RSA-tools - peak-motifs result

Analysis: Kr_D.mel_1-3h_Markov_m=k-2 (08/12/2011 12:08)

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 asmb: attaaa (sig=153.96) RC: tttaat oligos_6nt_mkv4_m2 asmb: atgcaa (sig=110.32) RC: ttgcat oligos_6nt_mkv4_m3 asmb: aaattc (sig=99.40) RC: gaattt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 asmb: gaaagggttaa (sig=300) RC: ttaaccctttc positions_6nt_m2 asmb: aataatttatattaaaatat (sig=43.16) RC: atattttaatataaattatt positions_6nt_m3 asmb: caggta (sig=28.63) RC: tacctg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 asmb: attttta (sig=66.79) RC: taaaaat oligos_7nt_mkv5_m2 asmb: aacacaa (sig=46.45) RC: ttgtgtt oligos_7nt_mkv5_m3 asmb: ccacgccc (sig=45.98) RC: gggcgtgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	positions_7nt_m1 asmb: aaaagggttaa (sig=300) RC: ttaaccctttt positions_7nt_m2 asmb: aatttaaaatatttta (sig=18.87) RC: taaaatattttaaatt positions_7nt_m3 asmb: tctctctc (sig=15.98) RC: gagagaga	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	twATTAAAtw WATTTAATWA	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twATTAAAtw Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twATTAAAtw ftz MA0225.1 R 7 0.7000 0.921 0.645 wwATTAA... TMATTAA Antp MA0166.1 R 7 0.7000 0.910 0.637 wwATTAA... TMATTAA lab MA0230.1 R 7 0.7000 0.888 0.622 wwATTAA... TMATTAA Total maches= 71 (68 more)		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twATTAAAtw Ubx_FlyReg_FBgn0003944 Ubx_FlyReg_FBgn0003944 D 6 0.6000 0.935 0.561 wwATTA.... cmATTA Hbn_Cell_FBgn0008636 Hbn_Cell_FBgn0008636 R 7 0.7000 0.889 0.622 wwATTAA... TAAWTWA AbdA_Cell_FBgn0000014 AbdA_Cell_FBgn0000014 R 7 0.7000 0.905 0.634 wwATTAA... TMATTAA Total maches= 137 (134 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twATTAAAtw Ubx Ubx D 6 0.6000 0.919 0.551 wwATTA.... mmATTA Dfd Dfd R 7 0.6364 0.929 0.591 wwATTAA... .YMATTAA ftz ftz D 8 0.8000 0.848 0.679 wwATTAAA.. mmATtArm Total maches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twATTAAAtw Ubx Ubx D 7 0.7000 0.929 0.650 wwATTAA... ymATTAA Dfd Dfd R 7 0.6364 0.915 0.582 wwATTAA... .YMATTAA eve eve D 9 0.9000 0.837 0.753 wwATTAAAt. ymATTArma Total maches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 3010 (50.14%) Max nb of predicted sites per peak: 8  (dm3_chr3L_11228523_11231739_+) Mean nb of predicted sites per peak: 1.52	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	wtATGCAAht ADTTGCATAW	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtATGCAAht Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtATGCAAht nub MA0453.1 D 9 0.6923 0.865 0.599 .tATGCAAww TATGyAAAT... vvl MA0254.1 D 6 0.6000 0.869 0.521 .tATGCA... TAtkMA Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtATGCAAht nub_SOLEXA_5_FBgn0085424 nub_SOLEXA_5_FBgn0085424 D 10 0.9091 0.886 0.805 wtATGCAAww wtATGCAAAt. pdm2_SOLEXA_5_FBgn0004394 pdm2_SOLEXA_5_FBgn0004394 D 9 0.7500 0.897 0.673 .tATGCAAww tATGCAAAT.. nub_NAR_FBgn0085424 nub_NAR_FBgn0085424 D 9 0.6923 0.865 0.599 .tATGCAAww TATGyAAAT... Total maches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtATGCAAht Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtATGCAAht nub nub R 10 0.9091 0.911 0.828 wtATGCAAww .WTATGYAART Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 1992 (33.18%) Max nb of predicted sites per peak: 6  (dm3_chr2R_15149446_15151971_+) Mean nb of predicted sites per peak: 1.27	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   positions_6nt_m1	rsrAAAGGGTTAarg CYTTAACCCTTTYSY	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAarg Kr_JASPAR MA0452.1 D 11 0.7333 0.954 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr Kr_FlyReg_FBgn0001325 D 10 0.6667 0.958 0.639 ...AAAGGGTTAA.. AAmGGGTtaw Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAarg Kr MA0452.1 D 11 0.7333 0.954 0.699 .rrAAAGGGTTA... crAAaGGGTTa Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAarg Kr_NAR_FBgn0001325 Kr_NAR_FBgn0001325 D 11 0.7333 0.954 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr_FlyReg_FBgn0001325 Kr_FlyReg_FBgn0001325 D 10 0.6667 0.958 0.639 ...AAAGGGTTAA.. AAmGGGTtaw Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAarg Kr Kr D 10 0.6667 0.967 0.644 ..rAAAGGGTTA... aAAaGGGTta Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsrAAAGGGTTAarg Kr Kr R 11 0.7333 0.969 0.710 .rrAAAGGGTTA... YRAAAGGGTTA Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 1613 (26.87%) Max nb of predicted sites per peak: 6  (dm3_chrX_3912477_3915237_+) Mean nb of predicted sites per peak: 1.23	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   positions_6nt_m2	wwAwwwwwTTwwwwwwwwwTAwwt AWWTAWWWWWWWWWAAWWWWWTWW	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwwt Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwwt Total maches= 0		No match
