RSA-tools - peak-motifs result

Analysis: _Kr_D.mel_1-3h_Markov_m=k-2_ (11/03/2012 08:46)

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 asmb: cttatca (sig=107.66) RC: tgataag oligos_6nt_mkv4_m2 asmb: agatac (sig=104.17) RC: gtatct oligos_6nt_mkv4_m3 asmb: tacata (sig=96.26) RC: tatgta	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 asmb: gaaagggttaa (sig=300) RC: ttaaccctttc positions_6nt_m2 asmb: aataatttatattaaaatat (sig=43.16) RC: atattttaatataaattatt positions_6nt_m3 asmb: caggta (sig=28.63) RC: tacctg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 asmb: tattttta (sig=70.69) RC: taaaaata oligos_7nt_mkv5_m2 asmb: aacacaa (sig=47.88) RC: ttgtgtt oligos_7nt_mkv5_m3 asmb: ccacgccc (sig=44.86) RC: gggcgtgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	positions_7nt_m1 asmb: aaaagggttaa (sig=300) RC: ttaaccctttt positions_7nt_m2 asmb: aatttaaaatatttta (sig=18.87) RC: taaaatattttaaatt positions_7nt_m3 asmb: tctctctc (sig=15.98) RC: gagagaga	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	ykCTTATSAry RYTSATAAGMR	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykCTTATSAry Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykCTTATSAry Optix MA0199.1 R 5 0.4545 0.957 0.435 ....TATsA.. TATCA so MA0246.1 R 6 0.5455 0.768 0.419 ...TTATsA.. GTATCA Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykCTTATSAry So_Cell_FBgn0003460 So_Cell_FBgn0003460 R 7 0.6364 0.939 0.598 ....TATsArw TATCAYT So_SOLEXA_FBgn0003460 So_SOLEXA_FBgn0003460 R 7 0.5833 0.959 0.559 ....TATsArw TATCAYW. Optix_SOLEXA_FBgn0025360 Optix_SOLEXA_FBgn0025360 R 7 0.5833 0.951 0.555 ....TATsArw TATCACW. Total maches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykCTTATSAry Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ykCTTATSAry Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1472 (24.52%) Max nb of predicted sites per peak: 4  (dm3_chr3R_295498_299044_+) Mean nb of predicted sites per peak: 1.24	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	acAGATACas STGTATCTGT	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acAGATACas Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acAGATACas so MA0246.1 D 6 0.6000 0.762 0.457 ..AGATAC.. TGATAC Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acAGATACas Total maches= 0		No match
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acAGATACas Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acAGATACas Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2542 (42.35%) Max nb of predicted sites per peak: 18  (dm3_chr3L_8821827_8824117_+) Mean nb of predicted sites per peak: 1.86	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	yrTACATAyr YRTATGTAYR	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrTACATAyr Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrTACATAyr Cf2_II MA0015.1 R 9 0.8182 0.825 0.675 .aTACATAta RYAYATATA. ara MA0210.1 D 5 0.5000 0.828 0.414 .aTACA.... wwACA Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrTACATAyr Caup_SOLEXA_FBgn0015919 Caup_SOLEXA_FBgn0015919 D 6 0.6000 0.839 0.503 yaTACA.... wtwACA Mirr_SOLEXA_FBgn0014343 Mirr_SOLEXA_FBgn0014343 D 6 0.6000 0.828 0.497 yaTACA.... wwwACA Ara_SOLEXA_FBgn0015904 Ara_SOLEXA_FBgn0015904 D 6 0.6000 0.790 0.474 yaTACA.... awwACA Total maches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrTACATAyr Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrTACATAyr Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3335 (55.56%) Max nb of predicted sites per peak: 15  (dm3_chrX_6751439_6752394_+) Mean nb of predicted sites per peak: 2.06	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   positions_6nt_m1	rsrAAAGGGTTAars SYTTAACCCTTTYSY	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAars Kr_JASPAR MA0452.1 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr Kr_FlyReg_FBgn0001325 D 10 0.6667 0.958 0.639 ...AAAGGGTTAA.. AAmGGGTtaw Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAars Kr MA0452.1 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAars Kr_NAR_FBgn0001325 Kr_NAR_FBgn0001325 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr_FlyReg_FBgn0001325 