 0.3153846 0.2769231 0.3153846 0.3076923
4  0.3230769 0.2923077 0.3230769 0.3153846 0.2769231 0.3153846 0.3076923
5  0.3230769 0.2923077 0.3230769 0.3153846 0.2846154 0.3000000 0.3076923
6  0.3307692 0.3000000 0.3230769 0.3153846 0.2846154 0.3076923 0.3230769
7  0.3307692 0.3000000 0.3230769 0.3153846 0.2846154 0.3000000 0.3307692
8  0.3538462 0.3153846 0.3230769 0.3307692 0.2923077 0.3076923 0.3307692
9  0.3461538 0.3230769 0.3230769 0.3307692 0.3076923 0.3153846 0.3384615
10 0.3538462 0.3307692 0.3384615 0.3307692 0.3153846 0.3230769 0.3538462
11 0.3538462 0.3230769 0.3692308 0.3384615 0.3153846 0.3153846 0.3538462
12 0.3846154 0.3153846 0.3769231 0.3615385 0.3153846 0.3230769 0.3538462
13 0.3923077 0.3538462 0.3769231 0.3769231 0.3384615 0.3461538 0.3615385
14 0.3769231 0.3538462 0.3769231 0.3846154 0.3538462 0.3153846 0.3615385
15 0.3846154 0.3692308 0.4000000 0.4076923 0.3692308 0.3538462 0.4076923
   permut.99 permut.100  err.mean      err.sd    err.sterr
1  0.3153846  0.3153846 0.3196154 0.005824008 0.0005824008
2  0.3076923  0.3076923 0.3152308 0.011095081 0.0011095081
3  0.3000000  0.3076923 0.3118462 0.014398049 0.0014398049
4  0.3000000  0.3076923 0.3103077 0.015509208 0.0015509208
5  0.3000000  0.3000000 0.3095385 0.016073170 0.0016073170
6  0.3000000  0.3000000 0.3100000 0.016490915 0.0016490915
7  0.3076923  0.3000000 0.3129231 0.015611382 0.0015611382
8  0.3000000  0.2923077 0.3156923 0.017422180 0.0017422180
9  0.3000000  0.3000000 0.3196154 0.017844352 0.0017844352
10 0.3230769  0.3000000 0.3259231 0.019177237 0.0019177237
11 0.3230769  0.3153846 0.3324615 0.021273203 0.0021273203
12 0.3307692  0.3230769 0.3388462 0.023382463 0.0023382463
13 0.3461538  0.3384615 0.3489231 0.022473861 0.0022473861
14 0.3615385  0.3615385 0.3597692 0.024566166 0.0024566166
15 0.3769231  0.3692308 0.3776154 0.026783298 0.0026783298

$permut.pc.stepwise.lda$best.p
[1] 8

$permut.pc.stepwise.lda$best.error
[1] 0.2923077

$permut.pc.stepwise.lda$best.pda
$permut.pc.stepwise.lda$best.pda$class
  [1] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL
 [19] CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [37] CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL
 [55] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [73] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [91] CTL CTL CTL CTL CTL CTL MET MET MET CTL MET CTL CTL CTL CTL CTL CTL CTL
[109] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL
[127] CTL CTL CTL CTL
Levels: CTL MET

$permut.pc.stepwise.lda$best.pda$posterior
              CTL       MET
YAL012W 0.8287718 0.1712282
YAL038W 0.7730989 0.2269011
YAR064W 0.6535375 0.3464625
YAR071W 0.5596278 0.4403722
YBL005W 0.5809709 0.4190291
YBL030C 0.7182205 0.2817795
YBR006W 0.6403055 0.3596945
YBR018C 0.8049766 0.1950234
YBR020W 0.6878509 0.3121491
YBR093C 0.6474001 0.3525999
YBR115C 0.7219071 0.2780929
YBR184W 0.8240522 0.1759478
YBR213W 0.6621774 0.3378226
YBR296C 0.3373636 0.6626364
YCL018W 0.7511136 0.2488864
YDL131W 0.5107631 0.4892369
YDL182W 0.5156171 0.4843829
YDL205C 0.7816666 0.2183334
YDL208W 0.7958883 0.2041117
YDL210W 0.6092891 0.3907109
YDR011W 0.6451537 0.3548463
YDR044W 0.4509880 0.5490120
YDR234W 0.6770193 0.3229807
YDR253C 0.7155629 0.2844371
YDR254W 0.6920814 0.3079186
YDR285W 0.6186463 0.3813537
YDR406W 0.5958713 0.4041287
YDR481C 0.6571641 0.3428359
YDR502C 0.8660067 0.1339933
YEL021W 0.6913014 0.3086986
YEL039C 0.7390738 0.2609262
YER026C 0.7396032 0.2603968
YER086W 0.6800231 0.3199769
YER091C 0.8451876 0.1548124
YER092W 0.7779452 0.2220548
YER125W 0.8867301 0.1132699
YER179W 0.7549930 0.2450070
YFR030W 0.8000548 0.1999452
YFR049W 0.8059870 0.1940130
YGL009C 0.7188822 0.2811178
YGL073W 0.2253655 0.7746345
YGL213C 0.5121418 0.4878582
YGR019W 0.6485670 0.3514330
YGR044C 0.6648520 0.3351480
YGR055W 0.8496347 0.1503653
YGR088W 0.6893045 0.3106955
YGR121C 0.6291144 0.3708856
YGR154C 0.6938345 0.3061655
YGR155W 0.7439547 0.2560453
YGR157W 0.8622613 0.1377387
YGR233C 0.6024172 0.3975828
YGR281W 0.4383188 0.5616812
YHL022C 0.7154790 0.2845210
YHL036W 0.7235931 0.2764069
YHL038C 0.8062239 0.1937761
YHR007C 0.6675744 0.3324256
YHR008C 0.6612657 0.3387343
YHR014W 0.5724050 0.4275950
YHR037W 0.5789577 0.4210423
YHR136C 0.6797304 0.3202696
YHR153C 0.7266475 0.2733525
YIL015W 0.7695629 0.2304371
YIL046W 0.5893604 0.4106396
YIL047C 0.5893604 0.4106396
YIL072W 0.5893342 0.4106658
YIL074C 0.8192072 0.1807928
YIR017C 0.8965702 0.1034298
YIR018W 0.8614189 0.1385811
YIR034C 0.6432278 0.3567722
YJL106W 0.6900418 0.3099582
YJL117W 0.6413611 0.3586389
YJL153C 0.7726928 0.2273072
YJL186W 0.7507899 0.2492101
YJL187C 0.7584278 0.2415722
YJL219W 0.5797954 0.4202046
YJR010W 0.8756218 0.1243782
YJR048W 0.6573144 0.3426856
YJR073C 0.5285016 0.4714984
YJR094C 0.5416714 0.4583286
YJR137C 0.7122877 0.2877123
YJR152W 0.6035697 0.3964303
YKL001C 0.6659229 0.3340771
YKL182W 0.5628738 0.4371262
YKL216W 0.5287655 0.4712345
YKR039W 0.4172832 0.5827168
YKR068C 0.6424125 0.3575875
YKR069W 0.7953028 0.2046972
YLR081W 0.6493362 0.3506638
YLR142W 0.7431927 0.2568073
YLR180W 0.8401778 0.1598222
YLR263W 0.7652583 0.2347417
YLR303W 0.7405451 0.2594549
YLR329W 0.5139005 0.4860995
YLR420W 0.6784415 0.3215585
YLR438W 0.6959735 0.3040265
YML051W 0.7286823 0.2713177
YML054C 0.4845605 0.5154395
YML075C 0.4302726 0.5697274
YML123C 0.2145530 0.7854470
YMR061W 0.6296107 0.3703893
YMR108W 0.4889787 0.5110213
YMR133W 0.7818926 0.2181074
YMR301C 0.8385851 0.1614149
YNL052W 0.7849346 0.2150654
YNL104C 0.7002034 0.2997966
YNL142W 0.6022237 0.3977763
YNL210W 0.7438145 0.2561855
YNL241C 0.7881398 0.2118602
YNL259C 0.6182118 0.3817882
YNL260C 0.8096913 0.1903087
YNL277W 0.8549179 0.1450821
YNR001C 0.7376354 0.2623646
YNR050C 0.7064746 0.2935254
YOL006C 0.7391851 0.2608149
YOR065W 0.7571600 0.2428400
YOR120W 0.8020290 0.1979710
YOR136W 0.7948362 0.2051638
YOR153W 0.6838050 0.3161950
YOR284W 0.6206448 0.3793552
YOR328W 0.7408855 0.2591145
YOR351C 0.7649073 0.2350927
YOR367W 0.7756902 0.2243098
YOR375C 0.5565681 0.4434319
YPL111W 0.6985257 0.3014743
YPL231W 0.4484302 0.5515698
YPL250C 0.7680737 0.2319263
YPR065W 0.7975197 0.2024803
YPR138C 0.6548020 0.3451980
YPR145W 0.6960685 0.3039315
YPR167C 0.5832485 0.4167515

$permut.pc.stepwise.lda$best.pda$call
lda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$permut.pc.stepwise.lda$best.pda$training.label
  [1] CTL MET MET CTL CTL CTL CTL CTL CTL MET CTL CTL CTL MET MET MET CTL CTL
 [19] CTL CTL CTL MET CTL CTL CTL CTL CTL MET MET CTL MET MET CTL MET CTL CTL
 [37] CTL MET CTL MET CTL CTL CTL CTL CTL MET CTL CTL CTL CTL MET MET CTL CTL
 [55] MET MET CTL CTL CTL MET MET CTL CTL CTL MET MET MET CTL MET CTL CTL CTL
 [73] MET CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET
 [91] CTL CTL CTL MET CTL MET MET MET MET CTL MET CTL MET MET MET CTL CTL MET
[109] CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET MET CTL CTL CTL CTL CTL
[127] CTL CTL CTL CTL
Levels: CTL MET

$permut.pc.stepwise.lda$best.pda$pda.method
[1] "lda"

$permut.pc.stepwise.lda$best.pda$loo
[1] TRUE

$permut.pc.stepwise.lda$best.pda$validation
[1] "LOO"

$permut.pc.stepwise.lda$best.pda$confusion
      true
object CTL MET
   CTL  85  35
   MET   3   7
attr(,"error")
[1] 0.2923077



$stepwise.qda
$stepwise.qda$max.p
[1] 15

$stepwise.qda$errors
 [1] 0.08461538 0.03846154 0.04615385 0.03846154 0.03846154 0.04615385
 [7] 0.03846154 0.04615385 0.04615385 0.03846154 0.03846154 0.01538462
[13] 0.03846154 0.03076923 0.09230769

$stepwise.qda$confusion.table
   step              error added.var added.var.name CTL.CTL CTL.MET MET.CTL
1     1 0.0846153846153846        10        Met4p.1      83       5       6
2     2 0.0384615384615384        13       Met31p.1      84       4       1
3     3 0.0461538461538461         3        Pho4p.3      83       5       1
4     4 0.0384615384615384         1        Pho4p.1      84       4       1
5     5 0.0384615384615384         2        Pho4p.2      84       4       1
6     6 0.0461538461538461        14       Met31p.2      83       5       1
7     7 0.0384615384615384         5      Pho4p.g.2      84       4       1
8     8 0.0461538461538461         9      Pho4p.t.3      84       4       2
9     9 0.0461538461538461        15       Met31p.3      85       3       3
10   10 0.0384615384615384         4      Pho4p.g.1      86       2       3
11   11 0.0384615384615384         6      Pho4p.g.3      85       3       2
12   12 0.0153846153846153         8      Pho4p.t.2      87       1       1
13   13 0.0384615384615384        12        Met4p.3      86       2       3
14   14 0.0307692307692308         7      Pho4p.t.1      87       1       3
15   15 0.0923076923076923        11        Met4p.2      85       3       9
   MET.MET
1       36
2       41
3       41
4       41
5       41
6       41
7       41
8       40
9       39
10      39
11      40
12      41
13      39
14      39
15      33

$stepwise.qda$best.pda
$stepwise.qda$best.pda$class
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET MET CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL CTL
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$stepwise.qda$best.pda$posterior
                 CTL          MET
YAL012W 7.202461e-08 9.999999e-01
YAL038W 9.999300e-01 6.997083e-05
YAR064W 1.496146e-02 9.850385e-01
YAR071W 1.000000e+00 1.373320e-09
YBL005W 1.000000e+00 1.500033e-09
YBL030C 9.999999e-01 1.031549e-07
YBR006W 7.688539e-01 2.311461e-01
YBR018C 9.999924e-01 7.600492e-06
YBR020W 9.999997e-01 3.230815e-07
YBR093C 9.999999e-01 5.244238e-08
YBR115C 9.997811e-01 2.189375e-04
YBR184W 8.476618e-01 1.523382e-01
YBR213W 3.662642e-01 6.337358e-01
YBR296C 9.971081e-01 2.891904e-03
YCL018W 9.999417e-01 5.828979e-05
YDL131W 1.000000e+00 1.518676e-10
YDL182W 1.000000e+00 2.455439e-12
YDL205C 1.000000e+00 4.986530e-10
YDL208W 3.517858e-02 9.648214e-01
YDL210W 9.980553e-01 1.944695e-03
YDR011W 9.994488e-01 5.511543e-04
YDR044W 1.000000e+00 3.276413e-16
YDR234W 9.998309e-01 1.690958e-04
YDR253C 1.334734e-06 9.999987e-01
YDR254W 1.062946e-06 9.999989e-01
YDR285W 9.993113e-01 6.886802e-04
YDR406W 1.000000e+00 3.126804e-09
YDR481C 6.380109e-01 3.619891e-01
YDR502C 6.714038e-05 9.999329e-01
YEL021W 9.999998e-01 2.035141e-07
YEL039C 1.000000e+00 3.165585e-09
YER026C 9.999654e-01 3.462551e-05
YER086W 1.000000e+00 3.045688e-09
YER091C 6.270054e-06 9.999937e-01
YER092W 6.270054e-06 9.999937e-01
YER125W 9.267963e-06 9.999907e-01
YER179W 9.999748e-01 2.521930e-05
YFR030W 4.085906e-04 9.995914e-01
YFR049W 2.785494e-02 9.721451e-01
YGL009C 9.999974e-01 2.604234e-06
YGL073W 1.000000e+00 3.607104e-16
YGL213C 1.000000e+00 5.614938e-09
YGR019W 9.999946e-01 5.392780e-06
YGR044C 9.999757e-01 2.429216e-05
YGR055W 2.561080e-01 7.438920e-01
YGR088W 1.000000e+00 8.641576e-09
YGR121C 1.000000e+00 5.974233e-12
YGR154C 1.071941e-05 9.999893e-01
YGR155W 1.533040e-06 9.999985e-01
YGR157W 8.553834e-03 9.914462e-01
YGR233C 7.866686e-01 2.133314e-01
YGR281W 9.044788e-01 9.552124e-02
YHL022C 9.999549e-01 4.507268e-05
YHL036W 1.060124e-05 9.999894e-01
YHL038C 1.060124e-05 9.999894e-01
YHR007C 9.999943e-01 5.672409e-06
YHR008C 9.999990e-01 9.518803e-07
YHR014W 9.984688e-01 1.531152e-03
YHR037W 9.999978e-01 2.201537e-06
YHR136C 5.198324e-01 4.801676e-01
YHR153C 9.821472e-01 1.785280e-02
YIL015W 9.906093e-01 9.390731e-03
YIL046W 2.002810e-01 7.997190e-01
YIL047C 2.002810e-01 7.997190e-01
YIL072W 9.998447e-01 1.553013e-04
YIL074C 3.563335e-03 9.964367e-01
YIR017C 5.220356e-04 9.994780e-01
YIR018W 8.722530e-05 9.999128e-01
YIR034C 1.000000e+00 1.963460e-09
YJL106W 9.999680e-01 3.200889e-05
YJL117W 9.780687e-01 2.193125e-02
YJL153C 9.931258e-01 6.874202e-03
YJL186W 1.527915e-04 9.998472e-01
YJL187C 2.355331e-03 9.976447e-01
YJL219W 1.000000e+00 2.599853e-08
YJR010W 5.210873e-07 9.999995e-01
YJR048W 9.999406e-01 5.941945e-05
YJR073C 9.991740e-01 8.260136e-04
YJR094C 9.999981e-01 1.927865e-06
YJR137C 4.111254e-01 5.888746e-01
YJR152W 9.999432e-01 5.681386e-05
YKL001C 8.869188e-05 9.999113e-01
YKL182W 9.999988e-01 1.244224e-06
YKL216W 1.000000e+00 1.732224e-11
YKR039W 1.000000e+00 1.423793e-14
YKR068C 2.507382e-06 9.999975e-01
YKR069W 1.069615e-05 9.999893e-01
YLR081W 8.570118e-01 1.429882e-01
YLR142W 9.914573e-01 8.542717e-03
YLR180W 3.525602e-01 6.474398e-01
YLR263W 9.998193e-01 1.806619e-04
YLR303W 9.299186e-09 1.000000e+00
YLR329W 9.999999e-01 5.842145e-08
YLR420W 9.999991e-01 9.312866e-07
YLR438W 1.000000e+00 1.584955e-08
YML051W 9.999999e-01 7.298088e-08
YML054C 9.999977e-01 2.317854e-06
YML075C 1.000000e+00 9.692434e-09
YML123C 1.000000e+00 4.883403e-31
YMR061W 5.247954e-06 9.999948e-01
YMR108W 1.000000e+00 6.193906e-13
YMR133W 9.995377e-01 4.623205e-04
YMR301C 1.081901e-05 9.999892e-01
YNL052W 9.999821e-01 1.787254e-05
YNL104C 9.953522e-01 4.647799e-03
YNL142W 1.000000e+00 9.367595e-11
YNL210W 9.993442e-01 6.558137e-04
YNL241C 9.999999e-01 8.146160e-08
YNL259C 4.911031e-08 1.000000e+00
YNL260C 1.219925e-09 1.000000e+00
YNL277W 5.683917e-08 9.999999e-01
YNR001C 9.999963e-01 3.742547e-06
YNR050C 9.999823e-01 1.769364e-05
YOL006C 1.000000e+00 1.363555e-08
YOR065W 9.980469e-01 1.953081e-03
YOR120W 9.922830e-01 7.717024e-03
YOR136W 9.196310e-03 9.908037e-01
YOR153W 9.999992e-01 8.251608e-07
YOR284W 9.020458e-03 9.909795e-01
YOR328W 1.000000e+00 8.150705e-09
YOR351C 9.999600e-01 3.996698e-05
YOR367W 1.308411e-03 9.986916e-01
YOR375C 9.999914e-01 8.594168e-06
YPL111W 9.999985e-01 1.514347e-06
YPL231W 9.634432e-01 3.655680e-02
YPL250C 6.297260e-02 9.370274e-01
YPR065W 8.534519e-01 1.465481e-01
YPR138C 1.000000e+00 2.735356e-09
YPR145W 9.999999e-01 1.084195e-07
YPR167C 1.324029e-02 9.867597e-01