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwwt Total maches= 0		No match
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwwt Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAwwwwwTTwwwwwwwwwTAwwt Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 2964 (49.38%) Max nb of predicted sites per peak: 23  (dm3_chr3L_12710781_12712005_+) Mean nb of predicted sites per peak: 3.05	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   positions_6nt_m3	rgCAGGTAra TYTACCTGCY	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra sna MA0086.1 D 6 0.6000 0.777 0.466 ..CAGGTA.. CAGGTG Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra vfl_SANGER_5_FBgn0259789 vfl_SANGER_5_FBgn0259789 D 8 0.8000 0.955 0.764 .rCAGGTAr. gCAGGTAG vfl_SOLEXA_5_FBgn0259789 vfl_SOLEXA_5_FBgn0259789 D 10 0.6667 0.948 0.632 wrCAGGTAra ...bkCAGGTAGs.. wor_SOLEXA_2.5_FBgn0001983 wor_SOLEXA_2.5_FBgn0001983 R 8 0.8000 0.780 0.624 .rCAGGTAr. RCAGGTGK Total maches= 10 (7 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra sna sna D 9 0.9000 0.787 0.708 wrCAGGTAr. AdCArGTdr Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgCAGGTAra sna sna R 9 0.9000 0.796 0.716 wrCAGGTAr. ARCAGGTKS Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 2369 (39.46%) Max nb of predicted sites per peak: 6  (dm3_chrX_6890665_6894015_+) Mean nb of predicted sites per peak: 1.49	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv5_m1	dtATTTkTAtt AATAMAAATAH	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dtATTTkTAtt Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dtATTTkTAtt Abd-B MA0165.1 D 6 0.5000 0.871 0.436 .....TkTAtw TTTATk. cad MA0216.1 D 6 0.5000 0.838 0.419 .....TkTAtw TTTATT. hb MA0049.1 R 9 0.7500 0.773 0.580 ..ATTTkTAtw TTTTTTWYK. Total maches= 3		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dtATTTkTAtt Abd-B_FlyReg_FBgn0000015 Abd-B_FlyReg_FBgn0000015 R 7 0.5833 0.870 0.507 ....TTkTAtw TTTTATG. hb_FlyReg_FBgn0001180 hb_FlyReg_FBgn0001180 D 8 0.7273 0.806 0.586 ..ATTTkTAt. tTTTTTrt CG12361_Cell_FBgn0250756 CG12361_Cell_FBgn0250756 D 7 0.5833 0.785 0.458 ....TTkTAtw tTTwATk. Total maches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dtATTTkTAtt zen zen R 6 0.5455 0.807 0.440 .....TkTAtw TTWATT br-Z1 br-Z1 R 8 0.7273 0.807 0.587 ...TTTkTAtw TTWGTATY hb hb R 9 0.8182 0.791 0.648 ..ATTTkTAtw TTTTTTRTK Total maches= 3		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dtATTTkTAtt cad cad D 7 0.5000 0.823 0.412 ....TTkTAtw tTTTATk... Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 3402 (56.67%) Max nb of predicted sites per peak: 8  (dm3_chr3R_19852064_19853359_+) Mean nb of predicted sites per peak: 1.62	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv5_m2	aaAACAyAAaa TTTTRTGTTTT	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAaa Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAaa mirr MA0233.1 D 5 0.4545 0.934 0.424 .aAACA..... wAACA ara MA0210.1 D 5 0.4545 0.930 0.423 .aAACA..... wwACA caup MA0217.1 D 5 0.4545 0.929 0.422 .aAACA..... tAACA Total maches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAaa Mirr_Cell_FBgn0014343 Mirr_Cell_FBgn0014343 D 6 0.4615 0.925 0.427 waAACA..... ..awAACA Mirr_SOLEXA_FBgn0014343 Mirr_SOLEXA_FBgn0014343 D 6 0.5455 0.911 0.497 waAACA..... wwwACA Caup_Cell_FBgn0015919 Caup_Cell_FBgn0015919 D 6 0.4615 0.920 0.425 waAACA..... ..wtAACA Total maches= 11 (8 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAaa Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAyAAaa Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 2929 (48.79%) Max nb of predicted sites per peak: 6  (dm3_chr3L_12719071_12720889_+) Mean nb of predicted sites per peak: 1.47	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv5_m3	ysCCACrCmCmc GKGKGYGTGGSR	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc CG12029_SOLEXA_5_FBgn0035454 