Kr_FlyReg_FBgn0001325 D 10 0.6667 0.958 0.639 ...AAAGGGTTAA.. AAmGGGTtaw Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAars Kr Kr D 10 0.6667 0.967 0.645 ..rAAAGGGTTA... aAAaGGGTta Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAars Kr Kr R 11 0.7333 0.969 0.711 .rrAAAGGGTTA... YRAAAGGGTTA Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1621 (27.00%) Max nb of predicted sites per peak: 6  (dm3_chrX_3912477_3915237_+) Mean nb of predicted sites per peak: 1.23	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   positions_6nt_m2	wwAwwwwwTTwwwwwwwwwTAwww WWWTAWWWWWWWWWAAWWWWWTWW	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwww Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwww Total maches= 0		No match
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwww Total maches= 0		No match
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwww Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwww Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2976 (49.58%) Max nb of predicted sites per peak: 25  (dm3_chr2R_14561778_14563390_+) Mean nb of predicted sites per peak: 3.06	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   positions_6nt_m3	rgCAGGTAra TYTACCTGCY	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra sna MA0086.1 D 6 0.6000 0.777 0.466 ..CAGGTA.. CAGGTG Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra vfl_SANGER_5_FBgn0259789 vfl_SANGER_5_FBgn0259789 D 8 0.8000 0.955 0.764 .rCAGGTAr. gCAGGTAG vfl_SOLEXA_5_FBgn0259789 vfl_SOLEXA_5_FBgn0259789 D 10 0.6667 0.948 0.632 wrCAGGTAra ...bkCAGGTAGs.. wor_SOLEXA_2.5_FBgn0001983 wor_SOLEXA_2.5_FBgn0001983 R 8 0.8000 0.781 0.624 .rCAGGTAr. RCAGGTGK Total maches= 10 (7 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra sna sna D 9 0.9000 0.788 0.709 wrCAGGTAr. AdCArGTdr Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra sna sna R 9 0.9000 0.796 0.717 wrCAGGTAr. ARCAGGTKS Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2369 (39.46%) Max nb of predicted sites per peak: 6  (dm3_chrX_6890665_6894015_+) Mean nb of predicted sites per peak: 1.49	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv5_m1	wdTATyTkkAth DATMMARATAHW	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wdTATyTkkAth Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wdTATyTkkAth br_Z2 MA0011.1 D 7 0.5385 0.822 0.443 wwTATYT..... .wCTAtTt Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wdTATyTkkAth CG12361_Cell_FBgn0250756 CG12361_Cell_FBgn0250756 D 7 0.5385 0.784 0.422 .....YTkKAww tTTwATk. br-Z1_FlyReg_FBgn0000210 br-Z1_FlyReg_FBgn0000210 R 7 0.5385 0.832 0.448 wwTATYT..... .TCTAWTT hb_FlyReg_FBgn0001180 hb_FlyReg_FBgn0001180 D 8 0.6667 0.759 0.506 ...ATYTkKAw. tTTTTTrt Total maches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wdTATyTkkAth Antp Antp R 6 0.5000 0.858 0.429 wwTATY...... WTTATK br-Z1 br-Z1 R 8 0.6667 0.802 0.535 ....TYTkKAww TTWGTATY Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wdTATyTkkAth Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2952 (49.18%) Max nb of predicted sites per peak: 8  (dm3_chr3L_10843993_10846586_+) Mean nb of predicted sites per peak: 1.51	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv5_m2	aaAACAyAAww WWTTRTGTTTT	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAww Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAww mirr MA0233.1 D 5 0.4545 0.930 0.423 .aAACA..... wAACA ara MA0210.1 D 5 0.4545 0.926 0.421 .aAACA..... wwACA caup MA0217.1 D 5 0.4545 0.926 0.421 .aAACA..... tAACA Total maches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAww Mirr_Cell_FBgn0014343 Mirr_Cell_FBgn0014343 D 6 0.4615 0.921 0.425 waAACA..... ..awAACA Ara_SOLEXA_FBgn0015904 Ara_SOLEXA_FBgn0015904 D 6 0.5455 0.906 0.494 waAACA..... awwACA Caup_Cell_FBgn0015919 Caup_Cell_FBgn0015919 D 6 0.4615 0.917 0.423 waAACA..... ..wtAACA Total maches= 11 (8 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAww Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAww Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2852 (47.51%) Max nb of