$stepwise.qda$best.pda$call
qda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$stepwise.qda$best.pda$training.names
  [1] "YAL012W" "YAL038W" "YAR064W" "YAR071W" "YBL005W" "YBL030C" "YBR006W"
  [8] "YBR018C" "YBR020W" "YBR093C" "YBR115C" "YBR184W" "YBR213W" "YBR296C"
 [15] "YCL018W" "YDL131W" "YDL182W" "YDL205C" "YDL208W" "YDL210W" "YDR011W"
 [22] "YDR044W" "YDR234W" "YDR253C" "YDR254W" "YDR285W" "YDR406W" "YDR481C"
 [29] "YDR502C" "YEL021W" "YEL039C" "YER026C" "YER086W" "YER091C" "YER092W"
 [36] "YER125W" "YER179W" "YFR030W" "YFR049W" "YGL009C" "YGL073W" "YGL213C"
 [43] "YGR019W" "YGR044C" "YGR055W" "YGR088W" "YGR121C" "YGR154C" "YGR155W"
 [50] "YGR157W" "YGR233C" "YGR281W" "YHL022C" "YHL036W" "YHL038C" "YHR007C"
 [57] "YHR008C" "YHR014W" "YHR037W" "YHR136C" "YHR153C" "YIL015W" "YIL046W"
 [64] "YIL047C" "YIL072W" "YIL074C" "YIR017C" "YIR018W" "YIR034C" "YJL106W"
 [71] "YJL117W" "YJL153C" "YJL186W" "YJL187C" "YJL219W" "YJR010W" "YJR048W"
 [78] "YJR073C" "YJR094C" "YJR137C" "YJR152W" "YKL001C" "YKL182W" "YKL216W"
 [85] "YKR039W" "YKR068C" "YKR069W" "YLR081W" "YLR142W" "YLR180W" "YLR263W"
 [92] "YLR303W" "YLR329W" "YLR420W" "YLR438W" "YML051W" "YML054C" "YML075C"
 [99] "YML123C" "YMR061W" "YMR108W" "YMR133W" "YMR301C" "YNL052W" "YNL104C"
[106] "YNL142W" "YNL210W" "YNL241C" "YNL259C" "YNL260C" "YNL277W" "YNR001C"
[113] "YNR050C" "YOL006C" "YOR065W" "YOR120W" "YOR136W" "YOR153W" "YOR284W"
[120] "YOR328W" "YOR351C" "YOR367W" "YOR375C" "YPL111W" "YPL231W" "YPL250C"
[127] "YPR065W" "YPR138C" "YPR145W" "YPR167C"

$stepwise.qda$best.pda$training.label
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL MET
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$stepwise.qda$best.pda$pda.method
[1] "qda"

$stepwise.qda$best.pda$loo
[1] TRUE

$stepwise.qda$best.pda$validation
[1] "LOO"

$stepwise.qda$best.pda$confusion
      true
object CTL MET
   CTL  87   1
   MET   1  41
attr(,"error")
[1] 0.01538462


$stepwise.qda$best.p
[1] 12

$stepwise.qda$best.vars
 [1] 10 13  3  1  2 14  5  9 15  4  6  8

$stepwise.qda$best.var.names
 [1] "Met4p.1"   "Met31p.1"  "Pho4p.3"   "Pho4p.1"   "Pho4p.2"   "Met31p.2" 
 [7] "Pho4p.g.2" "Pho4p.t.3" "Met31p.3"  "Pho4p.g.1" "Pho4p.g.3" "Pho4p.t.2"

$stepwise.qda$best.error
[1] 0.01538462

$stepwise.qda$pc.transform
[1] FALSE

$stepwise.qda$var.order
 [1] 10 13  3  1  2 14  5  9 15  4  6  8 12  7 11


$pc.stepwise.qda
$pc.stepwise.qda$max.p
[1] 15

$pc.stepwise.qda$errors
 [1] 0.16153846 0.11538462 0.06153846 0.05384615 0.06153846 0.04615385
 [7] 0.06153846 0.03076923 0.03076923 0.03076923 0.03846154 0.06923077
[13] 0.06923077 0.03846154 0.09230769

$pc.stepwise.qda$confusion.table
   step              error added.var added.var.name CTL.CTL CTL.MET MET.CTL
1     1  0.161538461538462         2         Comp.2      83       5      16
2     2  0.115384615384615         8         Comp.8      81       7       8
3     3 0.0615384615384615         5         Comp.5      85       3       5
4     4 0.0538461538461539         1         Comp.1      84       4       3
5     5 0.0615384615384615         6         Comp.6      84       4       4
6     6 0.0461538461538461         4         Comp.4      85       3       3
7     7 0.0615384615384615        10        Comp.10      83       5       3
8     8 0.0307692307692308        11        Comp.11      86       2       2
9     9 0.0307692307692308        14        Comp.14      86       2       2
10   10 0.0307692307692308        12        Comp.12      86       2       2
11   11 0.0384615384615384         3         Comp.3      85       3       2
12   12 0.0692307692307692         7         Comp.7      84       4       5
13   13 0.0692307692307692         9         Comp.9      84       4       5
14   14 0.0384615384615384        13        Comp.13      86       2       3
15   15 0.0923076923076923        15        Comp.15      85       3       9
   MET.MET
1       26
2       34
3       37
4       39
5       38
6       39
7       39
8       40
9       40
10      40
11      40
12      37
13      37
14      39
15      33

$pc.stepwise.qda$best.pda
$pc.stepwise.qda$best.pda$class
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL MET CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL CTL
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$pc.stepwise.qda$best.pda$posterior
                 CTL          MET
YAL012W 2.342925e-07 9.999998e-01
YAL038W 9.999997e-01 3.244409e-07
YAR064W 1.078704e-01 8.921296e-01
YAR071W 9.999986e-01 1.430510e-06
YBL005W 9.999990e-01 9.501997e-07
YBL030C 9.999974e-01 2.552386e-06
YBR006W 6.009372e-01 3.990628e-01
YBR018C 9.999499e-01 5.009928e-05
YBR020W 9.999868e-01 1.323975e-05
YBR093C 9.999873e-01 1.268732e-05
YBR115C 9.867785e-01 1.322150e-02
YBR184W 4.415401e-02 9.558460e-01
YBR213W 5.669622e-01 4.330378e-01
YBR296C 1.000000e+00 2.092329e-08
YCL018W 9.999961e-01 3.880213e-06
YDL131W 9.999993e-01 7.397344e-07
YDL182W 9.999999e-01 5.602898e-08
YDL205C 9.999999e-01 5.537229e-08
YDL208W 4.645928e-03 9.953541e-01
YDL210W 9.835973e-01 1.640274e-02
YDR011W 9.931856e-01 6.814443e-03
YDR044W 9.999996e-01 4.355756e-07
YDR234W 9.999700e-01 2.998877e-05
YDR253C 1.906138e-04 9.998094e-01
YDR254W 1.768015e-04 9.998232e-01
YDR285W 9.981688e-01 1.831248e-03
YDR406W 9.999999e-01 1.173027e-07
YDR481C 7.097334e-01 2.902666e-01
YDR502C 6.080995e-05 9.999392e-01
YEL021W 9.999957e-01 4.267650e-06
YEL039C 1.000000e+00 2.846598e-09
YER026C 9.999485e-01 5.145274e-05
YER086W 9.999996e-01 4.004738e-07
YER091C 7.336848e-08 9.999999e-01
YER092W 7.336848e-08 9.999999e-01
YER125W 7.733918e-07 9.999992e-01
YER179W 9.999377e-01 6.231413e-05
YFR030W 7.892019e-04 9.992108e-01
YFR049W 4.751970e-03 9.952480e-01
YGL009C 9.999955e-01 4.482185e-06
YGL073W 1.000000e+00 9.434207e-13
YGL213C 9.999999e-01 5.521228e-08
YGR019W 9.999811e-01 1.892164e-05
YGR044C 7.774850e-01 2.225150e-01
YGR055W 2.127034e-01 7.872966e-01
YGR088W 1.000000e+00 3.377181e-08
YGR121C 1.000000e+00 4.776086e-10
YGR154C 2.740722e-05 9.999726e-01
YGR155W 2.875106e-05 9.999712e-01
YGR157W 9.983458e-01 1.654226e-03
YGR233C 9.905691e-01 9.430857e-03
YGR281W 5.674916e-03 9.943251e-01
YHL022C 9.999815e-01 1.847982e-05
YHL036W 9.456452e-05 9.999054e-01
YHL038C 9.456452e-05 9.999054e-01
YHR007C 9.999947e-01 5.317752e-06
YHR008C 9.999983e-01 1.689204e-06
YHR014W 9.996355e-01 3.645466e-04
YHR037W 9.999897e-01 1.030114e-05
YHR136C 8.856593e-01 1.143407e-01
YHR153C 9.991469e-01 8.531248e-04
YIL015W 9.984930e-01 1.506973e-03
YIL046W 7.196728e-03 9.928033e-01
YIL047C 7.196728e-03 9.928033e-01
YIL072W 9.859351e-01 1.406494e-02
YIL074C 1.981885e-10 1.000000e+00
YIR017C 1.397126e-03 9.986029e-01
YIR018W 1.453448e-03 9.985466e-01
YIR034C 9.999995e-01 5.296289e-07
YJL106W 9.999769e-01 2.307169e-05
YJL117W 9.001830e-01 9.981698e-02
YJL153C 9.968922e-01 3.107843e-03
YJL186W 3.281904e-04 9.996718e-01
YJL187C 2.158864e-04 9.997841e-01
YJL219W 9.999983e-01 1.728100e-06
YJR010W 2.600808e-03 9.973992e-01
YJR048W 9.999202e-01 7.980836e-05
YJR073C 9.997993e-01 2.006663e-04
YJR094C 9.999993e-01 7.222219e-07
YJR137C 9.948477e-03 9.900515e-01
YJR152W 9.999658e-01 3.418720e-05
YKL001C 1.614719e-04 9.998385e-01
YKL182W 9.999333e-01 6.666691e-05
YKL216W 9.999999e-01 5.521732e-08
YKR039W 1.000000e+00 3.295207e-12
YKR068C 8.093684e-03 9.919063e-01
YKR069W 1.285185e-02 9.871481e-01
YLR081W 9.489996e-01 5.100038e-02
YLR142W 9.926419e-01 7.358078e-03
YLR180W 6.041263e-02 9.395874e-01
YLR263W 9.998424e-01 1.576341e-04
YLR303W 3.890829e-10 1.000000e+00
YLR329W 9.999993e-01 6.629985e-07
YLR420W 9.999929e-01 7.089678e-06
YLR438W 9.999985e-01 1.525615e-06
YML051W 9.999999e-01 7.938506e-08
YML054C 9.982911e-01 1.708923e-03
YML075C 9.999857e-01 1.430426e-05
YML123C 1.000000e+00 1.075048e-21
YMR061W 3.363072e-03 9.966369e-01
YMR108W 1.000000e+00 1.104331e-11
YMR133W 9.995875e-01 4.124857e-04
YMR301C 1.207640e-03 9.987924e-01
YNL052W 9.999963e-01 3.709054e-06
YNL104C 9.654370e-01 3.456296e-02
YNL142W 1.000000e+00 1.712775e-10
YNL210W 9.998351e-01 1.648827e-04
YNL241C 1.000000e+00 7.278833e-11
YNL259C 1.672372e-03 9.983276e-01
YNL260C 6.264947e-02 9.373505e-01
YNL277W 5.296828e-12 1.000000e+00
YNR001C 9.999696e-01 3.040309e-05
YNR050C 9.866783e-01 1.332170e-02
YOL006C 1.000000e+00 4.116982e-08
YOR065W 9.837465e-01 1.625349e-02
YOR120W 9.237723e-01 7.622770e-02
YOR136W 1.700798e-03 9.982992e-01
YOR153W 1.000000e+00 4.100920e-08
YOR284W 6.984320e-03 9.930157e-01
YOR328W 9.999999e-01 5.708254e-08
YOR351C 9.996854e-01 3.146214e-04
YOR367W 4.084699e-06 9.999959e-01
YOR375C 9.957497e-01 4.250302e-03
YPL111W 9.999992e-01 7.984299e-07
YPL231W 9.698646e-01 3.013540e-02
YPL250C 1.696059e-03 9.983039e-01
YPR065W 6.336741e-01 3.663259e-01
YPR138C 1.000000e+00 6.954426e-10
YPR145W 9.997038e-01 2.962390e-04
YPR167C 8.340597e-02 9.165940e-01

