One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 /home/rsat/rsa-tools/public_html/data/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_FlyFactorSurvey

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift4 ; 12 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m2_shift4 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=4; ncol=15; ----waAACAyAAww ; Alignment reference a | 0 0 0 0 2194 2297 6636 6636 0 6636 0 6636 6636 2283 2203 c | 0 0 0 0 1355 1342 0 0 5129 0 3468 0 0 1367 1387 g | 0 0 0 0 1234 1358 0 0 0 0 1211 0 0 1096 1135 t | 0 0 0 0 1853 1639 0 0 1507 0 1957 0 0 1890 1911

Mirr_Cell_FBgn0014343_shift2 (Mirr_Cell_FBgn0014343) 0.921 0.425 5.397 0.422 0.921 0.444 0.963 1 5 7 5 1 1 1 3.000 1
; oligos_7nt_mkv5_m2 versus Mirr_Cell_FBgn0014343; m=1/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 3; --waawAACA----- ; cor=0.921; Ncor=0.425; logoDP=5.397; NIcor=0.422; NsEucl=0.921; SSD=0.444; NSW=0.963; rcor=1; rNcor=5; rlogoDP=7; rNIcor=5; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.000; match_rank=1 a | 0 0 18 18 22 20 29 41 0 41 0 0 0 0 0 c | 0 0 6 4 7 1 0 0 41 0 0 0 0 0 0 g | 0 0 6 10 6 1 2 0 0 0 0 0 0 0 0 t | 0 0 11 9 6 19 10 0 0 0 0 0 0 0 0

Ara_SOLEXA_FBgn0015904_shift4 (Ara_SOLEXA_FBgn0015904) 0.906 0.494 5.171 0.484 0.916 0.507 0.958 3 1 8 1 4 4 4 3.571 2
; oligos_7nt_mkv5_m2 versus Ara_SOLEXA_FBgn0015904; m=2/11; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 3.5714; ----awwACA----- ; cor=0.906; Ncor=0.494; logoDP=5.171; NIcor=0.484; NsEucl=0.916; SSD=0.507; NSW=0.958; rcor=3; rNcor=1; rlogoDP=8; rNIcor=1; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=3.571; match_rank=2 a | 0 0 0 0 155 97 193 313 0 313 0 0 0 0 0 c | 0 0 0 0 36 0 0 0 313 0 0 0 0 0 0 g | 0 0 0 0 44 45 38 0 0 0 0 0 0 0 0 t | 0 0 0 0 78 171 82 0 0 0 0 0 0 0 0

Caup_Cell_FBgn0015919_shift2 (Caup_Cell_FBgn0015919) 0.917 0.423 5.406 0.419 0.920 0.465 0.961 2 6 6 6 2 2 2 3.714 3
; oligos_7nt_mkv5_m2 versus Caup_Cell_FBgn0015919; m=3/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 3.7143; --cwwtAACA----- ; cor=0.917; Ncor=0.423; logoDP=5.406; NIcor=0.419; NsEucl=0.920; SSD=0.465; NSW=0.961; rcor=2; rNcor=6; rlogoDP=6; rNIcor=6; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=3.714; match_rank=3 a | 0 0 4 9 8 4 14 19 0 19 0 0 0 0 0 c | 0 0 9 0 0 1 0 0 19 0 0 0 0 0 0 g | 0 0 2 3 4 2 2 0 0 0 0 0 0 0 0 t | 0 0 4 7 7 12 3 0 0 0 0 0 0 0 0

