Unraveling networks of co-regulated genes on the sole basis of genome sequences

Data files

Infered network

• All discovered motifs (TAB)
• Complete infered network (TAB - with all metrics / GML (dpbits))
• Infered network restricted to edges between the STRING co-expression dataset genes(TAB / GML)
• Infered network restricted to edges between the genes of the annotated regulons reference dataset (TAB / GML)
• Infered network restricted to edges between the genes of the annotated regulons reference dataset (GML)

Annotated regulons (Simonis et al (2004))

• factor-gene network (ORF ID) (TAB / GML)
• gene-gene network (ORF ID) (TAB / GML)
• factor-gene network (name ID) (TAB / GML)
• gene-gene network (name ID) (TAB / GML)

Transcription factor gene association (Harbison et al (2004))

• factor-gene network (TAB / GML)
• gene-gene network (TAB / GML)

STRING co-expression network

Figures

• Figure 1
• Figure 2
• Figure 3
• Figure 4
• Figure 5
• Figure 6
• Figure S1
• Figure S2
• Figure S3
• Figure S4