$pc.stepwise.qda$best.pda$call
qda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$pc.stepwise.qda$best.pda$training.names
  [1] "YAL012W" "YAL038W" "YAR064W" "YAR071W" "YBL005W" "YBL030C" "YBR006W"
  [8] "YBR018C" "YBR020W" "YBR093C" "YBR115C" "YBR184W" "YBR213W" "YBR296C"
 [15] "YCL018W" "YDL131W" "YDL182W" "YDL205C" "YDL208W" "YDL210W" "YDR011W"
 [22] "YDR044W" "YDR234W" "YDR253C" "YDR254W" "YDR285W" "YDR406W" "YDR481C"
 [29] "YDR502C" "YEL021W" "YEL039C" "YER026C" "YER086W" "YER091C" "YER092W"
 [36] "YER125W" "YER179W" "YFR030W" "YFR049W" "YGL009C" "YGL073W" "YGL213C"
 [43] "YGR019W" "YGR044C" "YGR055W" "YGR088W" "YGR121C" "YGR154C" "YGR155W"
 [50] "YGR157W" "YGR233C" "YGR281W" "YHL022C" "YHL036W" "YHL038C" "YHR007C"
 [57] "YHR008C" "YHR014W" "YHR037W" "YHR136C" "YHR153C" "YIL015W" "YIL046W"
 [64] "YIL047C" "YIL072W" "YIL074C" "YIR017C" "YIR018W" "YIR034C" "YJL106W"
 [71] "YJL117W" "YJL153C" "YJL186W" "YJL187C" "YJL219W" "YJR010W" "YJR048W"
 [78] "YJR073C" "YJR094C" "YJR137C" "YJR152W" "YKL001C" "YKL182W" "YKL216W"
 [85] "YKR039W" "YKR068C" "YKR069W" "YLR081W" "YLR142W" "YLR180W" "YLR263W"
 [92] "YLR303W" "YLR329W" "YLR420W" "YLR438W" "YML051W" "YML054C" "YML075C"
 [99] "YML123C" "YMR061W" "YMR108W" "YMR133W" "YMR301C" "YNL052W" "YNL104C"
[106] "YNL142W" "YNL210W" "YNL241C" "YNL259C" "YNL260C" "YNL277W" "YNR001C"
[113] "YNR050C" "YOL006C" "YOR065W" "YOR120W" "YOR136W" "YOR153W" "YOR284W"
[120] "YOR328W" "YOR351C" "YOR367W" "YOR375C" "YPL111W" "YPL231W" "YPL250C"
[127] "YPR065W" "YPR138C" "YPR145W" "YPR167C"

$pc.stepwise.qda$best.pda$training.label
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL MET
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$pc.stepwise.qda$best.pda$pda.method
[1] "qda"

$pc.stepwise.qda$best.pda$loo
[1] TRUE

$pc.stepwise.qda$best.pda$validation
[1] "LOO"

$pc.stepwise.qda$best.pda$confusion
      true
object CTL MET
   CTL  86   2
   MET   2  40
attr(,"error")
[1] 0.03076923


$pc.stepwise.qda$best.p
[1] 10

$pc.stepwise.qda$best.vars
 [1]  2  8  5  1  6  4 10 11 14 12

$pc.stepwise.qda$best.var.names
 [1] "Comp.2"  "Comp.8"  "Comp.5"  "Comp.1"  "Comp.6"  "Comp.4"  "Comp.10"
 [8] "Comp.11" "Comp.14" "Comp.12"

$pc.stepwise.qda$best.error
[1] 0.03076923

$pc.stepwise.qda$pc.transform
[1] TRUE

$pc.stepwise.qda$var.order
 [1]  2  8  5  1  6  4 10 11 14 12  3  7  9 13 15


$permut.stepwise.qda
$permut.stepwise.qda$confusion.table
        error CTL.CTL CTL.MET MET.CTL MET.MET
1   0.3230769      83       5      37       5
2   0.3230769      88       0      42       0
3   0.3000000      80       8      31      11
4   0.3000000      83       5      34       8
5   0.3230769      88       0      42       0
6   0.3615385      77      11      36       6
7   0.3461538      83       5      40       2
8   0.3230769      88       0      42       0
9   0.2923077      85       3      35       7
10  0.3230769      88       0      42       0
11  0.3000000      81       7      32      10
12  0.3230769      88       0      42       0
13  0.3230769      88       0      42       0
14  0.3230769      88       0      42       0
15  0.3461538      83       5      40       2
16  0.3307692      77      11      32      10
17  0.3384615      78      10      34       8
18  0.3230769      88       0      42       0
19  0.2692308      69      19      16      26
20  0.3307692      87       1      42       0
21  0.3153846      78      10      31      11
22  0.3230769      88       0      42       0
23  0.3384615      83       5      39       3
24  0.3076923      85       3      37       5
25  0.3230769      88       0      42       0
26  0.3384615      86       2      42       0
27  0.3230769      88       0      42       0
28  0.3076923      83       5      35       7
29  0.3230769      88       0      42       0
30  0.3384615      86       2      42       0
31  0.3230769      88       0      42       0
32  0.3076923      72      16      24      18
33  0.3230769      73      15      27      15
34  0.3153846      80       8      33       9
35  0.3230769      88       0      42       0
36  0.3076923      84       4      36       6
37  0.2923077      83       5      33       9
38  0.3230769      83       5      37       5
39  0.3384615      84       4      40       2
40  0.3000000      84       4      35       7
41  0.3230769      88       0      42       0
42  0.3230769      88       0      42       0
43  0.3076923      86       2      38       4
44  0.3076923      81       7      33       9
45  0.2923077      79       9      29      13
46  0.3307692      87       1      42       0
47  0.3230769      79       9      33       9
48  0.2769231      74      14      22      20
49  0.3307692      86       2      41       1
50  0.3230769      79       9      33       9
51  0.3230769      83       5      37       5
52  0.3230769      88       0      42       0
53  0.3230769      88       0      42       0
54  0.3230769      88       0      42       0
55  0.3153846      83       5      36       6
56  0.2846154      73      15      22      20
57  0.2923077      82       6      32      10
58  0.3230769      88       0      42       0
59  0.3000000      86       2      37       5
60  0.3230769      84       4      38       4
61  0.3230769      88       0      42       0
62  0.3230769      84       4      38       4
63  0.3384615      83       5      39       3
64  0.3000000      81       7      32      10
65  0.3538462      80       8      38       4
66  0.3230769      88       0      42       0
67  0.3000000      81       7      32      10
68  0.3307692      80       8      35       7
69  0.3230769      88       0      42       0
70  0.3230769      88       0      42       0
71  0.3000000      77      11      28      14
72  0.3230769      88       0      42       0
73  0.3307692      84       4      39       3
74  0.3153846      78      10      31      11
75  0.3230769      88       0      42       0
76  0.3307692      87       1      42       0
77  0.3307692      73      15      28      14
78  0.2923077      82       6      32      10
79  0.3461538      71      17      28      14
80  0.3230769      88       0      42       0
81  0.3230769      88       0      42       0
82  0.3076923      72      16      24      18
83  0.3076923      83       5      35       7
84  0.2923077      85       3      35       7
85  0.3000000      74      14      25      17
86  0.3230769      87       1      41       1
87  0.3538462      84       4      42       0
88  0.2923077      81       7      31      11
89  0.2923077      82       6      32      10
90  0.3230769      88       0      42       0
91  0.3153846      81       7      34       8
92  0.2923077      83       5      33       9
93  0.3230769      88       0      42       0
94  0.3230769      88       0      42       0
95  0.3230769      88       0      42       0
96  0.3307692      87       1      42       0
97  0.3153846      78      10      31      11
98  0.3230769      88       0      42       0
99  0.3153846      82       6      35       7
100 0.3230769      88       0      42       0