Mirr_SOLEXA_FBgn0014343_shift4 (Mirr_SOLEXA_FBgn0014343) 0.906 0.494 5.077 0.481 0.917 0.491 0.959 4 2 9 2 3 3 3 3.714 4
; oligos_7nt_mkv5_m2 versus Mirr_SOLEXA_FBgn0014343; m=4/11; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 3.7143; ----wwwACA----- ; cor=0.906; Ncor=0.494; logoDP=5.077; NIcor=0.481; NsEucl=0.917; SSD=0.491; NSW=0.959; rcor=4; rNcor=2; rlogoDP=9; rNIcor=2; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=3.714; match_rank=4 a | 0 0 0 0 550 410 782 1415 0 1415 0 0 0 0 0 c | 0 0 0 0 158 93 0 0 1415 0 0 0 0 0 0 g | 0 0 0 0 327 282 204 0 0 0 0 0 0 0 0 t | 0 0 0 0 380 630 429 0 0 0 0 0 0 0 0

Ara_Cell_FBgn0015904_shift2 (Ara_Cell_FBgn0015904) 0.896 0.414 5.472 0.409 0.909 0.597 0.950 5 8 5 8 5 5 5 5.857 5
; oligos_7nt_mkv5_m2 versus Ara_Cell_FBgn0015904; m=5/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 5.8571; --raAwwACA----- ; cor=0.896; Ncor=0.414; logoDP=5.472; NIcor=0.409; NsEucl=0.909; SSD=0.597; NSW=0.950; rcor=5; rNcor=8; rlogoDP=5; rNIcor=8; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=5.857; match_rank=5 a | 0 0 12 16 24 14 23 34 0 34 0 0 0 0 0 c | 0 0 5 7 1 0 0 0 34 0 0 0 0 0 0 g | 0 0 10 6 1 5 0 0 0 0 0 0 0 0 0 t | 0 0 7 5 8 15 11 0 0 0 0 0 0 0 0

Caup_SOLEXA_FBgn0015919_shift4 (Caup_SOLEXA_FBgn0015919) 0.880 0.480 4.998 0.465 0.907 0.623 0.948 7 3 10 3 6 6 6 5.857 6
; oligos_7nt_mkv5_m2 versus Caup_SOLEXA_FBgn0015919; m=6/11; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 5.8571; ----wtwACA----- ; cor=0.880; Ncor=0.480; logoDP=4.998; NIcor=0.465; NsEucl=0.907; SSD=0.623; NSW=0.948; rcor=7; rNcor=3; rlogoDP=10; rNIcor=3; rNsEucl=6; rSSD=6; rNSW=6; rank_mean=5.857; match_rank=6 a | 0 0 0 0 999 577 1415 2904 2 2904 0 0 0 0 0 c | 0 0 0 0 460 201 0 0 2902 0 0 0 0 0 0 g | 0 0 0 0 626 639 511 0 0 0 0 0 0 0 0 t | 0 0 0 0 819 1487 978 0 0 0 0 0 0 0 0

slp2_SANGER_5_FBgn0004567_shift3 (slp2_SANGER_5_FBgn0004567) 0.773 0.451 6.714 0.451 0.863 1.841 0.869 10 4 1 4 10 11 11 7.286 7
; oligos_7nt_mkv5_m2 versus slp2_SANGER_5_FBgn0004567; m=7/11; ncol2=8; w=7; offset=-1; strand=D; shift=3; score= 7.2857; ---rTAAACAa---- ; cor=0.773; Ncor=0.451; logoDP=6.714; NIcor=0.451; NsEucl=0.863; SSD=1.841; NSW=0.869; rcor=10; rNcor=4; rlogoDP=1; rNIcor=4; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=7.286; match_rank=7 a | 0 0 0 6 0 18 18 18 0 18 11 0 0 0 0 c | 0 0 0 0 1 0 0 0 18 0 3 0 0 0 0 g | 0 0 0 12 0 0 0 0 0 0 3 0 0 0 0 t | 0 0 0 0 17 0 0 0 0 0 1 0 0 0 0

