One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf -format2 tf -file2 /home/rsat/rsa-tools/public_html/data/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2012_03_11.082424/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_FlyFactorSurvey

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift4 ; 13 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m3_shift4 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=4; ncol=16; ----wsCCACdCmCac ; Alignment reference a | 0 0 0 0 700 493 0 0 2679 0 1110 0 1408 0 1227 463 c | 0 0 0 0 641 905 2679 2679 0 2679 0 2679 1271 2679 662 1262 g | 0 0 0 0 571 804 0 0 0 0 862 0 0 0 311 365 t | 0 0 0 0 767 477 0 0 0 0 707 0 0 0 479 589

CG12029_SOLEXA_5_FBgn0035454_rc_shift2 (CG12029_SOLEXA_5_FBgn0035454_rc) 0.896 0.716 0.880 -0.075 0.939 1.064 0.956 1 7 5 2 1 1 1 2.571 1
; oligos_7nt_mkv5_m3 versus CG12029_SOLEXA_5_FBgn0035454_rc; m=1/12; ncol2=15; w=12; offset=-2; strand=R; shift=2; score= 2.5714; --mvrRCCACACCCay ; cor=0.896; Ncor=0.716; logoDP=0.880; NIcor=-0.075; NsEucl=0.939; SSD=1.064; NSW=0.956; rcor=1; rNcor=7; rlogoDP=5; rNIcor=2; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.571; match_rank=1 a | 0 0 311 274 360 291 135 12 912 9 742 4 33 34 595 198 c | 0 0 334 331 174 0 911 1052 109 1058 0 1062 1031 980 203 377 g | 0 0 170 278 328 767 21 0 44 0 237 0 3 2 19 147 t | 0 0 175 164 214 18 9 12 11 9 97 10 9 60 259 248

CG9895_SOLEXA_5_FBgn0034810_rc_shift4 (CG9895_SOLEXA_5_FBgn0034810_rc) 0.876 0.803 0.412 -0.142 0.930 1.178 0.946 3 1 6 6 3 3 3 3.571 2
; oligos_7nt_mkv5_m3 versus CG9895_SOLEXA_5_FBgn0034810_rc; m=2/12; ncol2=11; w=11; offset=0; strand=R; shift=4; score= 3.5714; ----rrCCACrCCCa- ; cor=0.876; Ncor=0.803; logoDP=0.412; NIcor=-0.142; NsEucl=0.930; SSD=1.178; NSW=0.946; rcor=3; rNcor=1; rlogoDP=6; rNIcor=6; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=3.571; match_rank=2 a | 0 0 0 0 274 376 101 86 760 27 327 31 31 24 494 0 c | 0 0 0 0 126 29 781 818 212 961 0 959 957 921 200 0 g | 0 0 0 0 425 503 45 18 15 0 644 0 0 0 52 0 t | 0 0 0 0 109 73 63 68 3 2 19 0 2 44 239 0

CG9895_SANGER_10_FBgn0034810_rc_shift5 (CG9895_SANGER_10_FBgn0034810_rc) 0.881 0.746 1.008 -0.170 0.931 1.149 0.948 2 4 4 9 2 2 2 3.571 3
; oligos_7nt_mkv5_m3 versus CG9895_SANGER_10_FBgn0034810_rc; m=3/12; ncol2=12; w=11; offset=1; strand=R; shift=5; score= 3.5714; -----rCCACrCCCwh ; cor=0.881; Ncor=0.746; logoDP=1.008; NIcor=-0.170; NsEucl=0.931; SSD=1.149; NSW=0.948; rcor=2; rNcor=4; rlogoDP=4; rNIcor=9; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=3.571; match_rank=3 a | 0 0 0 0 0 11 3 2 20 1 10 1 0 0 14 7 c | 0 0 0 0 0 0 20 21 4 23 0 22 22 22 2 7 g | 0 0 0 0 0 13 1 0 0 0 14 0 2 0 2 3 t | 0 0 0 0 0 0 0 1 0 0 0 1 0 2 6 7