$permut.stepwise.qda$errors
    permut.1  permut.2  permut.3  permut.4  permut.5  permut.6  permut.7
1  0.3230769 0.3230769 0.3307692 0.3230769 0.3230769 0.3615385 0.3461538
2  0.3230769 0.3230769 0.3153846 0.3153846 0.3538462 0.3769231 0.3461538
3  0.3307692 0.3384615 0.3000000 0.3076923 0.3692308 0.3615385 0.3615385
4  0.3615385 0.3307692 0.3000000 0.3000000 0.3692308 0.4076923 0.3692308
5  0.3846154 0.3615385 0.3153846 0.3153846 0.4076923 0.4230769 0.3846154
6  0.4384615 0.3923077 0.3538462 0.3538462 0.3846154 0.4230769 0.4307692
7  0.4384615 0.4307692 0.3461538 0.4076923 0.3846154 0.4307692 0.4384615
8  0.4615385 0.4307692 0.3692308 0.3692308 0.4230769 0.4538462 0.4307692
9  0.4538462 0.4230769 0.3923077 0.3923077 0.4615385 0.4384615 0.4461538
10 0.4923077 0.4230769 0.4230769 0.4076923 0.4384615 0.4692308 0.4692308
11 0.4846154 0.4230769 0.4153846 0.4615385 0.4000000 0.4230769 0.4538462
12 0.5153846 0.4000000 0.3923077 0.4153846 0.4076923 0.4076923 0.4923077
13 0.5461538 0.4153846 0.3769231 0.4230769 0.3923077 0.4615385 0.4307692
14 0.5076923 0.4230769 0.3769231 0.3846154 0.3923077 0.4461538 0.4461538
15 0.4846154 0.4076923 0.4000000 0.3615385 0.4076923 0.4538462 0.4384615
    permut.8  permut.9 permut.10 permut.11 permut.12 permut.13 permut.14
1  0.3230769 0.2923077 0.3230769 0.3000000 0.3230769 0.3230769 0.3230769
2  0.3461538 0.4076923 0.3230769 0.3076923 0.3230769 0.3307692 0.3384615
3  0.3538462 0.4153846 0.3923077 0.3076923 0.4000000 0.3692308 0.3538462
4  0.3615385 0.4000000 0.3923077 0.3000000 0.4000000 0.3846154 0.3769231
5  0.3846154 0.4230769 0.4384615 0.3000000 0.4076923 0.3923077 0.3538462
6  0.3846154 0.4538462 0.3923077 0.3076923 0.3923077 0.4000000 0.3384615
7  0.4076923 0.4153846 0.4538462 0.3076923 0.4230769 0.4230769 0.3846154
8  0.4153846 0.4153846 0.5000000 0.3153846 0.4230769 0.4923077 0.4076923
9  0.4538462 0.3846154 0.4923077 0.3384615 0.3846154 0.4461538 0.4230769
10 0.4769231 0.4153846 0.4923077 0.3615385 0.4384615 0.4769231 0.4461538
11 0.4769231 0.4230769 0.4692308 0.3923077 0.4153846 0.5307692 0.4307692
12 0.4538462 0.4000000 0.4384615 0.3923077 0.3923077 0.5000000 0.3923077
13 0.4615385 0.3538462 0.4230769 0.3769231 0.3923077 0.4692308 0.3923077
14 0.4923077 0.4000000 0.4153846 0.3615385 0.3769231 0.5000000 0.3846154
15 0.4846154 0.3846154 0.4076923 0.3615385 0.3769231 0.4769231 0.4153846
   permut.15 permut.16 permut.17 permut.18 permut.19 permut.20 permut.21
1  0.3461538 0.3692308 0.3615385 0.3230769 0.3230769 0.3307692 0.3230769
2  0.3769231 0.3769231 0.3692308 0.3230769 0.3230769 0.3461538 0.3230769
3  0.3692308 0.3692308 0.3384615 0.3307692 0.2923077 0.3538462 0.3461538
4  0.3769231 0.4000000 0.3846154 0.3461538 0.2846154 0.3692308 0.3615385
5  0.4076923 0.3615385 0.3923077 0.3769231 0.3230769 0.4153846 0.3923077
6  0.4307692 0.3692308 0.4000000 0.3923077 0.3076923 0.4000000 0.3153846
7  0.4230769 0.3384615 0.3846154 0.4307692 0.3153846 0.4153846 0.3384615
8  0.4384615 0.3307692 0.4153846 0.4461538 0.3384615 0.4538462 0.3538462
9  0.4538462 0.3846154 0.3923077 0.4230769 0.2692308 0.4615385 0.3615385
10 0.3846154 0.4307692 0.3769231 0.4461538 0.2846154 0.3692308 0.4153846
11 0.3692308 0.4384615 0.3846154 0.4692308 0.2923077 0.4230769 0.4076923
12 0.3692308 0.4153846 0.3846154 0.4307692 0.2923077 0.3846154 0.4153846
13 0.4000000 0.4538462 0.3769231 0.4076923 0.3076923 0.4000000 0.4384615
14 0.3846154 0.4846154 0.4000000 0.3846154 0.3307692 0.4307692 0.4307692
15 0.3538462 0.4692308 0.4000000 0.3461538 0.3615385 0.4461538 0.4769231
   permut.22 permut.23 permut.24 permut.25 permut.26 permut.27 permut.28
1  0.3230769 0.3384615 0.3307692 0.3230769 0.3384615 0.3230769 0.3153846
2  0.3384615 0.3461538 0.3076923 0.3307692 0.3461538 0.3230769 0.3076923
3  0.3384615 0.3692308 0.3153846 0.3307692 0.3538462 0.3538462 0.3384615
4  0.3307692 0.4230769 0.3384615 0.3538462 0.3615385 0.3846154 0.3538462
5  0.3538462 0.4000000 0.3230769 0.3692308 0.3461538 0.3846154 0.3461538
6  0.3846154 0.4153846 0.3615385 0.3538462 0.3769231 0.4076923 0.3692308
7  0.3846154 0.4153846 0.3769231 0.3846154 0.4153846 0.4538462 0.3461538
8  0.4000000 0.4000000 0.3846154 0.3846154 0.3923077 0.4153846 0.3538462
9  0.3846154 0.4076923 0.3923077 0.4153846 0.4384615 0.4230769 0.3692308
10 0.3769231 0.4307692 0.3769231 0.3692308 0.4076923 0.4153846 0.3846154
11 0.3769231 0.4692308 0.3923077 0.3384615 0.3923077 0.4076923 0.4307692
12 0.4076923 0.4615385 0.4384615 0.3538462 0.3923077 0.4230769 0.3769231
13 0.4076923 0.4384615 0.4153846 0.3769231 0.3615385 0.4000000 0.3923077
14 0.4153846 0.4230769 0.4384615 0.3307692 0.3615385 0.4000000 0.3923077
15 0.4461538 0.4153846 0.4307692 0.3384615 0.3923077 0.3923077 0.4153846
   permut.29 permut.30 permut.31 permut.32 permut.33 permut.34 permut.35
1  0.3230769 0.3384615 0.3230769 0.3230769 0.3307692 0.3615385 0.3230769
2  0.3307692 0.3615385 0.3307692 0.3538462 0.3384615 0.3153846 0.3461538
3  0.4153846 0.3538462 0.3615385 0.3615385 0.3615385 0.3461538 0.3461538
4  0.4153846 0.3615385 0.3384615 0.3923077 0.3846154 0.3538462 0.3461538
5  0.4538462 0.4230769 0.3846154 0.3538462 0.4307692 0.3615385 0.3692308
6  0.4384615 0.4000000 0.3461538 0.3461538 0.4461538 0.3769231 0.3846154
7  0.5076923 0.4230769 0.4230769 0.3461538 0.4153846 0.3692308 0.4000000
8  0.4769231 0.4538462 0.4307692 0.3384615 0.4461538 0.4000000 0.4076923
9  0.4692308 0.4076923 0.4307692 0.3153846 0.3461538 0.4307692 0.3846154
10 0.4230769 0.3769231 0.4153846 0.3384615 0.4000000 0.4307692 0.4153846
11 0.4153846 0.4076923 0.3923077 0.3076923 0.3923077 0.4230769 0.3615385
12 0.4307692 0.3923077 0.3692308 0.3307692 0.3230769 0.4307692 0.3384615
13 0.3615385 0.4000000 0.4076923 0.3769231 0.3461538 0.4230769 0.3384615
14 0.3769231 0.4307692 0.4538462 0.3615385 0.3615385 0.4538462 0.3538462
15 0.4230769 0.3769231 0.4384615 0.3692308 0.3846154 0.4384615 0.3846154
   permut.36 permut.37 permut.38 permut.39 permut.40 permut.41 permut.42
1  0.3076923 0.3153846 0.3230769 0.3384615 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3000000 0.3461538 0.3384615 0.3000000 0.3230769 0.3384615
3  0.3153846 0.2923077 0.3769231 0.3615385 0.3307692 0.3538462 0.3692308
4  0.3384615 0.3000000 0.3692308 0.3615385 0.3307692 0.3461538 0.3846154
5  0.3692308 0.3000000 0.3769231 0.3692308 0.3384615 0.3923077 0.3923077
6  0.3692308 0.3076923 0.3538462 0.3923077 0.3384615 0.4076923 0.4076923
7  0.4076923 0.3615385 0.3769231 0.4153846 0.3538462 0.4384615 0.4076923
8  0.4307692 0.3538462 0.3461538 0.4230769 0.4153846 0.4384615 0.4076923
9  0.4846154 0.3615385 0.3615385 0.4230769 0.4615385 0.4307692 0.4153846
10 0.4461538 0.3615385 0.3692308 0.4461538 0.4538462 0.3461538 0.4307692
11 0.4692308 0.3846154 0.3923077 0.4000000 0.4076923 0.4000000 0.4230769
12 0.4538462 0.4000000 0.3923077 0.3923077 0.3923077 0.3769231 0.3692308
13 0.4769231 0.4153846 0.3846154 0.4000000 0.4076923 0.4000000 0.4076923
14 0.4076923 0.4000000 0.3846154 0.4307692 0.4000000 0.4230769 0.4000000
15 0.3923077 0.4076923 0.3769231 0.4000000 0.4461538 0.4461538 0.3923077
   permut.43 permut.44 permut.45 permut.46 permut.47 permut.48 permut.49
1  0.3230769 0.3153846 0.3538462 0.3307692 0.3230769 0.3384615 0.3307692
2  0.3076923 0.3307692 0.3384615 0.3461538 0.3230769 0.3615385 0.3307692
3  0.3153846 0.3076923 0.3384615 0.3461538 0.3307692 0.3461538 0.3615385
4  0.3384615 0.3307692 0.3153846 0.3384615 0.3230769 0.3076923 0.3692308
5  0.3615385 0.3230769 0.2923077 0.3769231 0.3230769 0.2769231 0.3538462
6  0.4384615 0.3692308 0.3153846 0.4307692 0.3384615 0.3000000 0.4307692
7  0.4461538 0.3538462 0.3538462 0.4384615 0.3769231 0.3307692 0.4307692
8  0.4307692 0.3769231 0.3538462 0.4692308 0.3461538 0.3307692 0.4307692
9  0.4846154 0.3769231 0.3692308 0.4615385 0.4153846 0.3307692 0.4384615
10 0.4846154 0.4230769 0.4000000 0.4846154 0.4615385 0.3384615 0.4769231
11 0.4923077 0.4461538 0.4307692 0.4923077 0.4692308 0.3384615 0.4615385
12 0.5076923 0.4846154 0.4153846 0.4615385 0.4384615 0.2769231 0.4923077
13 0.4846154 0.4923077 0.4461538 0.4538462 0.4000000 0.3153846 0.4153846
14 0.4461538 0.4769231 0.4230769 0.4461538 0.4153846 0.3461538 0.4076923
15 0.4538462 0.4153846 0.4230769 0.4307692 0.4076923 0.3692308 0.4000000
   permut.50 permut.51 permut.52 permut.53 permut.54 permut.55 permut.56
1  0.3384615 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846 0.3153846
2  0.3538462 0.3307692 0.3230769 0.3692308 0.3384615 0.3230769 0.2923077
3  0.3692308 0.3384615 0.3384615 0.3769231 0.3461538 0.3230769 0.3230769
4  0.3615385 0.3307692 0.3692308 0.4230769 0.3615385 0.3384615 0.3076923
5  0.3230769 0.3615385 0.4076923 0.4000000 0.3692308 0.3692308 0.2846154
6  0.3384615 0.4000000 0.4153846 0.3769231 0.3692308 0.3692308 0.3153846
7  0.3461538 0.4153846 0.4384615 0.4384615 0.4230769 0.3923077 0.3538462
8  0.4076923 0.4538462 0.4615385 0.4615385 0.4230769 0.3923077 0.3615385
9  0.3384615 0.4153846 0.4769231 0.4153846 0.3615385 0.4307692 0.3846154
10 0.3538462 0.3923077 0.4615385 0.4307692 0.3615385 0.4461538 0.3692308
11 0.3538462 0.4230769 0.3923077 0.4153846 0.4307692 0.4384615 0.3769231
12 0.3692308 0.4384615 0.4230769 0.4384615 0.4153846 0.4076923 0.3461538
13 0.3538462 0.4461538 0.4307692 0.4000000 0.4307692 0.4307692 0.3461538
14 0.3923077 0.4307692 0.4076923 0.4307692 0.4000000 0.3923077 0.3307692
15 0.3923077 0.4461538 0.3769231 0.4615385 0.4076923 0.4000000 0.3846154
   permut.57 permut.58 permut.59 permut.60 permut.61 permut.62 permut.63
1  0.3307692 0.3230769 0.3000000 0.3230769 0.3230769 0.3307692 0.3615385
2  0.3461538 0.3461538 0.3384615 0.3384615 0.3230769 0.3538462 0.3384615
3  0.3384615 0.3692308 0.3384615 0.3230769 0.3538462 0.3230769 0.3461538
4  0.2923077 0.3846154 0.3615385 0.3307692 0.3846154 0.3692308 0.3615385
5  0.3076923 0.4230769 0.4153846 0.3307692 0.3923077 0.3615385 0.3846154
6  0.3000000 0.4230769 0.3846154 0.3384615 0.4307692 0.3846154 0.4076923
7  0.3153846 0.4307692 0.4153846 0.3384615 0.4307692 0.3769231 0.4461538
8  0.3230769 0.4076923 0.4307692 0.3923077 0.4230769 0.4307692 0.4230769
9  0.3538462 0.4153846 0.4615385 0.4461538 0.4307692 0.3923077 0.4307692
10 0.3692308 0.4307692 0.4769231 0.4230769 0.4769231 0.4000000 0.4153846
11 0.4000000 0.4153846 0.4461538 0.4230769 0.4384615 0.3846154 0.4307692
12 0.4230769 0.3615385 0.3923077 0.4384615 0.4692308 0.3769231 0.4692308
13 0.3846154 0.3538462 0.3923077 0.4230769 0.4769231 0.3538462 0.4846154
14 0.4384615 0.3538462 0.4076923 0.4000000 0.4692308 0.3769231 0.4846154
15 0.4307692 0.3769231 0.4153846 0.4538462 0.4230769 0.3769231 0.4538462
   permut.64 permut.65 permut.66 permut.67 permut.68 permut.69 permut.70
1  0.3461538 0.3538462 0.3230769 0.3230769 0.3384615 0.3230769 0.3230769
2  0.3230769 0.3615385 0.3538462 0.3000000 0.3461538 0.3230769 0.3692308
3  0.3000000 0.3538462 0.3307692 0.3538462 0.3384615 0.3615385 0.3615385
4  0.3076923 0.3769231 0.3769231 0.3307692 0.3307692 0.4000000 0.3384615
5  0.3153846 0.4076923 0.3692308 0.3307692 0.3538462 0.4153846 0.3615385
6  0.3384615 0.3923077 0.4076923 0.3461538 0.3769231 0.4230769 0.3846154
7  0.3461538 0.4000000 0.3769231 0.3384615 0.3538462 0.4307692 0.4692308
8  0.3615385 0.3615385 0.4461538 0.3923077 0.3461538 0.4692308 0.4692308
9  0.3615385 0.4230769 0.4000000 0.3307692 0.3615385 0.4230769 0.4615385
10 0.3538462 0.4230769 0.4153846 0.3615385 0.3692308 0.4153846 0.4923077
11 0.3692308 0.3769231 0.4384615 0.3538462 0.3846154 0.4307692 0.4846154
12 0.3461538 0.4153846 0.4692308 0.4307692 0.4000000 0.4000000 0.4846154
13 0.3538462 0.4000000 0.4384615 0.4000000 0.4230769 0.4461538 0.5076923
14 0.3846154 0.4230769 0.4461538 0.4461538 0.4692308 0.3692308 0.5230769
15 0.3692308 0.4000000 0.4384615 0.4461538 0.3923077 0.4076923 0.4923077
   permut.71 permut.72 permut.73 permut.74 permut.75 permut.76 permut.77
1  0.3307692 0.3230769 0.3384615 0.3230769 0.3230769 0.3307692 0.3461538
2  0.3461538 0.3230769 0.3307692 0.3307692 0.3230769 0.3461538 0.3692308
3  0.3384615 0.3692308 0.3692308 0.3384615 0.3384615 0.3692308 0.3769231
4  0.3307692 0.4000000 0.3384615 0.3153846 0.3461538 0.3615385 0.3846154
5  0.3000000 0.4615385 0.3692308 0.3769231 0.4000000 0.3769231 0.3846154
6  0.3153846 0.4307692 0.3846154 0.4000000 0.3923077 0.3923077 0.3615385
7  0.3307692 0.4000000 0.3923077 0.3846154 0.4846154 0.3615385 0.3923077
8  0.3076923 0.4076923 0.3923077 0.4000000 0.4461538 0.3923077 0.3538462
9  0.3538462 0.4307692 0.4000000 0.4153846 0.4692308 0.4153846 0.3307692
10 0.3615385 0.3846154 0.4153846 0.4461538 0.4153846 0.4307692 0.3769231
11 0.3615385 0.4230769 0.4230769 0.4692308 0.4461538 0.4461538 0.4000000
12 0.4153846 0.4076923 0.4538462 0.4923077 0.4615385 0.3692308 0.4230769
13 0.3846154 0.4153846 0.4230769 0.4846154 0.4307692 0.3538462 0.3923077
14 0.4076923 0.4000000 0.4384615 0.4846154 0.4076923 0.4000000 0.3692308
15 0.3769231 0.4076923 0.4538462 0.4923077 0.3846154 0.4153846 0.3615385
   permut.78 permut.79 permut.80 permut.81 permut.82 permut.83 permut.84
1  0.3230769 0.3461538 0.3230769 0.3230769 0.3230769 0.3076923 0.2923077
2  0.2923077 0.3538462 0.3230769 0.3384615 0.3230769 0.3153846 0.2923077
3  0.3153846 0.3538462 0.3538462 0.3307692 0.3076923 0.3076923 0.3230769
4  0.3153846 0.3615385 0.3538462 0.3615385 0.3230769 0.3153846 0.3307692
5  0.3538462 0.3769231 0.4076923 0.4076923 0.3307692 0.3307692 0.3307692
6  0.4000000 0.3692308 0.4153846 0.4307692 0.3769231 0.3615385 0.3538462
7  0.4153846 0.4076923 0.4307692 0.4384615 0.4153846 0.4307692 0.3692308
8  0.4615385 0.4153846 0.4461538 0.4461538 0.4307692 0.4076923 0.3923077
9  0.4538462 0.4307692 0.5153846 0.4384615 0.4153846 0.4307692 0.4000000
10 0.4384615 0.4153846 0.5000000 0.4692308 0.3692308 0.3538462 0.4230769
11 0.4615385 0.4153846 0.5153846 0.4692308 0.3769231 0.3538462 0.4307692
12 0.4692308 0.4307692 0.5076923 0.4538462 0.3692308 0.3769231 0.4461538
13 0.4923077 0.4307692 0.5000000 0.4461538 0.3692308 0.3615385 0.4615385
14 0.5076923 0.3923077 0.5153846 0.4076923 0.3846154 0.3538462 0.4538462
15 0.5076923 0.3461538 0.5000000 0.4384615 0.3538462 0.3769231 0.4384615
   permut.85 permut.86 permut.87 permut.88 permut.89 permut.90 permut.91
1  0.3230769 0.3230769 0.3538462 0.2923077 0.3230769 0.3230769 0.3230769
2  0.3538462 0.3384615 0.3538462 0.3230769 0.3076923 0.3538462 0.3230769
3  0.3538462 0.3230769 0.3615385 0.3538462 0.2923077 0.3538462 0.3307692
4  0.3846154 0.3769231 0.3769231 0.3615385 0.3076923 0.3692308 0.3384615
5  0.3615385 0.3769231 0.3923077 0.3538462 0.3000000 0.3923077 0.3461538
6  0.3307692 0.4000000 0.3615385 0.3769231 0.3230769 0.4384615 0.3153846
7  0.3153846 0.4230769 0.3615385 0.4153846 0.3538462 0.4076923 0.3538462
8  0.3000000 0.4538462 0.3846154 0.4153846 0.3769231 0.4461538 0.3846154
9  0.3538462 0.4461538 0.3923077 0.4000000 0.3923077 0.4307692 0.4076923
10 0.3923077 0.4769231 0.4384615 0.3923077 0.3846154 0.5000000 0.4076923
11 0.3846154 0.4384615 0.3615385 0.3923077 0.3153846 0.4923077 0.4615385
12 0.3923077 0.4384615 0.3615385 0.3692308 0.3153846 0.5076923 0.4615385
13 0.4000000 0.4538462 0.4153846 0.3538462 0.3076923 0.5230769 0.4384615
14 0.4230769 0.4461538 0.4384615 0.3923077 0.3153846 0.5153846 0.3923077
15 0.4076923 0.4615385 0.4000000 0.4461538 0.3461538 0.4384615 0.3692308
   permut.92 permut.93 permut.94 permut.95 permut.96 permut.97 permut.98
1  0.3230769 0.3230769 0.3230769 0.3230769 0.3307692 0.3230769 0.3230769
2  0.3384615 0.3230769 0.3384615 0.3615385 0.3692308 0.3230769 0.3230769
3  0.3615385 0.3230769 0.3615385 0.3461538 0.3923077 0.3153846 0.3307692
4  0.2923077 0.3769231 0.3923077 0.3769231 0.4692308 0.3384615 0.3538462
5  0.3307692 0.3846154 0.4461538 0.4153846 0.4538462 0.3153846 0.4153846
6  0.3769231 0.4615385 0.4461538 0.4538462 0.4384615 0.3538462 0.4230769
7  0.3923077 0.4307692 0.4076923 0.4615385 0.4000000 0.3846154 0.4692308
8  0.4538462 0.4461538 0.4461538 0.4307692 0.4153846 0.4000000 0.4615385
9  0.4153846 0.4692308 0.4384615 0.4615385 0.4076923 0.4153846 0.4769231
10 0.3923077 0.5076923 0.4692308 0.4538462 0.4076923 0.4230769 0.4615385
11 0.4076923 0.5230769 0.4384615 0.4230769 0.4538462 0.4076923 0.4076923
12 0.4076923 0.5307692 0.3923077 0.4230769 0.4384615 0.3923077 0.4307692
13 0.4384615 0.5076923 0.4307692 0.4615385 0.3923077 0.4076923 0.4000000
14 0.4230769 0.5153846 0.3769231 0.4000000 0.4076923 0.4230769 0.3846154
15 0.3923077 0.4769231 0.4153846 0.4000000 0.4307692 0.4000000 0.3769231
   permut.99 permut.100  err.mean     err.sd   err.sterr
1  0.3307692  0.3230769 0.3272308 0.01389097 0.001389097
2  0.3153846  0.3615385 0.3356154 0.02093548 0.002093548
3  0.3461538  0.3692308 0.3456923 0.02490362 0.002490362
4  0.3615385  0.3846154 0.3560769 0.03316787 0.003316787
5  0.3846154  0.4076923 0.3707692 0.04034991 0.004034991
6  0.4000000  0.4538462 0.3833077 0.04032109 0.004032109
7  0.4076923  0.4461538 0.3985385 0.04091908 0.004091908
8  0.4230769  0.3923077 0.4089231 0.04284598 0.004284598
9  0.3692308  0.4153846 0.4121538 0.04351674 0.004351674
10 0.3384615  0.4307692 0.4173846 0.04475503 0.004475503
11 0.3461538  0.4230769 0.4177692 0.04503560 0.004503560
12 0.3615385  0.4230769 0.4145385 0.04877184 0.004877184
13 0.3615385  0.4153846 0.4137692 0.04680064 0.004680064
14 0.3461538  0.4307692 0.4144615 0.04505663 0.004505663
15 0.3307692  0.3846154 0.4120000 0.03942568 0.003942568