fd64A_SANGER_5_FBgn0004895_shift2 (fd64A_SANGER_5_FBgn0004895) 0.887 0.409 5.990 0.393 0.896 0.780 0.935 6 10 4 9 8 7 7 7.286 8
; oligos_7nt_mkv5_m2 versus fd64A_SANGER_5_FBgn0004895; m=8/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 7.2857; --tvtAAACA----- ; cor=0.887; Ncor=0.409; logoDP=5.990; NIcor=0.393; NsEucl=0.896; SSD=0.780; NSW=0.935; rcor=6; rNcor=10; rlogoDP=4; rNIcor=9; rNsEucl=8; rSSD=7; rNSW=7; rank_mean=7.286; match_rank=8 a | 0 0 3 7 4 20 19 20 0 20 0 0 0 0 0 c | 0 0 0 5 3 0 1 0 17 0 0 0 0 0 0 g | 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 t | 0 0 13 2 13 0 0 0 3 0 0 0 0 0 0

bin_SANGER_5_FBgn0045759_shift3 (bin_SANGER_5_FBgn0045759) 0.830 0.415 6.342 0.388 0.861 1.385 0.885 9 7 2 10 11 9 9 8.143 9
; oligos_7nt_mkv5_m2 versus bin_SANGER_5_FBgn0045759; m=9/11; ncol2=7; w=6; offset=-1; strand=D; shift=3; score= 8.1429; ---rTAAACA----- ; cor=0.830; Ncor=0.415; logoDP=6.342; NIcor=0.388; NsEucl=0.861; SSD=1.385; NSW=0.885; rcor=9; rNcor=7; rlogoDP=2; rNIcor=10; rNsEucl=11; rSSD=9; rNSW=9; rank_mean=8.143; match_rank=9 a | 0 0 0 9 0 20 20 20 0 19 0 0 0 0 0 c | 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 g | 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 t | 0 0 0 1 20 0 0 0 0 1 0 0 0 0 0

CG16899_SANGER_5_FBgn0037735_shift2 (CG16899_SANGER_5_FBgn0037735) 0.761 0.410 6.041 0.412 0.865 1.788 0.872 11 9 3 7 9 10 10 8.429 10
; oligos_7nt_mkv5_m2 versus CG16899_SANGER_5_FBgn0037735; m=10/11; ncol2=9; w=7; offset=-2; strand=D; shift=2; score= 8.4286; --vrTAAACAA---- ; cor=0.761; Ncor=0.410; logoDP=6.041; NIcor=0.412; NsEucl=0.865; SSD=1.788; NSW=0.872; rcor=11; rNcor=9; rlogoDP=3; rNIcor=7; rNsEucl=9; rSSD=10; rNSW=10; rank_mean=8.429; match_rank=10 a | 0 0 6 10 1 21 20 21 0 21 15 0 0 0 0 c | 0 0 5 2 2 0 0 0 18 0 2 0 0 0 0 g | 0 0 8 8 0 0 0 0 0 0 0 0 0 0 0 t | 0 0 0 0 18 0 1 0 3 0 4 0 0 0 0