CG3065_F1-5_SOLEXA_2.5_FBgn0034946_rc_shift3 (CG3065_F1-5_SOLEXA_2.5_FBgn0034946_rc) 0.850 0.728 1.503 -0.035 0.927 1.543 0.936 6 5 1 1 4 5 4 3.714 4
; oligos_7nt_mkv5_m3 versus CG3065_F1-5_SOLEXA_2.5_FBgn0034946_rc; m=4/12; ncol2=14; w=12; offset=-1; strand=R; shift=3; score= 3.7143; ---crrCCACGCCCmc ; cor=0.850; Ncor=0.728; logoDP=1.503; NIcor=-0.035; NsEucl=0.927; SSD=1.543; NSW=0.936; rcor=6; rNcor=5; rlogoDP=1; rNIcor=1; rNsEucl=4; rSSD=5; rNSW=4; rank_mean=3.714; match_rank=4 a | 0 0 0 308 363 440 154 25 1086 19 54 53 32 24 593 146 c | 0 0 0 435 296 39 1022 1265 199 1290 9 1263 1276 1125 610 856 g | 0 0 0 291 384 766 62 0 27 0 1205 0 0 1 20 78 t | 0 0 0 218 276 74 81 29 7 10 51 3 11 169 96 219

luna_SOLEXA_5_FBgn0040765_rc_shift4 (luna_SOLEXA_5_FBgn0040765_rc) 0.837 0.717 1.085 -0.079 0.926 1.563 0.935 8 6 3 3 5 6 5 5.143 5
; oligos_7nt_mkv5_m3 versus luna_SOLEXA_5_FBgn0040765_rc; m=5/12; ncol2=14; w=12; offset=0; strand=R; shift=4; score= 5.1429; ----grCCACGCCCwt ; cor=0.837; Ncor=0.717; logoDP=1.085; NIcor=-0.079; NsEucl=0.926; SSD=1.563; NSW=0.935; rcor=8; rNcor=6; rlogoDP=3; rNIcor=3; rNsEucl=5; rSSD=6; rNSW=5; rank_mean=5.143; match_rank=5 a | 0 0 0 0 132 155 85 73 434 5 126 18 29 18 276 111 c | 0 0 0 0 68 26 463 462 149 607 1 588 579 558 120 121 g | 0 0 0 0 283 396 27 18 24 0 468 5 0 0 36 111 t | 0 0 0 0 84 35 37 59 5 0 17 1 4 36 180 269

CG12029_SANGER_10_FBgn0035454_rc_shift5 (CG12029_SANGER_10_FBgn0035454_rc) 0.865 0.793 0.144 -0.192 0.922 1.465 0.933 4 2 9 10 7 4 6 6.000 6
; oligos_7nt_mkv5_m3 versus CG12029_SANGER_10_FBgn0035454_rc; m=6/12; ncol2=11; w=11; offset=1; strand=R; shift=5; score= 6; -----RCCACACCCac ; cor=0.865; Ncor=0.793; logoDP=0.144; NIcor=-0.192; NsEucl=0.922; SSD=1.465; NSW=0.933; rcor=4; rNcor=2; rlogoDP=9; rNIcor=10; rNsEucl=7; rSSD=4; rNSW=6; rank_mean=6.000; match_rank=6 a | 0 0 0 0 0 5 4 0 16 0 17 0 0 0 13 4 c | 0 0 0 0 0 0 14 20 2 20 0 20 20 20 3 11 g | 0 0 0 0 0 15 2 0 2 0 2 0 0 0 0 1 t | 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 4

CG3065_F1-3_SOLEXA_2.5_FBgn0034946_rc_shift3 (CG3065_F1-3_SOLEXA_2.5_FBgn0034946_rc) 0.844 0.675 0.051 -0.153 0.924 1.680 0.930 7 8 12 7 6 7 7 7.714 7
; oligos_7nt_mkv5_m3 versus CG3065_F1-3_SOLEXA_2.5_FBgn0034946_rc; m=7/12; ncol2=15; w=12; offset=-1; strand=R; shift=3; score= 7.7143; ---carCCACGCCCmC ; cor=0.844; Ncor=0.675; logoDP=0.051; NIcor=-0.153; NsEucl=0.924; SSD=1.680; NSW=0.930; rcor=7; rNcor=8; rlogoDP=12; rNIcor=7; rNsEucl=6; rSSD=7; rNSW=7; rank_mean=7.714; match_rank=7 a | 0 0 0 47 105 85 40 1 234 11 4 9 10 13 171 38 c | 0 0 0 110 52 7 211 260 29 249 0 253 253 217 77 181 g | 0 0 0 53 59 166 8 0 0 0 255 0 0 0 1 10 t | 0 0 0 47 44 5 4 2 0 3 4 1 0 33 14 34