$permut.stepwise.qda$best.p
[1] 1

$permut.stepwise.qda$best.error
[1] 0.3230769

$permut.stepwise.qda$best.pda
$permut.stepwise.qda$best.pda$class
  [1] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [19] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [37] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [55] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [73] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [91] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
[109] CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
[127] CTL CTL CTL CTL
Levels: CTL MET

$permut.stepwise.qda$best.pda$posterior
             CTL       MET
  [1,] 0.6876154 0.3123846
  [2,] 0.5822959 0.4177041
  [3,] 0.6181088 0.3818912
  [4,] 0.5822959 0.4177041
  [5,] 0.7228883 0.2771117
  [6,] 0.6909895 0.3090105
  [7,] 0.7443508 0.2556492
  [8,] 0.6893838 0.3106162
  [9,] 0.7210837 0.2789163
 [10,] 0.5490399 0.4509601
 [11,] 0.7039179 0.2960821
 [12,] 0.6732632 0.3267368
 [13,] 0.6963688 0.3036312
 [14,] 0.5647075 0.4352925
 [15,] 0.7160705 0.2839295
 [16,] 0.7147357 0.2852643
 [17,] 0.6894180 0.3105820
 [18,] 0.6787572 0.3212428
 [19,] 0.7148502 0.2851498
 [20,] 0.7027451 0.2972549
 [21,] 0.7140377 0.2859623
 [22,] 0.7222909 0.2777091
 [23,] 0.6744340 0.3255660
 [24,] 0.6730957 0.3269043
 [25,] 0.6730957 0.3269043
 [26,] 0.7305948 0.2694052
 [27,] 0.7014075 0.2985925
 [28,] 0.6419782 0.3580218
 [29,] 0.6562084 0.3437916
 [30,] 0.7155267 0.2844733
 [31,] 0.7076570 0.2923430
 [32,] 0.6869603 0.3130397
 [33,] 0.7795108 0.2204892
 [34,] 0.5691553 0.4308447
 [35,] 0.5691553 0.4308447
 [36,] 0.6770991 0.3229009
 [37,] 0.6900742 0.3099258
 [38,] 0.6737654 0.3262346
 [39,] 0.6769329 0.3230671
 [40,] 0.6866334 0.3133666
 [41,] 0.6848416 0.3151584
 [42,] 0.6615072 0.3384928
 [43,] 0.6785671 0.3214329
 [44,] 0.6572979 0.3427021
 [45,] 0.7231234 0.2768766
 [46,] 0.6808832 0.3191168
 [47,] 0.7109321 0.2890679
 [48,] 0.6661472 0.3338528
 [49,] 0.6661472 0.3338528
 [50,] 0.6710802 0.3289198
 [51,] 0.6968995 0.3031005
 [52,] 0.6622027 0.3377973
 [53,] 0.7181279 0.2818721
 [54,] 0.6429881 0.3570119
 [55,] 0.6429881 0.3570119
 [56,] 0.7085665 0.2914335
 [57,] 0.7066347 0.2933653
 [58,] 0.6840244 0.3159756
 [59,] 0.6626095 0.3373905
 [60,] 0.7982011 0.2017989
 [61,] 0.6680368 0.3319632
 [62,] 0.7111298 0.2888702
 [63,] 0.6424410 0.3575590
 [64,] 0.6311753 0.3688247
 [65,] 0.7089719 0.2910281
 [66,] 0.6707045 0.3292955
 [67,] 0.6685459 0.3314541
 [68,] 0.6817275 0.3182725
 [69,] 0.6256712 0.3743288
 [70,] 0.6698615 0.3301385
 [71,] 0.6009650 0.3990350
 [72,] 0.6744340 0.3255660
 [73,] 0.7027339 0.2972661
 [74,] 0.7027339 0.2972661
 [75,] 0.7024495 0.2975505
 [76,] 0.6848416 0.3151584
 [77,] 0.7052175 0.2947825
 [78,] 0.6271456 0.3728544
 [79,] 0.6812131 0.3187869
 [80,] 0.6523919 0.3476081
 [81,] 0.6877792 0.3122208
 [82,] 0.6927436 0.3072564
 [83,] 0.7202506 0.2797494
 [84,] 0.7228437 0.2771563
 [85,] 0.7027451 0.2972549
 [86,] 0.6395079 0.3604921
 [87,] 0.6470923 0.3529077
 [88,] 0.6933781 0.3066219
 [89,] 0.6553088 0.3446912
 [90,] 0.6905088 0.3094912
 [91,] 0.6767668 0.3232332
 [92,] 0.6560289 0.3439711
 [93,] 0.7069145 0.2930855
 [94,] 0.6946409 0.3053591
 [95,] 0.6810691 0.3189309
 [96,] 0.7070540 0.2929460
 [97,] 0.6985679 0.3014321
 [98,] 0.6734307 0.3265693
 [99,] 0.6693764 0.3306236
[100,] 0.6065793 0.3934207
[101,] 0.7169251 0.2830749
[102,] 0.7049306 0.2950694
[103,] 0.6715850 0.3284150
[104,] 0.6930611 0.3069389
[105,] 0.6443785 0.3556215
[106,] 0.7000522 0.2999478
[107,] 0.7066347 0.2933653
[108,] 0.6871205 0.3128795
[109,] 0.6804097 0.3195903
[110,] 0.6804097 0.3195903
[111,] 0.6569715 0.3430285
[112,] 0.6722571 0.3277429
[113,] 0.6473114 0.3526886
[114,] 0.6659783 0.3340217
[115,] 0.6576251 0.3423749
[116,] 0.6820564 0.3179436
[117,] 0.6849940 0.3150060
[118,] 0.6690179 0.3309821
[119,] 0.7052493 0.2947507
[120,] 0.6871241 0.3128759
[121,] 0.7234667 0.2765333
[122,] 0.6509829 0.3490171
[123,] 0.6555140 0.3444860
[124,] 0.6999005 0.3000995
[125,] 0.7009576 0.2990424
[126,] 0.6236597 0.3763403
[127,] 0.6646286 0.3353714
[128,] 0.7168209 0.2831791
[129,] 0.6620291 0.3379709
[130,] 0.6632420 0.3367580

$permut.stepwise.qda$best.pda$call
qda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$permut.stepwise.qda$best.pda$training.label
  [1] MET CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL MET CTL MET CTL MET CTL
 [19] CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL MET MET MET CTL CTL CTL
 [37] MET CTL CTL CTL CTL CTL MET MET MET MET MET MET MET CTL MET CTL CTL CTL
 [55] CTL CTL CTL CTL MET MET CTL MET MET CTL CTL MET CTL CTL CTL MET CTL CTL
 [73] MET MET CTL CTL CTL CTL MET CTL MET CTL CTL CTL CTL CTL MET CTL CTL CTL
 [91] CTL CTL CTL CTL CTL CTL MET CTL MET CTL CTL CTL CTL CTL MET CTL CTL CTL
[109] CTL CTL MET CTL CTL MET MET CTL MET MET MET MET CTL MET MET CTL CTL CTL
[127] MET CTL CTL CTL
Levels: CTL MET

$permut.stepwise.qda$best.pda$pda.method
[1] "qda"

$permut.stepwise.qda$best.pda$loo
[1] TRUE

$permut.stepwise.qda$best.pda$validation
[1] "LOO"

$permut.stepwise.qda$best.pda$confusion
      true
object CTL MET
   CTL  88  42
   MET   0   0
attr(,"error")
[1] 0.3230769



$permut.pc.stepwise.qda
$permut.pc.stepwise.qda$confusion.table
        error CTL.CTL CTL.MET MET.CTL MET.MET
1   0.3230769      88       0      42       0
2   0.3230769      88       0      42       0
3   0.2846154      87       1      36       6
4   0.3307692      82       6      37       5
5   0.3230769      88       0      42       0
6   0.2846154      81       7      30      12
7   0.3230769      88       0      42       0
8   0.3000000      84       4      35       7
9   0.3230769      77      11      31      11
10  0.3153846      83       5      36       6
11  0.3230769      88       0      42       0
12  0.2846154      80       8      29      13
13  0.2846154      84       4      33       9
14  0.3153846      85       3      38       4
15  0.3230769      88       0      42       0
16  0.2769231      85       3      33       9
17  0.3153846      84       4      37       5
18  0.2923077      84       4      34       8
19  0.3153846      81       7      34       8
20  0.3461538      85       3      42       0
21  0.3230769      73      15      27      15
22  0.3230769      88       0      42       0
23  0.3307692      87       1      42       0
24  0.3230769      88       0      42       0
25  0.3230769      88       0      42       0
26  0.3230769      88       0      42       0
27  0.3153846      83       5      36       6
28  0.3000000      69      19      20      22
29  0.2923077      81       7      31      11
30  0.3230769      86       2      40       2
31  0.3076923      84       4      36       6
32  0.3000000      83       5      34       8
33  0.3230769      88       0      42       0
34  0.3307692      85       3      40       2
35  0.3230769      81       7      35       7
36  0.3230769      88       0      42       0
37  0.3230769      88       0      42       0
38  0.3230769      88       0      42       0
39  0.3307692      80       8      35       7
40  0.3230769      88       0      42       0
41  0.3000000      83       5      34       8
42  0.3230769      88       0      42       0
43  0.3000000      81       7      32      10
44  0.3230769      88       0      42       0
45  0.3230769      88       0      42       0
46  0.3076923      81       7      33       9
47  0.3000000      78      10      29      13
48  0.3230769      88       0      42       0
49  0.3230769      88       0      42       0
50  0.3153846      86       2      39       3
51  0.3230769      88       0      42       0
52  0.3307692      87       1      42       0
53  0.3153846      85       3      38       4
54  0.3076923      75      13      27      15
55  0.3230769      88       0      42       0
56  0.2923077      88       0      38       4
57  0.3000000      78      10      29      13
58  0.3000000      84       4      35       7
59  0.3230769      88       0      42       0
60  0.3230769      88       0      42       0
61  0.3230769      88       0      42       0
62  0.3230769      88       0      42       0
63  0.3153846      82       6      35       7
64  0.3230769      88       0      42       0
65  0.3230769      88       0      42       0
66  0.3153846      84       4      37       5
67  0.3076923      84       4      36       6
68  0.2461538      80       8      24      18
69  0.3230769      88       0      42       0
70  0.3230769      88       0      42       0
71  0.3153846      85       3      38       4
72  0.3230769      88       0      42       0
73  0.3153846      84       4      37       5
74  0.3153846      73      15      26      16
75  0.3230769      88       0      42       0
76  0.3230769      88       0      42       0
77  0.3230769      88       0      42       0
78  0.3230769      88       0      42       0
79  0.3307692      87       1      42       0
80  0.3230769      88       0      42       0
81  0.3230769      88       0      42       0
82  0.2461538      81       7      25      17
83  0.3307692      87       1      42       0
84  0.2923077      82       6      32      10
85  0.3000000      80       8      31      11
86  0.2846154      81       7      30      12
87  0.3153846      86       2      39       3
88  0.3230769      88       0      42       0
89  0.3230769      78      10      32      10
90  0.3461538      85       3      42       0
91  0.3076923      81       7      33       9
92  0.3230769      88       0      42       0
93  0.3230769      88       0      42       0
94  0.3230769      88       0      42       0
95  0.3384615      78      10      34       8
96  0.3307692      80       8      35       7
97  0.2923077      83       5      33       9
98  0.3153846      79       9      32      10
99  0.3230769      85       3      39       3
100 0.3307692      72      16      27      15

