Index of /rsat/demo_files

[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[ ]yeast_string_database_graph_converted_weights.tab13-Nov-2013 11:52 304K 
[ ]varscan_weirauch-snps_vs_JASPAR_pval0.001_pvalratio10.tab25-Mar-2015 23:32 10K 
[TXT]variation_testfile.vcf09-Apr-2017 20:20 3.5K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs_TFs_relfreq.tf23-Feb-2015 11:49 92K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs_TFs.tf23-Feb-2015 11:49 68K 
[TXT]variation_demo_set_MWeirauch_cell_2014_15SNPs_IDs.txt25-Jan-2015 23:47 151  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.varseq18-Feb-2016 01:20 3.3K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.varBed24-Jan-2018 10:24 935  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.rsat-var20-Jan-2015 03:25 935  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.gvf20-Jan-2015 03:25 3.4K 
[ ]variation_demo_set_MWeirauch_cell_2013_15SNPs_TFs.tf20-Jan-2015 03:25 93K 
[TXT]variation_demo_set.vcf28-Oct-2014 17:30 1.5K 
[ ]variation_demo_set.varseq27-Jul-2016 20:51 3.9K 
[ ]variation_demo_set.rsat-var14-Jan-2015 15:41 757  
[ ]variation-scan_results_WeireauchSNPs_vs_jaspar_core_vertebrates.tab08-Aug-2017 11:26 10K 
[TXT]test_yeast.bed23-Jan-2018 10:36 306  
[ ]test.tab08-Aug-2017 11:26 132K 
[ ]string_yeast_gene_coexpression_names_gt_550.tab13-Nov-2013 11:52 83K 
[ ]string_coexpression_top_edges.gml13-Nov-2013 11:52 681K 
[ ]string_coexpression_mcl_clusters.tab13-Nov-2013 11:52 227K 
[ ]seq_mm9_galaxy_matrix-scan.ft13-Nov-2013 11:52 347  
[TXT]seq_mm9_galaxy.bed13-Nov-2013 11:52 592  
[ ]roc-stats_demo_regulonDB_cg_stringcoex_inter-Q.tab13-Nov-2013 11:52 138K 
[ ]rdm_test.tab13-Nov-2013 11:52 6.9K 
[DIR]protein_interactions/05-Feb-2020 14:39 -  
[TXT]profiles_Insect_motifs_sequences.fasta26-Feb-2016 17:42 4.4M 
[ ]profiles_Insect_motifs_matrices.tf26-Feb-2016 17:40 42K 
[ ]peak-motifs_result_Chen_Oct4_permuted_matrices.tf29-Jan-2015 19:52 23K 
[ ]peak-motifs_result_Chen_Oct4_matrices.tf25-Apr-2014 00:32 12K 
[ ]peak-motifs_Sox2_vs_Oct4_matrices.tf22-Apr-2015 16:09 11K 
[ ]peak-motifs_Sox2_matrices.tf22-Apr-2015 16:09 17K 
[TXT]peak-motifs_Oct4_metric_ranges.txt09-Jul-2015 21:11 48  
[ ]peak-motifs_Oct4_matrices.tf07-Jun-2014 07:42 23K 
[ ]peak-motifs_GSM559652_heart_p300_3597peaks.fa13-Nov-2013 11:52 2.5M 
[ ]peak-motifs_GSM559652_heart_p300_1000peaks.fa13-Nov-2013 11:52 840K 
[ ]peak-motifs_GSM348066_limb_p300_2105peaks.fa13-Nov-2013 11:52 1.5M 
[ ]peak-motifs_GSM348066_limb_p300_1000peaks.fa13-Nov-2013 11:52 706K 
[ ]oligo_analysis_demo_seq.fa08-Aug-2017 11:26 12K 
[ ]mips_complexes.tab13-Nov-2013 11:52 47K 
[ ]merged_Homer_MEME-ChIP_peak-motifs_Oct4_matrices.tf17-Jul-2016 10:55 51K 
[ ]mcode.mde13-Nov-2013 11:52 680  
[ ]matrix_quality_demo_seq2.fa08-Aug-2017 11:26 9.6K 
[ ]matrix_quality_demo_seq1.fa08-Aug-2017 11:26 8.0K 
[ ]matrix_quality_demo_matrix.tf08-Aug-2017 11:26 17K 
[ ]matrix-scan-quick_demo_seq.fa08-Aug-2017 11:26 5.5K 
[ ]matrix-scan-quick_demo_matrix.tf08-Aug-2017 11:26 885  
[ ]matrix-clustering_demo_peak-motifs_result.tf10-May-2014 06:55 12K 
[ ]matrix-clustering_demo_peak-motifs_pairwise_compa.tab09-Apr-2014 11:51 20K 
[ ]matrix-clustering_demo_peak-motifs_matrix_descriptions.tab09-Apr-2014 11:51 2.8K 
[DIR]matrices_from_kmers/12-Mar-2020 04:55 -  
[ ]local-word-analysis_demo_seq.fa08-Aug-2017 11:26 12K 
[ ]krogan_2006_mcl_vs_mips_table.tab13-Nov-2013 11:52 944K 
[ ]jaspar_stat5ab_matrix.tf09-Sep-2014 14:00 1.1K 