predicted sites per peak: 6  (dm3_chr3L_12719071_12720889_+) Mean nb of predicted sites per peak: 1.44	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv5_m3	ysCCACrCmCmc GKGKGYGTGGSR	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc CG12029_SOLEXA_5_FBgn0035454 CG12029_SOLEXA_5_FBgn0035454 R 12 0.8000 0.896 0.716 wsCCACdCmCac ..RRCCACACCCAY. CG9895_SOLEXA_5_FBgn0034810 CG9895_SOLEXA_5_FBgn0034810 R 11 0.9167 0.876 0.803 wsCCACdCmCa. RRCCACRCCCA CG9895_SANGER_10_FBgn0034810 CG9895_SANGER_10_FBgn0034810 R 11 0.8462 0.881 0.746 .sCCACdCmCac RCCACRCCCWH. Total maches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2020 (33.65%) Max nb of predicted sites per peak: 5  (dm3_chrX_9025456_9029979_+) Mean nb of predicted sites per peak: 1.33	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   positions_7nt_m1	rvvAAAGGGTTAArs SYTTAACCCTTTBBY	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr_JASPAR MA0452.1 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr Kr_FlyReg_FBgn0001325 D 10 0.6667 0.950 0.634 ...AAAGGGTTAA.. AAmGGGTtaw Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr MA0452.1 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr_NAR_FBgn0001325 Kr_NAR_FBgn0001325 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr_FlyReg_FBgn0001325 Kr_FlyReg_FBgn0001325 D 10 0.6667 0.950 0.634 ...AAAGGGTTAA.. AAmGGGTtaw Ptx1_SOLEXA_FBgn0020912 Ptx1_SOLEXA_FBgn0020912 R 8 0.5333 0.751 0.400 ......GGGTTAAr. GGATTARC Total maches= 3		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr Kr D 10 0.6667 0.966 0.644 ..rAAAGGGTTA... aAAaGGGTta Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr Kr R 11 0.7333 0.966 0.708 .rrAAAGGGTTA... YRAAAGGGTTA Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1512 (25.19%) Max nb of predicted sites per peak: 5  (dm3_chrX_20522699_20524464_+) Mean nb of predicted sites per peak: 1.22	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   positions_7nt_m2	wwaATwwwwwwwwTwTwaww WWTWAWAWWWWWWWWATTWW	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww bab1 bab1 R 14 0.7000 0.765 0.535 wwAATwwwwwwwwT...... AYWATWATAWATAT Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2677 (44.59%) Max nb of predicted sites per peak: 13  (dm3_chr2L_13233677_13235771_+) Mean nb of predicted sites per peak: 2.36	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   positions_7nt_m3	yckCTCkCkCtc GAGMGMGAGMGR	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Trl MA0205.1 D 10 0.8333 0.893 0.744 yckCTCkCKC.. yykCTCTCty Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Trl_FlyReg_FBgn0013263 Trl_FlyReg_FBgn0013263 D 10 0.8333 0.893 0.744 yckCTCkCKC.. yykCTCTCty Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Trl Trl D 12 0.9231 0.821 0.757 yckCTCkCKCtc TtkykCTCtCtc. Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1902 (31.68%) Max nb of predicted sites per peak: 19  (dm3_chr2R_13603197_13605856_+) Mean nb of predicted sites per peak: 2.57	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Prediced sites on test peaks (all motifs)

[tab] [bed]

Command:  peak-motifs  -v 1 -title _Kr_D.mel_1-3h_Markov_m=k-2_ -i $RSAT/public_html/tmp/peak-motifs.2012_03_11.082424/peak-motifspeak_seq.masked -max_seq_len 2000 -min_markov -2 -max_markov -2 -disco oligos,positions -nmotifs 3 -minol 6 -maxol 7 -2str -motif_db jaspar_core_insects tf $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_insects_2009_10.tf -motif_db FlyFactorSurvey tf $RSAT/public_html/data/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey.tf -motif_db DMMPMM_drosophila tf $RSAT/public_html/data/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -motif_db IDMMPMM_drosophila tf $RSAT/public_html/data/motif_databases/DMMPMM_drosophila/idmmpmm_PCM.tf -ref_motifs $RSAT/public_html/tmp/peak-motifs.2012_03_11.082424/peak-motifs_ref_motifs.tf -source galaxy -task purge,seqlen,composition,disco,merge_words,collect_motifs,motifs_vs_motifs,timelog,archive,synthesis,motifs_vs_db,ref_motifs,motifs_vs_ref,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/peak-motifs.2012_03_11.082424