CG3065_F1-3_SANGER_2.5_FBgn0034946_rc_shift5 (CG3065_F1-3_SANGER_2.5_FBgn0034946_rc) 0.855 0.784 0.079 -0.218 0.916 1.714 0.922 5 3 11 11 8 8 8 7.714 8
; oligos_7nt_mkv5_m3 versus CG3065_F1-3_SANGER_2.5_FBgn0034946_rc; m=8/12; ncol2=11; w=11; offset=1; strand=R; shift=5; score= 7.7143; -----rCCACGCCCmC ; cor=0.855; Ncor=0.784; logoDP=0.079; NIcor=-0.218; NsEucl=0.916; SSD=1.714; NSW=0.922; rcor=5; rNcor=3; rlogoDP=11; rNIcor=11; rNsEucl=8; rSSD=8; rNSW=8; rank_mean=7.714; match_rank=8 a | 0 0 0 0 0 7 2 0 20 0 0 0 0 0 12 0 c | 0 0 0 0 0 0 18 21 1 21 0 21 21 20 6 15 g | 0 0 0 0 0 13 1 0 0 0 21 0 0 0 1 1 t | 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 5

CG5669_SANGER_10_FBgn0039169_rc_shift2 (CG5669_SANGER_10_FBgn0039169_rc) 0.768 0.614 1.132 -0.092 0.908 2.428 0.899 12 10 2 4 10 12 11 8.714 9
; oligos_7nt_mkv5_m3 versus CG5669_SANGER_10_FBgn0039169_rc; m=9/12; ncol2=15; w=12; offset=-2; strand=R; shift=2; score= 8.7143; --kwgRCCmCGCCCmy ; cor=0.768; Ncor=0.614; logoDP=1.132; NIcor=-0.092; NsEucl=0.908; SSD=2.428; NSW=0.899; rcor=12; rNcor=10; rlogoDP=2; rNIcor=4; rNsEucl=10; rSSD=12; rNSW=11; rank_mean=8.714; match_rank=9 a | 0 0 1 6 5 6 0 0 10 0 1 0 0 0 8 1 c | 0 0 1 3 2 0 21 20 14 24 1 24 24 23 14 11 g | 0 0 7 2 13 18 0 1 0 0 20 0 0 0 1 4 t | 0 0 15 13 4 0 3 3 0 0 2 0 0 1 1 7

sr_SOLEXA_5_FBgn0003499_rc_shift0 (sr_SOLEXA_5_FBgn0003499_rc) 0.782 0.489 0.322 -0.101 0.902 1.906 0.905 11 12 7 5 11 9 10 9.286 10
; oligos_7nt_mkv5_m3 versus sr_SOLEXA_5_FBgn0003499_rc; m=10/12; ncol2=14; w=10; offset=-4; strand=R; shift=0; score= 9.2857; mcmCrCCCmCrcmm-- ; cor=0.782; Ncor=0.489; logoDP=0.322; NIcor=-0.101; NsEucl=0.902; SSD=1.906; NSW=0.905; rcor=11; rNcor=12; rlogoDP=7; rNIcor=5; rNsEucl=11; rSSD=9; rNSW=10; rank_mean=9.286; match_rank=10 a | 605 561 853 199 766 38 0 39 1576 8 722 366 933 560 0 0 c | 716 874 1114 1915 91 2300 2338 1947 697 2330 320 1380 588 851 0 0 g | 461 351 163 90 1194 0 0 0 6 0 1078 230 483 340 0 0 t | 424 552 208 134 287 0 0 352 59 0 218 362 309 436 0 0