slp1_NAR_FBgn0003430_rc_shift0 (slp1_NAR_FBgn0003430_rc) 0.866 0.404 0.606 -0.012 0.902 0.945 0.932 8 11 11 11 7 8 8 9.143 11
; oligos_7nt_mkv5_m2 versus slp1_NAR_FBgn0003430_rc; m=11/11; ncol2=11; w=7; offset=-4; strand=R; shift=0; score= 9.1429; wryrtAAACAm---- ; cor=0.866; Ncor=0.404; logoDP=0.606; NIcor=-0.012; NsEucl=0.902; SSD=0.945; NSW=0.932; rcor=8; rNcor=11; rlogoDP=11; rNIcor=11; rNsEucl=7; rSSD=8; rNSW=8; rank_mean=9.143; match_rank=11 a | 19 21 1 11 10 39 40 41 0 41 16 0 0 0 0 c | 4 3 15 7 4 2 1 0 38 0 14 0 0 0 0 g | 3 13 8 22 0 0 0 0 0 0 3 0 0 0 0 t | 15 4 17 1 27 0 0 0 3 0 8 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m2_shift4 (oligos_7nt_mkv5_m2)																	; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=4; ncol=15; ----waAACAyAAww ; Alignment reference a \| 0 0 0 0 2194 2297 6636 6636 0 6636 0 6636 6636 2283 2203 c \| 0 0 0 0 1355 1342 0 0 5129 0 3468 0 0 1367 1387 g \| 0 0 0 0 1234 1358 0 0 0 0 1211 0 0 1096 1135 t \| 0 0 0 0 1853 1639 0 0 1507 0 1957 0 0 1890 1911
Mirr_Cell_FBgn0014343_shift2 (Mirr_Cell_FBgn0014343)	0.921	0.425	5.397	0.422	0.921	0.444	0.963	1	5	7	5	1	1	1	3.000	1	; oligos_7nt_mkv5_m2 versus Mirr_Cell_FBgn0014343; m=1/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 3; --waawAACA----- ; cor=0.921; Ncor=0.425; logoDP=5.397; NIcor=0.422; NsEucl=0.921; SSD=0.444; NSW=0.963; rcor=1; rNcor=5; rlogoDP=7; rNIcor=5; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=3.000; match_rank=1 a \| 0 0 18 18 22 20 29 41 0 41 0 0 0 0 0 c \| 0 0 6 4 7 1 0 0 41 0 0 0 0 0 0 g \| 0 0 6 10 6 1 2 0 0 0 0 0 0 0 0 t \| 0 0 11 9 6 19 10 0 0 0 0 0 0 0 0
Ara_SOLEXA_FBgn0015904_shift4 (Ara_SOLEXA_FBgn0015904)	0.906	0.494	5.171	0.484	0.916	0.507	0.958	3	1	8	1	4	4	4	3.571	2	; oligos_7nt_mkv5_m2 versus Ara_SOLEXA_FBgn0015904; m=2/11; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 3.5714; ----awwACA----- ; cor=0.906; Ncor=0.494; logoDP=5.171; NIcor=0.484; NsEucl=0.916; SSD=0.507; NSW=0.958; rcor=3; rNcor=1; rlogoDP=8; rNIcor=1; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=3.571; match_rank=2 a \| 0 0 0 0 155 97 193 313 0 313 0 0 0 0 0 c \| 0 0 0 0 36 0 0 0 313 0 0 0 0 0 0 g \| 0 0 0 0 44 45 38 0 0 0 0 0 0 0 0 t \| 0 0 0 0 78 171 82 0 0 0 0 0 0 0 0
Caup_Cell_FBgn0015919_shift2 (Caup_Cell_FBgn0015919)	0.917	0.423	5.406	0.419	0.920	0.465	0.961	2	6	6	6	2	2	2	3.714	3	; oligos_7nt_mkv5_m2 versus Caup_Cell_FBgn0015919; m=3/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 3.7143; --cwwtAACA----- ; cor=0.917; Ncor=0.423; logoDP=5.406; NIcor=0.419; NsEucl=0.920; SSD=0.465; NSW=0.961; rcor=2; rNcor=6; rlogoDP=6; rNIcor=6; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=3.714; match_rank=3 a \| 0 0 4 9 8 4 14 19 0 19 0 0 0 0 0 c \| 0 0 9 0 0 1 0 0 19 0 0 0 0 0 0 g \| 0 0 2 3 4 2 2 0 0 0 0 0 0 0 0 t \| 0 0 4 7 7 12 3 0 0 0 0 0 0 0 0