$permut.pc.stepwise.qda$errors
    permut.1  permut.2  permut.3  permut.4  permut.5  permut.6  permut.7
1  0.3230769 0.3230769 0.2846154 0.3384615 0.3230769 0.2846154 0.3230769
2  0.3384615 0.3230769 0.2923077 0.3307692 0.3230769 0.3000000 0.3538462
3  0.3692308 0.3307692 0.3230769 0.3384615 0.3384615 0.3230769 0.4000000
4  0.3692308 0.3846154 0.3384615 0.3461538 0.3615385 0.3384615 0.4230769
5  0.3846154 0.4076923 0.3384615 0.3615385 0.4000000 0.3384615 0.3846154
6  0.3846154 0.4153846 0.3384615 0.3461538 0.3769231 0.3615385 0.4384615
7  0.3846154 0.4230769 0.3538462 0.3846154 0.4384615 0.3923077 0.4769231
8  0.4153846 0.4384615 0.4076923 0.3538462 0.4615385 0.3769231 0.4230769
9  0.3384615 0.4461538 0.4615385 0.3461538 0.4769231 0.4000000 0.4692308
10 0.3307692 0.4923077 0.4461538 0.3615385 0.4923077 0.3538462 0.4692308
11 0.3538462 0.5307692 0.4076923 0.3461538 0.4846154 0.4153846 0.4846154
12 0.3846154 0.5076923 0.4000000 0.3615385 0.4923077 0.3769231 0.5000000
13 0.4153846 0.5153846 0.3692308 0.4153846 0.4923077 0.3615385 0.4461538
14 0.4384615 0.4846154 0.3384615 0.4307692 0.5000000 0.3615385 0.4307692
15 0.3923077 0.5076923 0.3230769 0.3769231 0.4846154 0.3692308 0.4307692
    permut.8  permut.9 permut.10 permut.11 permut.12 permut.13 permut.14
1  0.3307692 0.3384615 0.3461538 0.3230769 0.2923077 0.3230769 0.3307692
2  0.3000000 0.3461538 0.3384615 0.3461538 0.3000000 0.3461538 0.3153846
3  0.3153846 0.3692308 0.3153846 0.3615385 0.2923077 0.2846154 0.3307692
4  0.3615385 0.3692308 0.3384615 0.3692308 0.3076923 0.3153846 0.3461538
5  0.3076923 0.3230769 0.3692308 0.3769231 0.2846154 0.3307692 0.3384615
6  0.3384615 0.3461538 0.3769231 0.3923077 0.3076923 0.3307692 0.3769231
7  0.3615385 0.3846154 0.4153846 0.4153846 0.3230769 0.3076923 0.4000000
8  0.4000000 0.4076923 0.4076923 0.4000000 0.3461538 0.3384615 0.4000000
9  0.4000000 0.4153846 0.4230769 0.4153846 0.3769231 0.3615385 0.4000000
10 0.4230769 0.4153846 0.4153846 0.4307692 0.3923077 0.3538462 0.4153846
11 0.4615385 0.3846154 0.4076923 0.4230769 0.3769231 0.3076923 0.4461538
12 0.4692308 0.4230769 0.4384615 0.3923077 0.3538462 0.3153846 0.4384615
13 0.4615385 0.4230769 0.4538462 0.4384615 0.3846154 0.3230769 0.4615385
14 0.4615385 0.4230769 0.4923077 0.4307692 0.3923077 0.3461538 0.4692308
15 0.4615385 0.4230769 0.5153846 0.4230769 0.3846154 0.3538462 0.4538462
   permut.15 permut.16 permut.17 permut.18 permut.19 permut.20 permut.21
1  0.3230769 0.2923077 0.3384615 0.2923077 0.3384615 0.3461538 0.3230769
2  0.3461538 0.2769231 0.3153846 0.3076923 0.3307692 0.3538462 0.3230769
3  0.3384615 0.3153846 0.3153846 0.3153846 0.3153846 0.3769231 0.3538462
4  0.3769231 0.3384615 0.3153846 0.3615385 0.3384615 0.3846154 0.3923077
5  0.3692308 0.3076923 0.3615385 0.3615385 0.3769231 0.4307692 0.4076923
6  0.3923077 0.3000000 0.3846154 0.3846154 0.3769231 0.4384615 0.3769231
7  0.4307692 0.3153846 0.3923077 0.4384615 0.3615385 0.4538462 0.4230769
8  0.3923077 0.3153846 0.4230769 0.4000000 0.3692308 0.4307692 0.4076923
9  0.4153846 0.3384615 0.3769231 0.3846154 0.3846154 0.4538462 0.4230769
10 0.4000000 0.3615385 0.4000000 0.4230769 0.3846154 0.4384615 0.4153846
11 0.3846154 0.4000000 0.3538462 0.4230769 0.3846154 0.4000000 0.4230769
12 0.4230769 0.4307692 0.3615385 0.4384615 0.3846154 0.4230769 0.4153846
13 0.4461538 0.3923077 0.3461538 0.4230769 0.3769231 0.4230769 0.3615385
14 0.3846154 0.4076923 0.3230769 0.4692308 0.4000000 0.4538462 0.3461538
15 0.4307692 0.4230769 0.3230769 0.4076923 0.4461538 0.4538462 0.3230769
   permut.22 permut.23 permut.24 permut.25 permut.26 permut.27 permut.28
1  0.3230769 0.3307692 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769
2  0.3538462 0.3307692 0.3384615 0.3538462 0.3384615 0.3153846 0.3230769
3  0.3692308 0.3538462 0.3307692 0.3923077 0.3384615 0.3692308 0.3461538
4  0.4000000 0.3923077 0.3846154 0.3769231 0.3692308 0.3307692 0.4000000
5  0.4153846 0.4230769 0.4076923 0.3615385 0.4153846 0.3923077 0.3230769
6  0.4230769 0.4076923 0.4307692 0.3384615 0.3615385 0.4153846 0.3538462
7  0.4230769 0.4461538 0.4307692 0.3538462 0.4307692 0.4384615 0.3384615
8  0.4538462 0.4538462 0.4076923 0.3615385 0.4846154 0.4615385 0.3384615
9  0.4692308 0.4538462 0.4307692 0.3923077 0.4923077 0.4307692 0.3153846
10 0.4692308 0.4230769 0.4076923 0.3923077 0.4692308 0.4615385 0.3384615
11 0.5230769 0.4076923 0.3769231 0.3692308 0.4461538 0.4230769 0.3384615
12 0.4923077 0.4076923 0.4153846 0.3846154 0.4384615 0.4307692 0.3000000
13 0.4923077 0.4076923 0.3846154 0.4076923 0.4615385 0.4307692 0.3153846
14 0.4692308 0.3846154 0.3384615 0.4000000 0.4769231 0.4538462 0.3153846
15 0.4307692 0.3846154 0.3461538 0.3846154 0.4384615 0.4538462 0.3384615
   permut.29 permut.30 permut.31 permut.32 permut.33 permut.34 permut.35
1  0.2923077 0.3230769 0.3076923 0.3307692 0.3230769 0.3307692 0.3230769
2  0.2923077 0.3384615 0.3230769 0.3000000 0.3538462 0.3384615 0.3538462
3  0.2923077 0.3538462 0.3153846 0.3000000 0.3692308 0.3692308 0.3230769
4  0.3230769 0.3923077 0.3461538 0.3153846 0.4000000 0.3923077 0.3307692
5  0.3230769 0.4000000 0.3692308 0.3076923 0.4153846 0.3615385 0.3846154
6  0.3307692 0.4000000 0.4076923 0.3076923 0.4615385 0.3923077 0.4461538
7  0.3692308 0.3692308 0.4000000 0.3230769 0.4307692 0.4076923 0.4615385
8  0.3923077 0.4230769 0.3692308 0.3692308 0.3769231 0.4692308 0.4153846
9  0.3769231 0.3923077 0.3846154 0.4076923 0.3846154 0.4615385 0.4384615
10 0.3846154 0.4461538 0.4153846 0.4384615 0.4000000 0.4692308 0.4538462
11 0.3923077 0.4692308 0.4307692 0.4538462 0.3923077 0.4923077 0.4538462
12 0.3923077 0.4615385 0.4615385 0.4000000 0.4000000 0.4846154 0.4538462
13 0.4076923 0.4230769 0.4384615 0.4000000 0.4230769 0.5000000 0.4384615
14 0.4846154 0.4692308 0.4615385 0.3615385 0.3923077 0.5000000 0.4538462
15 0.4538462 0.4538462 0.4538462 0.3538462 0.3769231 0.4846154 0.4615385
   permut.36 permut.37 permut.38 permut.39 permut.40 permut.41 permut.42
1  0.3230769 0.3230769 0.3230769 0.3384615 0.3230769 0.3230769 0.3230769
2  0.3384615 0.3538462 0.3230769 0.3846154 0.3615385 0.3000000 0.3230769
3  0.3307692 0.3769231 0.3230769 0.3538462 0.3923077 0.3000000 0.3461538
4  0.3461538 0.3538462 0.3307692 0.3307692 0.4615385 0.3307692 0.3615385
5  0.3538462 0.3769231 0.3846154 0.3615385 0.4846154 0.3461538 0.3692308
6  0.3615385 0.4076923 0.4538462 0.4076923 0.4153846 0.3461538 0.4307692
7  0.4000000 0.3538462 0.4769231 0.4076923 0.4230769 0.3384615 0.4384615
8  0.4307692 0.3692308 0.4230769 0.4384615 0.4538462 0.4076923 0.4384615
9  0.4615385 0.3461538 0.4692308 0.4923077 0.4923077 0.4230769 0.4307692
10 0.4846154 0.4000000 0.4923077 0.5076923 0.4538462 0.4076923 0.4538462
11 0.5076923 0.4384615 0.4769231 0.5000000 0.4923077 0.3923077 0.4538462
12 0.4615385 0.4384615 0.4769231 0.4384615 0.4538462 0.3923077 0.4769231
13 0.4230769 0.4769231 0.4923077 0.4692308 0.4307692 0.4307692 0.4538462
14 0.4153846 0.4461538 0.4769231 0.4923077 0.4461538 0.4307692 0.4153846
15 0.4076923 0.4692308 0.4846154 0.4615385 0.4846154 0.4000000 0.4230769
   permut.43 permut.44 permut.45 permut.46 permut.47 permut.48 permut.49
1  0.3461538 0.3230769 0.3230769 0.3230769 0.3461538 0.3230769 0.3230769
2  0.3538462 0.3230769 0.3230769 0.3230769 0.3000000 0.3461538 0.3615385
3  0.3153846 0.3461538 0.3384615 0.3384615 0.3153846 0.3461538 0.3461538
4  0.3153846 0.4153846 0.3461538 0.3076923 0.3000000 0.3384615 0.3384615
5  0.3076923 0.4307692 0.4076923 0.3384615 0.3384615 0.4076923 0.4384615
6  0.3000000 0.4692308 0.3538462 0.3692308 0.3538462 0.4307692 0.3923077
7  0.3461538 0.3769231 0.3846154 0.4000000 0.4000000 0.4538462 0.4153846
8  0.3923077 0.3846154 0.4153846 0.4307692 0.3615385 0.4538462 0.4000000
9  0.4307692 0.4153846 0.4692308 0.4153846 0.3461538 0.4692308 0.3769231
10 0.4307692 0.4384615 0.4538462 0.4307692 0.3153846 0.4538462 0.4230769
11 0.4307692 0.4307692 0.4384615 0.4692308 0.3461538 0.4000000 0.4461538
12 0.4384615 0.4538462 0.3692308 0.4538462 0.3615385 0.3615385 0.4692308
13 0.3769231 0.4153846 0.3846154 0.4307692 0.3384615 0.4000000 0.4384615
14 0.4000000 0.4076923 0.4000000 0.4000000 0.3153846 0.3769231 0.4230769
15 0.4076923 0.3923077 0.3461538 0.3923077 0.3538462 0.3923077 0.4461538
   permut.50 permut.51 permut.52 permut.53 permut.54 permut.55 permut.56
1  0.3230769 0.3230769 0.3307692 0.3230769 0.3230769 0.3230769 0.2923077
2  0.3153846 0.3384615 0.3384615 0.3153846 0.3461538 0.3461538 0.3153846
3  0.3461538 0.3692308 0.3461538 0.3461538 0.3538462 0.3692308 0.3230769
4  0.3846154 0.3538462 0.3846154 0.3384615 0.3769231 0.3846154 0.3153846
5  0.3923077 0.3615385 0.3846154 0.4000000 0.3230769 0.3923077 0.3230769
6  0.4153846 0.3692308 0.4461538 0.4230769 0.3076923 0.4076923 0.3461538
7  0.4153846 0.4000000 0.3769231 0.4384615 0.3384615 0.4076923 0.3769231
8  0.4461538 0.4153846 0.3846154 0.4307692 0.3384615 0.4692308 0.4230769
9  0.4461538 0.3846154 0.4307692 0.4153846 0.3076923 0.4384615 0.4461538
10 0.4692308 0.4230769 0.4000000 0.3923077 0.3384615 0.4461538 0.4461538
11 0.4846154 0.4153846 0.4076923 0.4076923 0.3615385 0.4769231 0.4384615
12 0.4846154 0.4076923 0.4000000 0.3923077 0.3384615 0.4615385 0.4307692
13 0.4769231 0.4461538 0.4384615 0.3846154 0.3461538 0.5153846 0.3923077
14 0.4384615 0.4230769 0.4461538 0.3461538 0.3769231 0.5000000 0.4153846
15 0.4538462 0.3769231 0.4769231 0.3769231 0.3615385 0.5615385 0.3769231
   permut.57 permut.58 permut.59 permut.60 permut.61 permut.62 permut.63
1  0.3307692 0.3230769 0.3230769 0.3230769 0.3230769 0.3230769 0.3153846
2  0.3307692 0.3000000 0.4307692 0.3230769 0.3615385 0.3461538 0.3461538
3  0.3000000 0.3230769 0.4230769 0.3230769 0.3615385 0.3538462 0.3692308
4  0.3769231 0.3538462 0.4076923 0.3538462 0.3923077 0.3769231 0.3846154
5  0.3230769 0.3769231 0.3461538 0.3769231 0.4384615 0.4000000 0.4076923
6  0.3615385 0.3461538 0.3923077 0.4153846 0.4307692 0.4000000 0.4000000
7  0.3769231 0.3538462 0.3923077 0.4230769 0.4692308 0.4307692 0.4076923
8  0.3692308 0.3615385 0.3923077 0.4923077 0.4230769 0.4846154 0.3923077
9  0.3923077 0.3769231 0.4153846 0.5307692 0.4846154 0.5230769 0.3615385
10 0.3923077 0.3846154 0.4153846 0.5307692 0.5230769 0.5230769 0.3615385
11 0.3384615 0.3923077 0.4461538 0.5615385 0.5307692 0.5230769 0.3692308
12 0.3538462 0.4000000 0.4307692 0.5461538 0.4769231 0.4307692 0.3538462
13 0.3384615 0.3846154 0.4384615 0.4846154 0.4769231 0.4307692 0.3615385
14 0.3615385 0.3846154 0.4384615 0.4846154 0.4923077 0.4307692 0.3615385
15 0.3538462 0.3769231 0.4076923 0.5000000 0.4692308 0.4692308 0.3692308
   permut.64 permut.65 permut.66 permut.67 permut.68 permut.69 permut.70
1  0.3230769 0.3230769 0.3307692 0.3076923 0.3076923 0.3230769 0.3230769
2  0.3230769 0.3307692 0.3153846 0.3307692 0.3153846 0.3307692 0.3307692
3  0.3538462 0.3461538 0.3230769 0.3461538 0.3230769 0.3384615 0.3538462
4  0.3692308 0.3461538 0.3538462 0.3692308 0.2923077 0.3615385 0.3769231
5  0.4000000 0.3846154 0.3538462 0.3769231 0.2615385 0.3615385 0.3769231
6  0.4000000 0.3846154 0.3461538 0.3923077 0.2461538 0.4000000 0.4076923
7  0.4230769 0.3692308 0.3538462 0.4307692 0.2538462 0.4307692 0.4230769
8  0.4230769 0.3846154 0.3692308 0.3846154 0.2769231 0.4153846 0.4538462
9  0.3923077 0.4153846 0.3692308 0.4384615 0.3000000 0.4153846 0.4461538
10 0.4384615 0.4615385 0.3846154 0.4230769 0.2923077 0.3846154 0.4307692
11 0.4307692 0.4769231 0.3538462 0.4384615 0.2846154 0.4000000 0.4769231
12 0.4692308 0.4307692 0.3769231 0.4461538 0.2846154 0.4076923 0.4153846
13 0.4692308 0.4076923 0.3692308 0.4230769 0.2846154 0.4461538 0.4000000
14 0.4615385 0.4076923 0.3769231 0.4000000 0.3076923 0.4230769 0.3923077
15 0.4461538 0.4153846 0.4076923 0.3769231 0.3230769 0.4461538 0.3769231
   permut.71 permut.72 permut.73 permut.74 permut.75 permut.76 permut.77
1  0.3153846 0.3230769 0.3153846 0.3307692 0.3230769 0.3230769 0.3230769
2  0.3230769 0.3461538 0.3230769 0.3230769 0.3230769 0.3307692 0.3461538
3  0.3230769 0.3615385 0.3461538 0.3307692 0.3384615 0.3461538 0.3461538
4  0.3615385 0.3923077 0.3384615 0.3384615 0.4307692 0.3615385 0.3923077
5  0.3692308 0.4307692 0.3769231 0.3153846 0.4000000 0.3692308 0.3923077
6  0.3692308 0.4384615 0.3923077 0.3230769 0.4076923 0.3923077 0.4000000
7  0.3461538 0.4076923 0.4153846 0.3615385 0.3692308 0.4230769 0.4307692
8  0.4000000 0.4153846 0.4307692 0.4307692 0.3923077 0.4846154 0.3769231
9  0.4000000 0.4769231 0.4000000 0.4000000 0.4076923 0.4461538 0.4076923
10 0.4153846 0.4615385 0.4000000 0.3923077 0.4076923 0.4461538 0.3923077
11 0.4153846 0.5000000 0.3769231 0.3846154 0.4153846 0.4769231 0.4153846
12 0.4461538 0.4923077 0.4000000 0.3538462 0.3615385 0.4615385 0.4230769
13 0.4384615 0.4923077 0.3923077 0.3153846 0.3692308 0.4384615 0.3846154
14 0.4307692 0.5076923 0.4076923 0.3230769 0.3769231 0.4384615 0.3846154
15 0.3230769 0.5000000 0.4153846 0.3307692 0.4076923 0.3846154 0.3692308
   permut.78 permut.79 permut.80 permut.81 permut.82 permut.83 permut.84
1  0.3230769 0.3307692 0.3230769 0.3230769 0.2538462 0.3307692 0.3153846
2  0.3384615 0.3307692 0.3307692 0.3384615 0.2461538 0.3461538 0.2923077
3  0.3461538 0.3538462 0.3769231 0.3769231 0.2538462 0.3692308 0.2923077
4  0.3538462 0.3846154 0.4076923 0.3769231 0.2846154 0.3769231 0.3230769
5  0.3461538 0.4076923 0.4307692 0.4000000 0.2923077 0.4076923 0.3538462
6  0.3692308 0.4384615 0.4769231 0.4307692 0.2846154 0.4384615 0.3538462
7  0.4000000 0.4230769 0.4307692 0.4461538 0.3538462 0.4307692 0.3384615
8  0.3923077 0.4384615 0.4692308 0.4461538 0.3461538 0.4384615 0.3307692
9  0.4153846 0.4230769 0.4615385 0.5000000 0.3846154 0.4384615 0.3461538
10 0.3923077 0.4153846 0.4692308 0.4846154 0.3769231 0.4230769 0.3692308
11 0.4384615 0.4153846 0.4846154 0.4846154 0.4230769 0.4538462 0.3615385
12 0.4923077 0.4000000 0.5000000 0.5000000 0.4076923 0.4923077 0.3000000
13 0.4538462 0.4307692 0.4615385 0.4846154 0.4307692 0.5076923 0.3076923
14 0.4538462 0.4769231 0.4538462 0.4769231 0.4461538 0.5000000 0.3076923
15 0.4307692 0.4384615 0.4538462 0.4692308 0.4538462 0.4846154 0.3307692
   permut.85 permut.86 permut.87 permut.88 permut.89 permut.90 permut.91
1  0.3307692 0.2846154 0.3153846 0.3230769 0.3230769 0.3461538 0.3153846
2  0.3230769 0.2846154 0.3384615 0.3230769 0.3307692 0.3615385 0.3153846
3  0.3461538 0.3153846 0.3461538 0.3307692 0.3230769 0.3769231 0.3076923
4  0.3000000 0.3769231 0.3230769 0.3692308 0.3769231 0.3923077 0.3153846
5  0.3153846 0.3538462 0.3461538 0.3307692 0.3692308 0.3846154 0.3384615
6  0.3000000 0.3769231 0.3461538 0.3692308 0.3923077 0.3923077 0.3461538
7  0.3384615 0.3615385 0.4000000 0.3846154 0.3846154 0.4153846 0.3384615
8  0.3384615 0.3230769 0.3538462 0.3692308 0.4000000 0.4384615 0.3230769
9  0.3461538 0.3307692 0.3846154 0.4153846 0.3923077 0.4615385 0.3538462
10 0.3153846 0.4000000 0.3538462 0.4153846 0.3846154 0.4538462 0.3615385
11 0.3769231 0.4230769 0.3923077 0.4615385 0.3692308 0.4538462 0.3538462
12 0.3846154 0.4076923 0.4153846 0.4307692 0.4230769 0.4538462 0.4076923
13 0.3692308 0.3923077 0.3923077 0.4230769 0.4230769 0.4692308 0.3923077
14 0.3615385 0.3923077 0.3846154 0.4461538 0.4000000 0.4769231 0.4000000
15 0.3692308 0.4384615 0.4153846 0.4384615 0.4076923 0.4461538 0.3538462
   permut.92 permut.93 permut.94 permut.95 permut.96 permut.97 permut.98
1  0.3230769 0.3230769 0.3230769 0.3461538 0.3538462 0.3230769 0.3230769
2  0.3461538 0.3230769 0.3538462 0.3923077 0.3307692 0.2923077 0.3384615
3  0.3538462 0.3461538 0.3692308 0.3615385 0.3307692 0.2923077 0.3230769
4  0.3923077 0.3538462 0.3692308 0.4000000 0.3615385 0.3076923 0.3307692
5  0.4153846 0.4230769 0.3615385 0.3384615 0.3769231 0.3307692 0.3153846
6  0.4538462 0.4230769 0.3846154 0.3538462 0.4076923 0.3461538 0.3461538
7  0.4000000 0.3692308 0.4076923 0.3538462 0.3923077 0.3538462 0.3923077
8  0.4307692 0.4307692 0.4461538 0.3615385 0.4384615 0.3769231 0.3923077
9  0.4153846 0.3538462 0.4769231 0.3692308 0.4461538 0.3923077 0.4076923
10 0.4615385 0.3769231 0.4461538 0.4076923 0.4307692 0.3538462 0.4461538
11 0.4230769 0.4000000 0.4461538 0.3615385 0.4461538 0.3384615 0.4076923
12 0.3923077 0.4153846 0.4384615 0.4076923 0.4461538 0.3461538 0.4153846
13 0.4153846 0.3923077 0.4615385 0.4384615 0.3923077 0.3538462 0.3923077
14 0.3923077 0.3769231 0.4384615 0.4384615 0.3846154 0.3846154 0.4000000
15 0.4076923 0.4076923 0.4230769 0.4615385 0.4076923 0.3461538 0.4000000
   permut.99 permut.100  err.mean     err.sd   err.sterr
1  0.3230769  0.3307692 0.3222308 0.01458263 0.001458263
2  0.3384615  0.3615385 0.3310000 0.02433639 0.002433639
3  0.3230769  0.3615385 0.3407692 0.02712490 0.002712490
4  0.3384615  0.3538462 0.3594615 0.03248619 0.003248619
5  0.4076923  0.3615385 0.3703077 0.03925400 0.003925400
6  0.3846154  0.4076923 0.3833846 0.04349668 0.004349668
7  0.4153846  0.4153846 0.3950769 0.04031316 0.004031316
8  0.4000000  0.3846154 0.4042308 0.04203842 0.004203842
9  0.4000000  0.3846154 0.4134615 0.04698011 0.004698011
10 0.4076923  0.3307692 0.4178462 0.04729084 0.004729084
11 0.4230769  0.3384615 0.4226923 0.05287022 0.005287022
12 0.4307692  0.3769231 0.4206154 0.04924728 0.004924728
13 0.4384615  0.4000000 0.4179231 0.04809509 0.004809509
14 0.4307692  0.3769231 0.4173077 0.04970026 0.004970026
15 0.4384615  0.3692308 0.4143077 0.05049536 0.005049536