klu_SOLEXA_5_FBgn0013469_rc_shift2 (klu_SOLEXA_5_FBgn0013469_rc) 0.793 0.634 0.139 -0.165 0.916 2.046 0.915 10 9 10 8 9 10 9 9.286 11
; oligos_7nt_mkv5_m3 versus klu_SOLEXA_5_FBgn0013469_rc; m=11/12; ncol2=15; w=12; offset=-2; strand=R; shift=2; score= 9.2857; --mmmmmCACCCmCrC ; cor=0.793; Ncor=0.634; logoDP=0.139; NIcor=-0.165; NsEucl=0.916; SSD=2.046; NSW=0.915; rcor=10; rNcor=9; rlogoDP=10; rNIcor=8; rNsEucl=9; rSSD=10; rNSW=9; rank_mean=9.286; match_rank=11 a | 0 0 132 156 135 134 155 9 378 3 3 5 315 2 226 54 c | 0 0 152 168 188 204 298 491 6 491 485 472 168 493 10 360 g | 0 0 82 90 85 64 24 0 48 0 5 0 6 1 230 5 t | 0 0 91 79 95 101 26 3 71 9 10 26 14 7 37 33

klu_SANGER_10_FBgn0013469_rc_shift6 (klu_SANGER_10_FBgn0013469_rc) 0.793 0.610 0.211 -0.227 0.896 2.151 0.892 9 11 8 12 12 11 12 10.714 12
; oligos_7nt_mkv5_m3 versus klu_SANGER_10_FBgn0013469_rc; m=12/12; ncol2=11; w=10; offset=2; strand=R; shift=6; score=10.7143; ------mCACCCmCrC ; cor=0.793; Ncor=0.610; logoDP=0.211; NIcor=-0.227; NsEucl=0.896; SSD=2.151; NSW=0.892; rcor=9; rNcor=11; rlogoDP=8; rNIcor=12; rNsEucl=12; rSSD=11; rNSW=12; rank_mean=10.714; match_rank=12 a | 0 0 0 0 0 0 7 0 18 0 0 0 13 0 9 0 c | 0 0 0 0 0 0 11 20 0 20 20 19 7 20 0 16 g | 0 0 0 0 0 0 2 0 0 0 0 0 0 0 10 0 t | 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 3