CG12029_SOLEXA_5_FBgn0035454 R 12 0.8000 0.895 0.716 wsCCACdCmCmc ..RRCCACACCCAY. CG3065_F1-5_SOLEXA_2.5_FBgn0034946 CG3065_F1-5_SOLEXA_2.5_FBgn0034946 R 12 0.8571 0.850 0.729 wsCCACdCmCmc .RRCCACGCCCMC. CG9895_SANGER_10_FBgn0034810 CG9895_SANGER_10_FBgn0034810 R 11 0.8462 0.881 0.746 .sCCACdCmCmc RCCACRCCCWH. Total maches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCCACrCmCmc Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 2020 (33.65%) Max nb of predicted sites per peak: 5  (dm3_chrX_9025456_9029979_+) Mean nb of predicted sites per peak: 1.33	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   positions_7nt_m1	rvvAAAGGGTTAArs SYTTAACCCTTTBBY	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr_JASPAR MA0452.1 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr Kr_FlyReg_FBgn0001325 D 10 0.6667 0.950 0.633 ...AAAGGGTTAA.. AAmGGGTtaw Total maches= 2		[ match table: html text ] [ alignments (logos): html text ]
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr MA0452.1 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr_NAR_FBgn0001325 Kr_NAR_FBgn0001325 D 11 0.7333 0.953 0.699 .rrAAAGGGTTA... crAAaGGGTTa Kr_FlyReg_FBgn0001325 Kr_FlyReg_FBgn0001325 D 10 0.6667 0.950 0.633 ...AAAGGGTTAA.. AAmGGGTtaw Ptx1_SOLEXA_FBgn0020912 Ptx1_SOLEXA_FBgn0020912 R 8 0.5333 0.750 0.400 ......GGGTTAAr. GGATTARC Total maches= 3		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr Kr D 10 0.6667 0.966 0.644 ..rAAAGGGTTA... aAAaGGGTta Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvvAAAGGGTTAArs Kr Kr R 11 0.7333 0.966 0.708 .rrAAAGGGTTA... YRAAAGGGTTA Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 1512 (25.19%) Max nb of predicted sites per peak: 5  (dm3_chr3R_4524567_4529329_+) Mean nb of predicted sites per peak: 1.22	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   positions_7nt_m2	wwaATwwwwwwwwTwTwaww WWTWAWAWWWWWWWWATTWW	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww Total maches= 0		No match
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaATwwwwwwwwTwTwaww bab1 bab1 R 14 0.7000 0.766 0.536 wwAATwwwwwwwwT...... AYWATWATAWATAT Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 2681 (44.66%) Max nb of predicted sites per peak: 13  (dm3_chrX_9650934_9651943_+) Mean nb of predicted sites per peak: 2.36	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   positions_7nt_m3	yckCTCkCkCtc GAGMGMGAGMGR	[ matrix: tab format transfac format ]
Reference motifs name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Total maches= 0		No match
jaspar_core_insects name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Trl MA0205.1 D 10 0.8333 0.893 0.744 yckCTCkCKC.. yykCTCTCty Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
FlyFactorSurvey name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Trl_FlyReg_FBgn0013263 Trl_FlyReg_FBgn0013263 D 10 0.8333 0.893 0.744 yckCTCkCKC.. yykCTCTCty Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Trl Trl D 12 0.9231 0.820 0.757 yckCTCkCKCtc TtkykCTCtCtc. Total maches= 1		[ match table: html text ] [ alignments (logos): html text ]
IDMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yckCTCkCkCtc Total maches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peaks Nb peaks with predicted sites: 1907 (31.77%) Max nb of predicted sites per peak: 19  (dm3_chr2R_13603197_13605856_+) Mean nb of predicted sites per peak: 2.57	[ view in genome browser : ] [ sites: text BED (UCSC track) ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Kr_D.mel_1-3h_Markov_m=k-2 -i $RSAT/tmp/peak-motifs.2011_12_08.110750/peak-motifspeak_seq.masked -minol 6 -maxol 7 -2str -disco oligos,positions -max_seq_len 2000 -motif_db jaspar_core_insects tf $RSAT/public_html/data/motif_databases/JASPAR/jaspar_core_insects_2009_10.tf -motif_db FlyFactorSurvey tf $RSAT/public_html/data/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey.tf -motif_db DMMPMM_drosophila tf $RSAT/public_html/data/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -motif_db IDMMPMM_drosophila tf $RSAT/public_html/data/motif_databases/DMMPMM_drosophila/idmmpmm_PCM.tf -ref_motifs /home/rsat/rsa-tools/public_html/tmp/peak-motifs.2011_12_08.110750/peak-motifs_ref_motifs.tf -source galaxy -task synthesis,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/peak-motifs.2011_12_08.110750