Mirr_SOLEXA_FBgn0014343_shift4 (Mirr_SOLEXA_FBgn0014343)	0.906	0.494	5.077	0.481	0.917	0.491	0.959	4	2	9	2	3	3	3	3.714	4	; oligos_7nt_mkv5_m2 versus Mirr_SOLEXA_FBgn0014343; m=4/11; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 3.7143; ----wwwACA----- ; cor=0.906; Ncor=0.494; logoDP=5.077; NIcor=0.481; NsEucl=0.917; SSD=0.491; NSW=0.959; rcor=4; rNcor=2; rlogoDP=9; rNIcor=2; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=3.714; match_rank=4 a \| 0 0 0 0 550 410 782 1415 0 1415 0 0 0 0 0 c \| 0 0 0 0 158 93 0 0 1415 0 0 0 0 0 0 g \| 0 0 0 0 327 282 204 0 0 0 0 0 0 0 0 t \| 0 0 0 0 380 630 429 0 0 0 0 0 0 0 0
Ara_Cell_FBgn0015904_shift2 (Ara_Cell_FBgn0015904)	0.896	0.414	5.472	0.409	0.909	0.597	0.950	5	8	5	8	5	5	5	5.857	5	; oligos_7nt_mkv5_m2 versus Ara_Cell_FBgn0015904; m=5/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 5.8571; --raAwwACA----- ; cor=0.896; Ncor=0.414; logoDP=5.472; NIcor=0.409; NsEucl=0.909; SSD=0.597; NSW=0.950; rcor=5; rNcor=8; rlogoDP=5; rNIcor=8; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=5.857; match_rank=5 a \| 0 0 12 16 24 14 23 34 0 34 0 0 0 0 0 c \| 0 0 5 7 1 0 0 0 34 0 0 0 0 0 0 g \| 0 0 10 6 1 5 0 0 0 0 0 0 0 0 0 t \| 0 0 7 5 8 15 11 0 0 0 0 0 0 0 0
Caup_SOLEXA_FBgn0015919_shift4 (Caup_SOLEXA_FBgn0015919)	0.880	0.480	4.998	0.465	0.907	0.623	0.948	7	3	10	3	6	6	6	5.857	6	; oligos_7nt_mkv5_m2 versus Caup_SOLEXA_FBgn0015919; m=6/11; ncol2=6; w=6; offset=0; strand=D; shift=4; score= 5.8571; ----wtwACA----- ; cor=0.880; Ncor=0.480; logoDP=4.998; NIcor=0.465; NsEucl=0.907; SSD=0.623; NSW=0.948; rcor=7; rNcor=3; rlogoDP=10; rNIcor=3; rNsEucl=6; rSSD=6; rNSW=6; rank_mean=5.857; match_rank=6 a \| 0 0 0 0 999 577 1415 2904 2 2904 0 0 0 0 0 c \| 0 0 0 0 460 201 0 0 2902 0 0 0 0 0 0 g \| 0 0 0 0 626 639 511 0 0 0 0 0 0 0 0 t \| 0 0 0 0 819 1487 978 0 0 0 0 0 0 0 0
slp2_SANGER_5_FBgn0004567_shift3 (slp2_SANGER_5_FBgn0004567)	0.773	0.451	6.714	0.451	0.863	1.841	0.869	10	4	1	4	10	11	11	7.286	7	; oligos_7nt_mkv5_m2 versus slp2_SANGER_5_FBgn0004567; m=7/11; ncol2=8; w=7; offset=-1; strand=D; shift=3; score= 7.2857; ---rTAAACAa---- ; cor=0.773; Ncor=0.451; logoDP=6.714; NIcor=0.451; NsEucl=0.863; SSD=1.841; NSW=0.869; rcor=10; rNcor=4; rlogoDP=1; rNIcor=4; rNsEucl=10; rSSD=11; rNSW=11; rank_mean=7.286; match_rank=7 a \| 0 0 0 6 0 18 18 18 0 18 11 0 0 0 0 c \| 0 0 0 0 1 0 0 0 18 0 3 0 0 0 0 g \| 0 0 0 12 0 0 0 0 0 0 3 0 0 0 0 t \| 0 0 0 0 17 0 0 0 0 0 1 0 0 0 0