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m3_shift4 (oligos_7nt_mkv5_m3)																	; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=4; ncol=16; ----wsCCACdCmCac ; Alignment reference a \| 0 0 0 0 700 493 0 0 2679 0 1110 0 1408 0 1227 463 c \| 0 0 0 0 641 905 2679 2679 0 2679 0 2679 1271 2679 662 1262 g \| 0 0 0 0 571 804 0 0 0 0 862 0 0 0 311 365 t \| 0 0 0 0 767 477 0 0 0 0 707 0 0 0 479 589
CG12029_SOLEXA_5_FBgn0035454_rc_shift2 (CG12029_SOLEXA_5_FBgn0035454_rc)	0.896	0.716	0.880	-0.075	0.939	1.064	0.956	1	7	5	2	1	1	1	2.571	1	; oligos_7nt_mkv5_m3 versus CG12029_SOLEXA_5_FBgn0035454_rc; m=1/12; ncol2=15; w=12; offset=-2; strand=R; shift=2; score= 2.5714; --mvrRCCACACCCay ; cor=0.896; Ncor=0.716; logoDP=0.880; NIcor=-0.075; NsEucl=0.939; SSD=1.064; NSW=0.956; rcor=1; rNcor=7; rlogoDP=5; rNIcor=2; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.571; match_rank=1 a \| 0 0 311 274 360 291 135 12 912 9 742 4 33 34 595 198 c \| 0 0 334 331 174 0 911 1052 109 1058 0 1062 1031 980 203 377 g \| 0 0 170 278 328 767 21 0 44 0 237 0 3 2 19 147 t \| 0 0 175 164 214 18 9 12 11 9 97 10 9 60 259 248
CG9895_SOLEXA_5_FBgn0034810_rc_shift4 (CG9895_SOLEXA_5_FBgn0034810_rc)	0.876	0.803	0.412	-0.142	0.930	1.178	0.946	3	1	6	6	3	3	3	3.571	2	; oligos_7nt_mkv5_m3 versus CG9895_SOLEXA_5_FBgn0034810_rc; m=2/12; ncol2=11; w=11; offset=0; strand=R; shift=4; score= 3.5714; ----rrCCACrCCCa- ; cor=0.876; Ncor=0.803; logoDP=0.412; NIcor=-0.142; NsEucl=0.930; SSD=1.178; NSW=0.946; rcor=3; rNcor=1; rlogoDP=6; rNIcor=6; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=3.571; match_rank=2 a \| 0 0 0 0 274 376 101 86 760 27 327 31 31 24 494 0 c \| 0 0 0 0 126 29 781 818 212 961 0 959 957 921 200 0 g \| 0 0 0 0 425 503 45 18 15 0 644 0 0 0 52 0 t \| 0 0 0 0 109 73 63 68 3 2 19 0 2 44 239 0
CG9895_SANGER_10_FBgn0034810_rc_shift5 (CG9895_SANGER_10_FBgn0034810_rc)	0.881	0.746	1.008	-0.170	0.931	1.149	0.948	2	4	4	9	2	2	2	3.571	3	; oligos_7nt_mkv5_m3 versus CG9895_SANGER_10_FBgn0034810_rc; m=3/12; ncol2=12; w=11; offset=1; strand=R; shift=5; score= 3.5714; -----rCCACrCCCwh ; cor=0.881; Ncor=0.746; logoDP=1.008; NIcor=-0.170; NsEucl=0.931; SSD=1.149; NSW=0.948; rcor=2; rNcor=4; rlogoDP=4; rNIcor=9; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=3.571; match_rank=3 a \| 0 0 0 0 0 11 3 2 20 1 10 1 0 0 14 7 c \| 0 0 0 0 0 0 20 21 4 23 0 22 22 22 2 7 g \| 0 0 0 0 0 13 1 0 0 0 14 0 2 0 2 3 t \| 0 0 0 0 0 0 0 1 0 0 0 1 0 2 6 7
CG3065_F1-5_SOLEXA_2.5_FBgn0034946_rc_shift3 (CG3065_F1-5_SOLEXA_2.5_FBgn0034946_rc)	0.850	0.728	1.503	-0.035	0.927	1.543	0.936	6	5	1	1	4	5	4	3.714	4	; oligos_7nt_mkv5_m3 versus CG3065_F1-5_SOLEXA_2.5_FBgn0034946_rc; m=4/12; ncol2=14; w=12; offset=-1; strand=R; shift=3; score= 3.7143; ---crrCCACGCCCmc ; cor=0.850; Ncor=0.728; logoDP=1.503; NIcor=-0.035; NsEucl=0.927; SSD=1.543; NSW=0.936; rcor=6; rNcor=5; rlogoDP=1; rNIcor=1; rNsEucl=4; rSSD=5; rNSW=4; rank_mean=3.714; match_rank=4 a \| 0 0 0 308 363 440 154 25 1086 19 54 53 32 24 593 146 c \| 0 0 0 435 296 39 1022 1265 199 1290 9 1263 1276 1125 610 856 g \| 0 0 0 291 384 766 62 0 27 0 1205 0 0 1 20 78 t \| 0 0 0 218 276 74 81 29 7 10 51 3 11 169 96 219
