; matrix-quality -v 2 -ms data/yeast_study_case/prodoric/FNR_bacillus/FNR_bacillus.infogibbs -matrix_format infogibbs -seq allup-noorf /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -perm allup-noorf 5 -roc_ref theor -img_format png,pdf -html_title ' Bacillus_subtilis Matrix FNR_bacillus.infogibbs ' -graph_option '-title1 FNR' -graph_option '-title2 FNR_bacillus.infogibbs' -graph_option '-xgstep1 5 -xgstep2 1' -graph_option '-ymin 1.0e-7 -ymax 1' -graph_option '-xmin -50 -xmax 30' -roc_option '-gstep1 0.1 -gstep2 0.05' -roc_option '-title1 FNR' -roc_option '-title2 FNR_bacillus.infogibbs ' -2str -pseudo 1 -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz -th_prior /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs ; Sequence sets (name, permutations, file); allup-noorf 5 /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ; matrix_sites 0 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_sites.fasta ; LOO partial matrices ; FNR_bacillus_leftout_1 6 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_1.tab ; FNR_bacillus_leftout_2 6 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_2.tab ; FNR_bacillus_leftout_3 6 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_3.tab ; FNR_bacillus_leftout_4 5 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_4.tab ; FNR_bacillus_leftout_5 6 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_5.tab ; FNR_bacillus_leftout_6 5 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_6.tab ; FNR_bacillus_leftout_7 6 sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_partial_matrix_7.tab ; 2010_03_26.124301 running matrix-scan ; Sequence type matrix_sites_loo ; 2010_03_26.124317 Computing score distribution ; Sequence type allup-noorf ; Sequence type allup-noorf ; Sequence file /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -m data/yeast_study_case/prodoric/FNR_bacillus/FNR_bacillus.infogibbs -matrix_format infogibbs -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_score_distrib.tab ; 2010_03_26.124847 Computing score distribution ; Sequence type allup-noorf_perm_col_1 ; Sequence type allup-noorf_perm_col_1 ; Sequence file /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -m /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_1.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_1_score_distrib.tab ; 2010_03_26.125433 Computing score distribution ; Sequence type allup-noorf_perm_col_2 ; Sequence type allup-noorf_perm_col_2 ; Sequence file /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -m /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_2.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_2_score_distrib.tab ; 2010_03_26.130041 Computing score distribution ; Sequence type allup-noorf_perm_col_3 ; Sequence type allup-noorf_perm_col_3 ; Sequence file /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -m /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_3.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_3_score_distrib.tab ; 2010_03_26.130650 Computing score distribution ; Sequence type allup-noorf_perm_col_4 ; Sequence type allup-noorf_perm_col_4 ; Sequence file /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -m /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_4.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_4_score_distrib.tab ; 2010_03_26.131256 Computing score distribution ; Sequence type allup-noorf_perm_col_5 ; Sequence type allup-noorf_perm_col_5 ; Sequence file /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas -m /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_5.tab -matrix_format tab -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_5_score_distrib.tab ; 2010_03_26.131853 Computing score distribution ; Sequence type matrix_sites ; Sequence type matrix_sites ; Sequence file /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_sites.fasta ; Type-specific options -1str -uth rank_pm 1 ;Command: /Users/amedina/local/rsa-tools/perl-scripts/matrix-scan -v 2 -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_sites.fasta -m data/yeast_study_case/prodoric/FNR_bacillus/FNR_bacillus.infogibbs -matrix_format infogibbs -return sites -decimals 1 -2str -bgfile /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz -1str -uth rank_pm 1 | grep -v '^;' | grep -v '^#' | cut -f 8 | /Users/amedina/local/rsa-tools/perl-scripts/classfreq -v 1 -ci 0.1 -min -33.0 | cut -f 1,4,5,6,9 > /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_matrix_sites_score_distrib.tab ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.tab -format png -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9,10 -ymin 0 -ymax 1 -xgstep1 5 -xgstep2 1 -ygstep1 0.1 -ygstep2 0.02 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 800 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.png ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.tab -format png -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9,10 -xgstep1 5 -xgstep2 1 -ymax 1 -ylog 10 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 800 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa_logy.png ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -xlog 10 -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.tab -format png -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 2 -ycol 2,3,4,5,6,7,8,9,10 -ygstep1 0.1 -ygstep2 0.02 -ymax 1 -xmax 1 -title1 'FNR_bacillus' -legend -xsize 400 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -gstep1 0.1 -gstep2 0.05 -title1 FNR -title2 FNR_bacillus.infogibbs -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa_roc_xlog.png -xleg1 'FPR (Reference = theor)' -yleg1 'Site Sn + other distributions' ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa.tab -format png -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9 -ymin 0 -ymax 1 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 400 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa.png ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa.tab -format png -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9 -ymax 1 -ylog 10 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 400 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa_logy.png ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.tab -format pdf -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9,10 -ymin 0 -ymax 1 -xgstep1 5 -xgstep2 1 -ygstep1 0.1 -ygstep2 0.02 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 800 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.pdf ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.tab -format pdf -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9,10 -xgstep1 5 -xgstep2 1 -ymax 1 -ylog 10 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 800 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa_logy.pdf ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -xlog 10 -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa.tab -format pdf -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 2 -ycol 2,3,4,5,6,7,8,9,10 -ygstep1 0.1 -ygstep2 0.02 -ymax 1 -xmax 1 -title1 'FNR_bacillus' -legend -xsize 400 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -gstep1 0.1 -gstep2 0.05 -title1 FNR -title2 FNR_bacillus.infogibbs -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa_roc_xlog.pdf -xleg1 'FPR (Reference = theor)' -yleg1 'Site Sn + other distributions' ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa.tab -format pdf -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9 -ymin 0 -ymax 1 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 400 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa.pdf ; ; XYgraph command /Users/amedina/local/rsa-tools/perl-scripts/XYgraph -i /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa.tab -format pdf -lines -pointsize 0 -title1 FNR -title2 FNR_bacillus.infogibbs -xgstep1 5 -xgstep2 1 -ymin 1.0e-7 -ymax 1 -xmin -50 -xmax 30 -xcol 1 -ycol 2,3,4,5,6,7,8,9 -ymax 1 -ylog 10 -gp 'set size ratio 0.5' -title1 'FNR_bacillus' -legend -xsize 400 -ysize 400 -xleg1 'matrix score' -yleg1 'Frequency (inverse cumulative) ' -o /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa_logy.pdf ; Input files ; bg_file /Users/amedina/local/rsa-tools/data/genomes/Bacillus_subtilis/oligo-frequencies/2nt_upstream-noorf_Bacillus_subtilis-ovlp-2str.freq.gz ; matrix data/yeast_study_case/prodoric/FNR_bacillus/FNR_bacillus.infogibbs ; matrix_sites data/yeast_study_case/prodoric/FNR_bacillus/FNR_bacillus.infogibbs ; Sequence files ; allup-noorf /Users/amedina/work_area/matrix_eval/data/sequences/allup/allup_noorf_Bacillus_subtilis.fas ; matrix_sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_sites.fasta ; Output files ; allup-noorf /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_score_distrib.tab ; allup-noorf_matrix_perm_col_all /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_allup-noorf_matrix_perm_col_all_5.tab ; allup-noorf_perm_col_1 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_1_score_distrib.tab ; allup-noorf_perm_col_2 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_2_score_distrib.tab ; allup-noorf_perm_col_3 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_3_score_distrib.tab ; allup-noorf_perm_col_4 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_4_score_distrib.tab ; allup-noorf_perm_col_5 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_5_score_distrib.tab ; distrib_compa /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_score_distrib_compa ; index /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_index.html ; log /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_log.txt ; matrix_info /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_info.txt ; matrix_logo /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_FNR_bacillus_logo ; matrix_perm_col_1 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_1.tab ; matrix_perm_col_2 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_2.tab ; matrix_perm_col_3 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_3.tab ; matrix_perm_col_4 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_4.tab ; matrix_perm_col_5 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_perm_col_5.tab ; matrix_rc /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_rc ; matrix_rc_logo /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_FNR_bacillus_logo_rc ; matrix_sites /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_matrix_sites_score_distrib.tab ; matrix_sites_loo /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_sites_loo.tab ; matrix_sites_loo_distrib /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_matrix_sites_loo_score_distrib.tab ; matrix_sites_matrix_perm_col_all /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix_sites_matrix_perm_col_all_.tab ; matrix_tab /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_matrix.tab ; prefix /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs ; th_distrib_compa /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theorical_score_distrib_compa ; theoretical_distrib /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_theor_score_distrib.tab ; Directories ; output /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR ; Matrix permutations per sequence type ; allup-noorf 5 ; matrix_sites 0 ; Distributions ; 1 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_matrix_sites_loo_score_distrib.tab ; 2 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_score_distrib.tab ; 3 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_1_score_distrib.tab ; 4 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_2_score_distrib.tab ; 5 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_3_score_distrib.tab ; 6 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_4_score_distrib.tab ; 7 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_allup-noorf_perm_col_5_score_distrib.tab ; 8 /Users/amedina/work_area/matrix_eval/results/Eukarya/matrix_quality20100324/FNR/FNR_bacillus.infogibbs_scan_matrix_sites_score_distrib.tab ; Job started 2010_03_26.124240 ; Job done 2010_03_26.131904