$permut.pc.stepwise.qda$best.p
[1] 10

$permut.pc.stepwise.qda$best.error
[1] 0.3307692

$permut.pc.stepwise.qda$best.pda
$permut.pc.stepwise.qda$best.pda$class
  [1] CTL MET CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL CTL CTL CTL CTL MET
 [19] CTL CTL CTL CTL MET CTL CTL CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] MET CTL MET CTL CTL CTL MET CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL
 [55] MET CTL MET CTL CTL CTL CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL CTL
 [73] MET CTL MET CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL
 [91] CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL CTL MET
[109] MET CTL CTL CTL CTL CTL MET MET CTL CTL CTL CTL MET CTL MET CTL CTL MET
[127] MET CTL CTL CTL
Levels: CTL MET

$permut.pc.stepwise.qda$best.pda$posterior
               CTL          MET
YAL012W 0.98264457 1.735543e-02
YAL038W 0.00845832 9.915417e-01
YAR064W 0.99695474 3.045259e-03
YAR071W 0.94044636 5.955364e-02
YBL005W 0.14149146 8.585085e-01
YBL030C 0.73908099 2.609190e-01
YBR006W 0.89792592 1.020741e-01
YBR018C 0.38205067 6.179493e-01
YBR020W 0.33096371 6.690363e-01
YBR093C 0.98971180 1.028820e-02
YBR115C 0.99017884 9.821163e-03
YBR184W 0.50002698 4.999730e-01
YBR213W 0.88216335 1.178366e-01
YBR296C 0.87745251 1.225475e-01
YCL018W 0.50503086 4.949691e-01
YDL131W 0.99569125 4.308750e-03
YDL182W 0.55712850 4.428715e-01
YDL205C 0.35217649 6.478235e-01
YDL208W 0.67460361 3.253964e-01
YDL210W 0.76942423 2.305758e-01
YDR011W 0.86979914 1.302009e-01
YDR044W 0.97859683 2.140317e-02
YDR234W 0.11903776 8.809622e-01
YDR253C 0.99837377 1.626235e-03
YDR254W 0.90890982 9.109018e-02
YDR285W 0.94479821 5.520179e-02
YDR406W 0.84672656 1.532734e-01
YDR481C 0.79519919 2.048008e-01
YDR502C 0.46353859 5.364614e-01
YEL021W 0.64696472 3.530353e-01
YEL039C 0.74451510 2.554849e-01
YER026C 0.97452298 2.547702e-02
YER086W 0.68568914 3.143109e-01
YER091C 0.25517516 7.448248e-01
YER092W 0.25517516 7.448248e-01
YER125W 0.17014198 8.298580e-01
YER179W 0.06857602 9.314240e-01
YFR030W 0.61781944 3.821806e-01
YFR049W 0.08553637 9.144636e-01
YGL009C 0.70937388 2.906261e-01
YGL073W 0.99326963 6.730366e-03
YGL213C 0.96805460 3.194540e-02
YGR019W 0.16208977 8.379102e-01
YGR044C 0.99998125 1.874518e-05
YGR055W 0.53580904 4.641910e-01
YGR088W 0.99831634 1.683658e-03
YGR121C 0.41369132 5.863087e-01
YGR154C 0.91825505 8.174495e-02
YGR155W 0.90055586 9.944414e-02
YGR157W 0.66450452 3.354955e-01
YGR233C 0.98420335 1.579665e-02
YGR281W 0.99971643 2.835724e-04
YHL022C 0.65182823 3.481718e-01
YHL036W 0.86649803 1.335020e-01
YHL038C 0.23441381 7.655862e-01
YHR007C 0.92989270 7.010730e-02
YHR008C 0.43376012 5.662399e-01
YHR014W 0.83134641 1.686536e-01
YHR037W 0.94292130 5.707870e-02
YHR136C 0.86380507 1.361949e-01
YHR153C 0.86829928 1.317007e-01
YIL015W 0.39013901 6.098610e-01
YIL046W 0.97854687 2.145313e-02
YIL047C 0.97854687 2.145313e-02
YIL072W 0.74487263 2.551274e-01
YIL074C 0.46190846 5.380915e-01
YIR017C 0.80337743 1.966226e-01
YIR018W 0.48596099 5.140390e-01
YIR034C 0.95783331 4.216669e-02
YJL106W 0.61552384 3.844762e-01
YJL117W 0.92114926 7.885074e-02
YJL153C 0.97891699 2.108301e-02
YJL186W 0.37846713 6.215329e-01
YJL187C 0.59225296 4.077470e-01
YJL219W 0.43460690 5.653931e-01
YJR010W 1.00000000 3.396324e-09
YJR048W 0.65788355 3.421165e-01
YJR073C 0.85870074 1.412993e-01
YJR094C 0.38753203 6.124680e-01
YJR137C 1.00000000 9.128963e-17
YJR152W 0.57560515 4.243949e-01
YKL001C 0.99297427 7.025729e-03
YKL182W 0.69425948 3.057405e-01
YKL216W 0.99441774 5.582263e-03
YKR039W 0.85514431 1.448557e-01
YKR068C 0.99930570 6.943025e-04
YKR069W 0.62706877 3.729312e-01
YLR081W 0.61854845 3.814515e-01
YLR142W 0.58366790 4.163321e-01
YLR180W 0.82985677 1.701432e-01
YLR263W 0.73499009 2.650099e-01
YLR303W 0.97473657 2.526343e-02
YLR329W 0.84774322 1.522568e-01
YLR420W 0.45979537 5.402046e-01
YLR438W 0.56673608 4.332639e-01
YML051W 0.91522032 8.477968e-02
YML054C 0.85173537 1.482646e-01
YML075C 0.99997669 2.330909e-05
YML123C 0.99984237 1.576317e-04
YMR061W 0.99176257 8.237427e-03
YMR108W 0.98895271 1.104729e-02
YMR133W 0.55220350 4.477965e-01
YMR301C 0.99784172 2.158276e-03
YNL052W 0.68493886 3.150611e-01
YNL104C 0.99385590 6.144096e-03
YNL142W 0.96476267 3.523733e-02
YNL210W 0.89247442 1.075256e-01
YNL241C 0.45068896 5.493110e-01
YNL259C 0.36121065 6.387893e-01
YNL260C 0.95138281 4.861719e-02
YNL277W 0.63442557 3.655744e-01
YNR001C 0.69629032 3.037097e-01
YNR050C 0.96822405 3.177595e-02
YOL006C 0.76853980 2.314602e-01
YOR065W 0.08494369 9.150563e-01
YOR120W 0.06150316 9.384968e-01
YOR136W 0.72980708 2.701929e-01
YOR153W 0.60301653 3.969835e-01
YOR284W 0.75217963 2.478204e-01
YOR328W 0.76287224 2.371278e-01
YOR351C 0.08794585 9.120542e-01
YOR367W 0.62665540 3.733446e-01
YOR375C 0.10438542 8.956146e-01
YPL111W 0.99038692 9.613082e-03
YPL231W 0.93769221 6.230779e-02
YPL250C 0.21928350 7.807165e-01
YPR065W 0.18666069 8.133393e-01
YPR138C 0.57710500 4.228950e-01
YPR145W 0.52853969 4.714603e-01
YPR167C 0.63897055 3.610295e-01

$permut.pc.stepwise.qda$best.pda$call
qda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$permut.pc.stepwise.qda$best.pda$training.label
  [1] CTL MET MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL CTL MET
 [19] MET MET MET CTL MET MET CTL CTL CTL CTL MET MET MET MET CTL MET MET MET
 [37] MET CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL CTL CTL MET MET
 [55] CTL CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL
 [73] CTL MET MET CTL MET CTL CTL MET CTL CTL MET CTL CTL MET CTL CTL CTL MET
 [91] CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL CTL CTL CTL CTL
[109] CTL CTL CTL MET CTL MET MET CTL CTL CTL CTL CTL CTL CTL CTL MET CTL MET
[127] MET MET CTL MET
Levels: CTL MET

$permut.pc.stepwise.qda$best.pda$pda.method
[1] "qda"

$permut.pc.stepwise.qda$best.pda$loo
[1] TRUE

$permut.pc.stepwise.qda$best.pda$validation
[1] "LOO"

$permut.pc.stepwise.qda$best.pda$confusion
      true
object CTL MET
   CTL  72  27
   MET  16  15
attr(,"error")
[1] 0.3307692