luna_SOLEXA_5_FBgn0040765_rc_shift4 (luna_SOLEXA_5_FBgn0040765_rc)	0.837	0.717	1.085	-0.079	0.926	1.563	0.935	8	6	3	3	5	6	5	5.143	5	; oligos_7nt_mkv5_m3 versus luna_SOLEXA_5_FBgn0040765_rc; m=5/12; ncol2=14; w=12; offset=0; strand=R; shift=4; score= 5.1429; ----grCCACGCCCwt ; cor=0.837; Ncor=0.717; logoDP=1.085; NIcor=-0.079; NsEucl=0.926; SSD=1.563; NSW=0.935; rcor=8; rNcor=6; rlogoDP=3; rNIcor=3; rNsEucl=5; rSSD=6; rNSW=5; rank_mean=5.143; match_rank=5 a \| 0 0 0 0 132 155 85 73 434 5 126 18 29 18 276 111 c \| 0 0 0 0 68 26 463 462 149 607 1 588 579 558 120 121 g \| 0 0 0 0 283 396 27 18 24 0 468 5 0 0 36 111 t \| 0 0 0 0 84 35 37 59 5 0 17 1 4 36 180 269
CG12029_SANGER_10_FBgn0035454_rc_shift5 (CG12029_SANGER_10_FBgn0035454_rc)	0.865	0.793	0.144	-0.192	0.922	1.465	0.933	4	2	9	10	7	4	6	6.000	6	; oligos_7nt_mkv5_m3 versus CG12029_SANGER_10_FBgn0035454_rc; m=6/12; ncol2=11; w=11; offset=1; strand=R; shift=5; score= 6; -----RCCACACCCac ; cor=0.865; Ncor=0.793; logoDP=0.144; NIcor=-0.192; NsEucl=0.922; SSD=1.465; NSW=0.933; rcor=4; rNcor=2; rlogoDP=9; rNIcor=10; rNsEucl=7; rSSD=4; rNSW=6; rank_mean=6.000; match_rank=6 a \| 0 0 0 0 0 5 4 0 16 0 17 0 0 0 13 4 c \| 0 0 0 0 0 0 14 20 2 20 0 20 20 20 3 11 g \| 0 0 0 0 0 15 2 0 2 0 2 0 0 0 0 1 t \| 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 4
CG3065_F1-3_SOLEXA_2.5_FBgn0034946_rc_shift3 (CG3065_F1-3_SOLEXA_2.5_FBgn0034946_rc)	0.844	0.675	0.051	-0.153	0.924	1.680	0.930	7	8	12	7	6	7	7	7.714	7	; oligos_7nt_mkv5_m3 versus CG3065_F1-3_SOLEXA_2.5_FBgn0034946_rc; m=7/12; ncol2=15; w=12; offset=-1; strand=R; shift=3; score= 7.7143; ---carCCACGCCCmC ; cor=0.844; Ncor=0.675; logoDP=0.051; NIcor=-0.153; NsEucl=0.924; SSD=1.680; NSW=0.930; rcor=7; rNcor=8; rlogoDP=12; rNIcor=7; rNsEucl=6; rSSD=7; rNSW=7; rank_mean=7.714; match_rank=7 a \| 0 0 0 47 105 85 40 1 234 11 4 9 10 13 171 38 c \| 0 0 0 110 52 7 211 260 29 249 0 253 253 217 77 181 g \| 0 0 0 53 59 166 8 0 0 0 255 0 0 0 1 10 t \| 0 0 0 47 44 5 4 2 0 3 4 1 0 33 14 34
CG3065_F1-3_SANGER_2.5_FBgn0034946_rc_shift5 (CG3065_F1-3_SANGER_2.5_FBgn0034946_rc)	0.855	0.784	0.079	-0.218	0.916	1.714	0.922	5	3	11	11	8	8	8	7.714	8	; oligos_7nt_mkv5_m3 versus CG3065_F1-3_SANGER_2.5_FBgn0034946_rc; m=8/12; ncol2=11; w=11; offset=1; strand=R; shift=5; score= 7.7143; -----rCCACGCCCmC ; cor=0.855; Ncor=0.784; logoDP=0.079; NIcor=-0.218; NsEucl=0.916; SSD=1.714; NSW=0.922; rcor=5; rNcor=3; rlogoDP=11; rNIcor=11; rNsEucl=8; rSSD=8; rNSW=8; rank_mean=7.714; match_rank=8 a \| 0 0 0 0 0 7 2 0 20 0 0 0 0 0 12 0 c \| 0 0 0 0 0 0 18 21 1 21 0 21 21 20 6 15 g \| 0 0 0 0 0 13 1 0 0 0 21 0 0 0 1 1 t \| 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 5