fd64A_SANGER_5_FBgn0004895_shift2 (fd64A_SANGER_5_FBgn0004895)	0.887	0.409	5.990	0.393	0.896	0.780	0.935	6	10	4	9	8	7	7	7.286	8	; oligos_7nt_mkv5_m2 versus fd64A_SANGER_5_FBgn0004895; m=8/11; ncol2=8; w=6; offset=-2; strand=D; shift=2; score= 7.2857; --tvtAAACA----- ; cor=0.887; Ncor=0.409; logoDP=5.990; NIcor=0.393; NsEucl=0.896; SSD=0.780; NSW=0.935; rcor=6; rNcor=10; rlogoDP=4; rNIcor=9; rNsEucl=8; rSSD=7; rNSW=7; rank_mean=7.286; match_rank=8 a \| 0 0 3 7 4 20 19 20 0 20 0 0 0 0 0 c \| 0 0 0 5 3 0 1 0 17 0 0 0 0 0 0 g \| 0 0 4 6 0 0 0 0 0 0 0 0 0 0 0 t \| 0 0 13 2 13 0 0 0 3 0 0 0 0 0 0
bin_SANGER_5_FBgn0045759_shift3 (bin_SANGER_5_FBgn0045759)	0.830	0.415	6.342	0.388	0.861	1.385	0.885	9	7	2	10	11	9	9	8.143	9	; oligos_7nt_mkv5_m2 versus bin_SANGER_5_FBgn0045759; m=9/11; ncol2=7; w=6; offset=-1; strand=D; shift=3; score= 8.1429; ---rTAAACA----- ; cor=0.830; Ncor=0.415; logoDP=6.342; NIcor=0.388; NsEucl=0.861; SSD=1.385; NSW=0.885; rcor=9; rNcor=7; rlogoDP=2; rNIcor=10; rNsEucl=11; rSSD=9; rNSW=9; rank_mean=8.143; match_rank=9 a \| 0 0 0 9 0 20 20 20 0 19 0 0 0 0 0 c \| 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 g \| 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 t \| 0 0 0 1 20 0 0 0 0 1 0 0 0 0 0
CG16899_SANGER_5_FBgn0037735_shift2 (CG16899_SANGER_5_FBgn0037735)	0.761	0.410	6.041	0.412	0.865	1.788	0.872	11	9	3	7	9	10	10	8.429	10	; oligos_7nt_mkv5_m2 versus CG16899_SANGER_5_FBgn0037735; m=10/11; ncol2=9; w=7; offset=-2; strand=D; shift=2; score= 8.4286; --vrTAAACAA---- ; cor=0.761; Ncor=0.410; logoDP=6.041; NIcor=0.412; NsEucl=0.865; SSD=1.788; NSW=0.872; rcor=11; rNcor=9; rlogoDP=3; rNIcor=7; rNsEucl=9; rSSD=10; rNSW=10; rank_mean=8.429; match_rank=10 a \| 0 0 6 10 1 21 20 21 0 21 15 0 0 0 0 c \| 0 0 5 2 2 0 0 0 18 0 2 0 0 0 0 g \| 0 0 8 8 0 0 0 0 0 0 0 0 0 0 0 t \| 0 0 0 0 18 0 1 0 3 0 4 0 0 0 0
slp1_NAR_FBgn0003430_rc_shift0 (slp1_NAR_FBgn0003430_rc)	0.866	0.404	0.606	-0.012	0.902	0.945	0.932	8	11	11	11	7	8	8	9.143	11	; oligos_7nt_mkv5_m2 versus slp1_NAR_FBgn0003430_rc; m=11/11; ncol2=11; w=7; offset=-4; strand=R; shift=0; score= 9.1429; wryrtAAACAm---- ; cor=0.866; Ncor=0.404; logoDP=0.606; NIcor=-0.012; NsEucl=0.902; SSD=0.945; NSW=0.932; rcor=8; rNcor=11; rlogoDP=11; rNIcor=11; rNsEucl=7; rSSD=8; rNSW=8; rank_mean=9.143; match_rank=11 a \| 19 21 1 11 10 39 40 41 0 41 16 0 0 0 0 c \| 4 3 15 7 4 2 1 0 38 0 14 0 0 0 0 g \| 3 13 8 22 0 0 0 0 0 0 3 0 0 0 0 t \| 15 4 17 1 27 0 0 0 3 0 8 0 0 0 0