$max.p
[1] 15

$errors
   stepwise.lda pc.stepwise.lda permut.stepwise.lda permut.pc.stepwise.lda
1    0.08461538      0.15384615           0.3210000              0.3196154
2    0.04615385      0.11538462           0.3183846              0.3152308
3    0.04615385      0.06923077           0.3157692              0.3118462
4    0.03846154      0.06153846           0.3140769              0.3103077
5    0.03846154      0.03846154           0.3136154              0.3095385
6    0.02307692      0.03076923           0.3123077              0.3100000
7    0.02307692      0.03076923           0.3138462              0.3129231
8    0.03076923      0.03076923           0.3150000              0.3156923
9    0.03076923      0.03076923           0.3173846              0.3196154
10   0.03076923      0.03076923           0.3233077              0.3259231
11   0.02307692      0.03846154           0.3309231              0.3324615
12   0.03076923      0.03846154           0.3395385              0.3388462
13   0.03846154      0.04615385           0.3493077              0.3489231
14   0.04615385      0.04615385           0.3611538              0.3597692
15   0.04615385      0.04615385           0.3784615              0.3776154
   stepwise.qda pc.stepwise.qda permut.stepwise.qda permut.pc.stepwise.qda
1    0.08461538      0.16153846           0.3272308              0.3222308
2    0.03846154      0.11538462           0.3356154              0.3310000
3    0.04615385      0.06153846           0.3456923              0.3407692
4    0.03846154      0.05384615           0.3560769              0.3594615
5    0.03846154      0.06153846           0.3707692              0.3703077
6    0.04615385      0.04615385           0.3833077              0.3833846
7    0.03846154      0.06153846           0.3985385              0.3950769
8    0.04615385      0.03076923           0.4089231              0.4042308
9    0.04615385      0.03076923           0.4121538              0.4134615
10   0.03846154      0.03076923           0.4173846              0.4178462
11   0.03846154      0.03846154           0.4177692              0.4226923
12   0.01538462      0.06923077           0.4145385              0.4206154
13   0.03846154      0.06923077           0.4137692              0.4179231
14   0.03076923      0.03846154           0.4144615              0.4173077
15   0.09230769      0.09230769           0.4120000              0.4143077

$legend.labels
[1] "LDA"                   "LDA with PC"           "LDA, permuted"        
[4] "LDA with PC, permuted" "QDA"                   "QDA with PC"          
[7] "QDA, permuted"         "QDA with PC, permuted"

$confusion.table
                        p      error CTL.CTL CTL.MET MET.CTL MET.MET
stepwise.lda           11 0.02307692      87       1       2      40
pc.stepwise.lda        10 0.03076923      85       3       1      41
permut.stepwise.lda    10 0.30000000      80       8      31      11
permut.pc.stepwise.lda  8 0.29230769      85       3      35       7
stepwise.qda           12 0.01538462      87       1       1      41
pc.stepwise.qda        10 0.03076923      86       2       2      40
permut.stepwise.qda     1 0.32307692      88       0      42       0
permut.pc.stepwise.qda 10 0.33076923      72      16      27      15

$best.errors
[1] 0.01538462

$best.vars
 [1] 10 13  3  1  2 14  5  9 15  4  6  8

$best.method
[1] "stepwise.qda"

$best.pda
$best.pda$max.p
[1] 15

$best.pda$errors
 [1] 0.08461538 0.03846154 0.04615385 0.03846154 0.03846154 0.04615385
 [7] 0.03846154 0.04615385 0.04615385 0.03846154 0.03846154 0.01538462
[13] 0.03846154 0.03076923 0.09230769

$best.pda$confusion.table
   step              error added.var added.var.name CTL.CTL CTL.MET MET.CTL
1     1 0.0846153846153846        10        Met4p.1      83       5       6
2     2 0.0384615384615384        13       Met31p.1      84       4       1
3     3 0.0461538461538461         3        Pho4p.3      83       5       1
4     4 0.0384615384615384         1        Pho4p.1      84       4       1
5     5 0.0384615384615384         2        Pho4p.2      84       4       1
6     6 0.0461538461538461        14       Met31p.2      83       5       1
7     7 0.0384615384615384         5      Pho4p.g.2      84       4       1
8     8 0.0461538461538461         9      Pho4p.t.3      84       4       2
9     9 0.0461538461538461        15       Met31p.3      85       3       3
10   10 0.0384615384615384         4      Pho4p.g.1      86       2       3
11   11 0.0384615384615384         6      Pho4p.g.3      85       3       2
12   12 0.0153846153846153         8      Pho4p.t.2      87       1       1
13   13 0.0384615384615384        12        Met4p.3      86       2       3
14   14 0.0307692307692308         7      Pho4p.t.1      87       1       3
15   15 0.0923076923076923        11        Met4p.2      85       3       9
   MET.MET
1       36
2       41
3       41
4       41
5       41
6       41
7       41
8       40
9       39
10      39
11      40
12      41
13      39
14      39
15      33

$best.pda$best.pda
$best.pda$best.pda$class
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET MET CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL CTL
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$best.pda$best.pda$posterior
                 CTL          MET
YAL012W 7.202461e-08 9.999999e-01
YAL038W 9.999300e-01 6.997083e-05
YAR064W 1.496146e-02 9.850385e-01
YAR071W 1.000000e+00 1.373320e-09
YBL005W 1.000000e+00 1.500033e-09
YBL030C 9.999999e-01 1.031549e-07
YBR006W 7.688539e-01 2.311461e-01
YBR018C 9.999924e-01 7.600492e-06
YBR020W 9.999997e-01 3.230815e-07
YBR093C 9.999999e-01 5.244238e-08
YBR115C 9.997811e-01 2.189375e-04
YBR184W 8.476618e-01 1.523382e-01
YBR213W 3.662642e-01 6.337358e-01
YBR296C 9.971081e-01 2.891904e-03
YCL018W 9.999417e-01 5.828979e-05
YDL131W 1.000000e+00 1.518676e-10
YDL182W 1.000000e+00 2.455439e-12
YDL205C 1.000000e+00 4.986530e-10
YDL208W 3.517858e-02 9.648214e-01
YDL210W 9.980553e-01 1.944695e-03
YDR011W 9.994488e-01 5.511543e-04
YDR044W 1.000000e+00 3.276413e-16
YDR234W 9.998309e-01 1.690958e-04
YDR253C 1.334734e-06 9.999987e-01
YDR254W 1.062946e-06 9.999989e-01
YDR285W 9.993113e-01 6.886802e-04
YDR406W 1.000000e+00 3.126804e-09
YDR481C 6.380109e-01 3.619891e-01
YDR502C 6.714038e-05 9.999329e-01
YEL021W 9.999998e-01 2.035141e-07
YEL039C 1.000000e+00 3.165585e-09
YER026C 9.999654e-01 3.462551e-05
YER086W 1.000000e+00 3.045688e-09
YER091C 6.270054e-06 9.999937e-01
YER092W 6.270054e-06 9.999937e-01
YER125W 9.267963e-06 9.999907e-01
YER179W 9.999748e-01 2.521930e-05
YFR030W 4.085906e-04 9.995914e-01
YFR049W 2.785494e-02 9.721451e-01
YGL009C 9.999974e-01 2.604234e-06
YGL073W 1.000000e+00 3.607104e-16
YGL213C 1.000000e+00 5.614938e-09
YGR019W 9.999946e-01 5.392780e-06
YGR044C 9.999757e-01 2.429216e-05
YGR055W 2.561080e-01 7.438920e-01
YGR088W 1.000000e+00 8.641576e-09
YGR121C 1.000000e+00 5.974233e-12
YGR154C 1.071941e-05 9.999893e-01
YGR155W 1.533040e-06 9.999985e-01
YGR157W 8.553834e-03 9.914462e-01
YGR233C 7.866686e-01 2.133314e-01
YGR281W 9.044788e-01 9.552124e-02
YHL022C 9.999549e-01 4.507268e-05
YHL036W 1.060124e-05 9.999894e-01
YHL038C 1.060124e-05 9.999894e-01
YHR007C 9.999943e-01 5.672409e-06
YHR008C 9.999990e-01 9.518803e-07
YHR014W 9.984688e-01 1.531152e-03
YHR037W 9.999978e-01 2.201537e-06
YHR136C 5.198324e-01 4.801676e-01
YHR153C 9.821472e-01 1.785280e-02
YIL015W 9.906093e-01 9.390731e-03
YIL046W 2.002810e-01 7.997190e-01
YIL047C 2.002810e-01 7.997190e-01
YIL072W 9.998447e-01 1.553013e-04
YIL074C 3.563335e-03 9.964367e-01
YIR017C 5.220356e-04 9.994780e-01
YIR018W 8.722530e-05 9.999128e-01
YIR034C 1.000000e+00 1.963460e-09
YJL106W 9.999680e-01 3.200889e-05
YJL117W 9.780687e-01 2.193125e-02
YJL153C 9.931258e-01 6.874202e-03
YJL186W 1.527915e-04 9.998472e-01
YJL187C 2.355331e-03 9.976447e-01
YJL219W 1.000000e+00 2.599853e-08
YJR010W 5.210873e-07 9.999995e-01
YJR048W 9.999406e-01 5.941945e-05
YJR073C 9.991740e-01 8.260136e-04
YJR094C 9.999981e-01 1.927865e-06
YJR137C 4.111254e-01 5.888746e-01
YJR152W 9.999432e-01 5.681386e-05
YKL001C 8.869188e-05 9.999113e-01
YKL182W 9.999988e-01 1.244224e-06
YKL216W 1.000000e+00 1.732224e-11
YKR039W 1.000000e+00 1.423793e-14
YKR068C 2.507382e-06 9.999975e-01
YKR069W 1.069615e-05 9.999893e-01
YLR081W 8.570118e-01 1.429882e-01
YLR142W 9.914573e-01 8.542717e-03
YLR180W 3.525602e-01 6.474398e-01
YLR263W 9.998193e-01 1.806619e-04
YLR303W 9.299186e-09 1.000000e+00
YLR329W 9.999999e-01 5.842145e-08
YLR420W 9.999991e-01 9.312866e-07
YLR438W 1.000000e+00 1.584955e-08
YML051W 9.999999e-01 7.298088e-08
YML054C 9.999977e-01 2.317854e-06
YML075C 1.000000e+00 9.692434e-09
YML123C 1.000000e+00 4.883403e-31
YMR061W 5.247954e-06 9.999948e-01
YMR108W 1.000000e+00 6.193906e-13
YMR133W 9.995377e-01 4.623205e-04
YMR301C 1.081901e-05 9.999892e-01
YNL052W 9.999821e-01 1.787254e-05
YNL104C 9.953522e-01 4.647799e-03
YNL142W 1.000000e+00 9.367595e-11
YNL210W 9.993442e-01 6.558137e-04
YNL241C 9.999999e-01 8.146160e-08
YNL259C 4.911031e-08 1.000000e+00
YNL260C 1.219925e-09 1.000000e+00
YNL277W 5.683917e-08 9.999999e-01
YNR001C 9.999963e-01 3.742547e-06
YNR050C 9.999823e-01 1.769364e-05
YOL006C 1.000000e+00 1.363555e-08
YOR065W 9.980469e-01 1.953081e-03
YOR120W 9.922830e-01 7.717024e-03
YOR136W 9.196310e-03 9.908037e-01
YOR153W 9.999992e-01 8.251608e-07
YOR284W 9.020458e-03 9.909795e-01
YOR328W 1.000000e+00 8.150705e-09
YOR351C 9.999600e-01 3.996698e-05
YOR367W 1.308411e-03 9.986916e-01
YOR375C 9.999914e-01 8.594168e-06
YPL111W 9.999985e-01 1.514347e-06
YPL231W 9.634432e-01 3.655680e-02
YPL250C 6.297260e-02 9.370274e-01
YPR065W 8.534519e-01 1.465481e-01
YPR138C 1.000000e+00 2.735356e-09
YPR145W 9.999999e-01 1.084195e-07
YPR167C 1.324029e-02 9.867597e-01

$best.pda$best.pda$call
qda(x = data.training, grouping = labels.training, CV = loo, 
    na.action = na.omit)

$best.pda$best.pda$training.names
  [1] "YAL012W" "YAL038W" "YAR064W" "YAR071W" "YBL005W" "YBL030C" "YBR006W"
  [8] "YBR018C" "YBR020W" "YBR093C" "YBR115C" "YBR184W" "YBR213W" "YBR296C"
 [15] "YCL018W" "YDL131W" "YDL182W" "YDL205C" "YDL208W" "YDL210W" "YDR011W"
 [22] "YDR044W" "YDR234W" "YDR253C" "YDR254W" "YDR285W" "YDR406W" "YDR481C"
 [29] "YDR502C" "YEL021W" "YEL039C" "YER026C" "YER086W" "YER091C" "YER092W"
 [36] "YER125W" "YER179W" "YFR030W" "YFR049W" "YGL009C" "YGL073W" "YGL213C"
 [43] "YGR019W" "YGR044C" "YGR055W" "YGR088W" "YGR121C" "YGR154C" "YGR155W"
 [50] "YGR157W" "YGR233C" "YGR281W" "YHL022C" "YHL036W" "YHL038C" "YHR007C"
 [57] "YHR008C" "YHR014W" "YHR037W" "YHR136C" "YHR153C" "YIL015W" "YIL046W"
 [64] "YIL047C" "YIL072W" "YIL074C" "YIR017C" "YIR018W" "YIR034C" "YJL106W"
 [71] "YJL117W" "YJL153C" "YJL186W" "YJL187C" "YJL219W" "YJR010W" "YJR048W"
 [78] "YJR073C" "YJR094C" "YJR137C" "YJR152W" "YKL001C" "YKL182W" "YKL216W"
 [85] "YKR039W" "YKR068C" "YKR069W" "YLR081W" "YLR142W" "YLR180W" "YLR263W"
 [92] "YLR303W" "YLR329W" "YLR420W" "YLR438W" "YML051W" "YML054C" "YML075C"
 [99] "YML123C" "YMR061W" "YMR108W" "YMR133W" "YMR301C" "YNL052W" "YNL104C"
[106] "YNL142W" "YNL210W" "YNL241C" "YNL259C" "YNL260C" "YNL277W" "YNR001C"
[113] "YNR050C" "YOL006C" "YOR065W" "YOR120W" "YOR136W" "YOR153W" "YOR284W"
[120] "YOR328W" "YOR351C" "YOR367W" "YOR375C" "YPL111W" "YPL231W" "YPL250C"
[127] "YPR065W" "YPR138C" "YPR145W" "YPR167C"

$best.pda$best.pda$training.label
  [1] MET CTL MET CTL CTL CTL CTL CTL CTL CTL CTL CTL MET CTL CTL CTL CTL CTL
 [19] MET CTL CTL CTL CTL MET MET CTL CTL CTL MET CTL CTL CTL CTL MET MET MET
 [37] CTL MET MET CTL CTL CTL CTL CTL MET CTL CTL MET MET CTL CTL CTL CTL MET
 [55] MET CTL CTL CTL CTL CTL CTL CTL MET MET CTL MET MET MET CTL CTL CTL CTL
 [73] MET MET CTL MET CTL CTL CTL MET CTL MET CTL CTL CTL MET MET CTL CTL MET
 [91] CTL MET CTL CTL CTL CTL CTL CTL CTL MET CTL CTL MET CTL CTL CTL CTL MET
[109] MET MET MET CTL CTL CTL CTL CTL MET CTL MET CTL CTL MET CTL CTL CTL MET
[127] CTL CTL CTL MET
Levels: CTL MET

$best.pda$best.pda$pda.method
[1] "qda"

$best.pda$best.pda$loo
[1] TRUE

$best.pda$best.pda$validation
[1] "LOO"

$best.pda$best.pda$confusion
      true
object CTL MET
   CTL  87   1
   MET   1  41
attr(,"error")
[1] 0.01538462


$best.pda$best.p
[1] 12

$best.pda$best.vars
 [1] 10 13  3  1  2 14  5  9 15  4  6  8

$best.pda$best.var.names
 [1] "Met4p.1"   "Met31p.1"  "Pho4p.3"   "Pho4p.1"   "Pho4p.2"   "Met31p.2" 
 [7] "Pho4p.g.2" "Pho4p.t.3" "Met31p.3"  "Pho4p.g.1" "Pho4p.g.3" "Pho4p.t.2"

$best.pda$best.error
[1] 0.01538462

$best.pda$pc.transform
[1] FALSE

$best.pda$var.order
 [1] 10 13  3  1  2 14  5  9 15  4  6  8 12  7 11