CG5669_SANGER_10_FBgn0039169_rc_shift2 (CG5669_SANGER_10_FBgn0039169_rc)	0.768	0.614	1.132	-0.092	0.908	2.428	0.899	12	10	2	4	10	12	11	8.714	9	; oligos_7nt_mkv5_m3 versus CG5669_SANGER_10_FBgn0039169_rc; m=9/12; ncol2=15; w=12; offset=-2; strand=R; shift=2; score= 8.7143; --kwgRCCmCGCCCmy ; cor=0.768; Ncor=0.614; logoDP=1.132; NIcor=-0.092; NsEucl=0.908; SSD=2.428; NSW=0.899; rcor=12; rNcor=10; rlogoDP=2; rNIcor=4; rNsEucl=10; rSSD=12; rNSW=11; rank_mean=8.714; match_rank=9 a \| 0 0 1 6 5 6 0 0 10 0 1 0 0 0 8 1 c \| 0 0 1 3 2 0 21 20 14 24 1 24 24 23 14 11 g \| 0 0 7 2 13 18 0 1 0 0 20 0 0 0 1 4 t \| 0 0 15 13 4 0 3 3 0 0 2 0 0 1 1 7
sr_SOLEXA_5_FBgn0003499_rc_shift0 (sr_SOLEXA_5_FBgn0003499_rc)	0.782	0.489	0.322	-0.101	0.902	1.906	0.905	11	12	7	5	11	9	10	9.286	10	; oligos_7nt_mkv5_m3 versus sr_SOLEXA_5_FBgn0003499_rc; m=10/12; ncol2=14; w=10; offset=-4; strand=R; shift=0; score= 9.2857; mcmCrCCCmCrcmm-- ; cor=0.782; Ncor=0.489; logoDP=0.322; NIcor=-0.101; NsEucl=0.902; SSD=1.906; NSW=0.905; rcor=11; rNcor=12; rlogoDP=7; rNIcor=5; rNsEucl=11; rSSD=9; rNSW=10; rank_mean=9.286; match_rank=10 a \| 605 561 853 199 766 38 0 39 1576 8 722 366 933 560 0 0 c \| 716 874 1114 1915 91 2300 2338 1947 697 2330 320 1380 588 851 0 0 g \| 461 351 163 90 1194 0 0 0 6 0 1078 230 483 340 0 0 t \| 424 552 208 134 287 0 0 352 59 0 218 362 309 436 0 0
klu_SOLEXA_5_FBgn0013469_rc_shift2 (klu_SOLEXA_5_FBgn0013469_rc)	0.793	0.634	0.139	-0.165	0.916	2.046	0.915	10	9	10	8	9	10	9	9.286	11	; oligos_7nt_mkv5_m3 versus klu_SOLEXA_5_FBgn0013469_rc; m=11/12; ncol2=15; w=12; offset=-2; strand=R; shift=2; score= 9.2857; --mmmmmCACCCmCrC ; cor=0.793; Ncor=0.634; logoDP=0.139; NIcor=-0.165; NsEucl=0.916; SSD=2.046; NSW=0.915; rcor=10; rNcor=9; rlogoDP=10; rNIcor=8; rNsEucl=9; rSSD=10; rNSW=9; rank_mean=9.286; match_rank=11 a \| 0 0 132 156 135 134 155 9 378 3 3 5 315 2 226 54 c \| 0 0 152 168 188 204 298 491 6 491 485 472 168 493 10 360 g \| 0 0 82 90 85 64 24 0 48 0 5 0 6 1 230 5 t \| 0 0 91 79 95 101 26 3 71 9 10 26 14 7 37 33
klu_SANGER_10_FBgn0013469_rc_shift6 (klu_SANGER_10_FBgn0013469_rc)	0.793	0.610	0.211	-0.227	0.896	2.151	0.892	9	11	8	12	12	11	12	10.714	12	; oligos_7nt_mkv5_m3 versus klu_SANGER_10_FBgn0013469_rc; m=12/12; ncol2=11; w=10; offset=2; strand=R; shift=6; score=10.7143; ------mCACCCmCrC ; cor=0.793; Ncor=0.610; logoDP=0.211; NIcor=-0.227; NsEucl=0.896; SSD=2.151; NSW=0.892; rcor=9; rNcor=11; rlogoDP=8; rNIcor=12; rNsEucl=12; rSSD=11; rNSW=12; rank_mean=10.714; match_rank=12 a \| 0 0 0 0 0 0 7 0 18 0 0 0 13 0 9 0 c \| 0 0 0 0 0 0 11 20 0 20 20 19 7 20 0 16 g \| 0 0 0 0 0 0 2 0 0 0 0 0 0 0 10 0 t \| 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 3