[TXT]isRSNP_result.csv29-May-2015 01:54 1.8K 
[ ]info-gibbs_demo_seq.fa08-Aug-2017 11:26 4.4K 
[ ]gavin_mcl_clusters_inf2.1_cc_mips_complexes_matrix.tab13-Nov-2013 11:52 119K 
[ ]gavin_mcl_clusters_inf2.1.tab13-Nov-2013 11:52 27K 
[ ]footprint-discovery_selected_yeast_genes.tab05-Mar-2015 11:06 262  
[ ]footprint-discovery_LexA_matrices.tf13-Apr-2014 10:31 61K 
[TXT]fetch-sequences_Schmidt_2011_mm9_CEBPA_SWEMBL_R0.12_702peaks.bed13-Nov-2013 11:52 47K 
[ ]feature-map_demo_data.ft08-Aug-2017 11:26 11K 
[ ]dyad_analysis_demo_seq.fa08-Aug-2017 11:26 5.1K 
[ ]drosophila_eve_segmentation_sites.ft10-Apr-2014 15:00 5.3K 
[ ]do798+do735_mmus_hnf6_liver.transfac09-Sep-2014 14:00 17K 
[ ]dna-pattern_demo_seq.fa08-Aug-2017 11:26 4.2K 
[ ]cytomod_matrices.meme20-Aug-2017 11:26 6.0K 
[TXT]convert-matrix_demo_data.txt13-Nov-2013 11:52 1.0K 
[IMG]convert-features_demo.pat08-Aug-2017 11:26 1.4K 
[ ]compare-matrices_demo.tf13-Nov-2013 11:52 5.1K 
[ ]brachypodium_diastichon_branched_aa_pathway_GO-0009081_genes.tab08-Aug-2017 11:26 4.1K 
[ ]allup500_Saccharomyces_cerevisiae_some_pattern_counts.tab08-Aug-2017 11:26 132K 
[ ]all_human_ENCODE_DNAse_mk1_bg.ol09-Sep-2014 14:00 2.3K 
[ ]XYgraph_demo_data.ft08-Aug-2017 11:26 1.9K 
[TXT]Sox2_peaks.fasta27-Apr-2016 20:59 3.9M 
[ ]Scer_biocyc.tab13-Nov-2013 11:52 74K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof_200bp.fasta.gz13-Nov-2013 11:52 250K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof.fasta.gz13-Nov-2013 11:52 309K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof.bed.gz13-Nov-2013 11:52 87K 
[TXT]SWEMBL_mmus_CEBPA_vs_mmus_Input_peaks_R0.12_nof.bed13-Nov-2013 11:52 47K 
[TXT]SVM_heart_CC_CRM_3cols.40.bed20-Feb-2015 14:11 891  
[TXT]SVM_dmel_all_intergenic_and_introns_promoters_500bp_r5.57.bed20-Feb-2015 14:11 4.4M 
[TXT]SVM_dm3ChromInfo.txt20-Feb-2015 14:11 228  
[TXT]SVM_background_CRM_13-16.bed20-Feb-2015 14:12 17K 
[ ]SVM_259_matrices_small.tf20-Feb-2015 14:12 4.4K 
[ ]SVM_2nt_intergenic_Drosophila_melanogaster.freq20-Feb-2015 14:11 323  
[ ]RSAT_peak-motifs_Oct4_matrices.tf10-Jan-2016 07:39 19K 
[ ]Prunus_persica.Prunus_persica_NCBIv2.38_upstream.chr1.fasta.gz06-Jan-2019 23:27 5.9M 
[ ]Ppersica_Varieties.chr1.vcf.gz06-Jan-2019 23:27 60M 
[TXT]PHO_up800-noorf.fasta13-Nov-2013 11:52 15K 
[ ]Oct4_vs_Sox2_motif_set.tab28-Apr-2015 13:24 268  
[TXT]Oct4_peaks.fasta27-Apr-2016 20:59 4.2M 
[TXT]Nanog_peaks.fasta27-Apr-2016 20:59 4.1M 
[TXT]Nakamura_GSM1368207_gamma8_mm10_ICN1_peaks.bed31-Mar-2018 19:10 265K 
[ ]Mycoplasma_genitalium_upstream_-30_+29.fasta.gz13-Nov-2013 11:52 13K 
[ ]Multi_algorithms_analysis_motif_set.tab08-Aug-2017 11:26 1.1K 
[TXT]MET_up800-noorf_purged.fasta08-Aug-2017 11:26 13K 
[TXT]MET_up800-noorf_purge_log.txt08-Aug-2017 11:26 245  
[ ]MET_up800-noorf_purge_benchmark.json08-Aug-2017 11:26 150  
[TXT]MET_up800-noorf.fasta13-Nov-2013 11:52 13K 
[ ]MEME_ChIP_Oct4_matrices.tf10-Jan-2016 07:39 19K 
[ ]LexA.2nt_upstream-noorf-ovlp-2str.20.tf13-Nov-2013 11:52 2.9K 
[ ]LexA.2nt_upstream-noorf-ovlp-2str.20.meme13-Nov-2013 11:52 19K 
[ ]Jun_Chip_seq_sequences.fasta.zip19-Apr-2016 11:11 256K 
[TXT]Jun_Chip_seq_sequences.fasta27-Feb-2016 19:33 824K 
[TXT]ID_links_demo.txt19-Apr-2016 18:15 1.0K 
[ ]Homer_l13_mis3_hyper_Oct4_matrices.tf24-Sep-2015 11:47 13K 
[ ]HOCOMOCO_Human_Ncor0.8_cor0.85_JUND_Demo.tf16-Mar-2016 02:43 31K 
[ ]Ecoli_metabolic_network.tab13-Nov-2013 11:52 220K 
[ ]Drosophila_melanogaster_eve_segmentation_sites_pval0.001_nocomments.ft09-Feb-2015 13:21 2.3K 
[ ]Drosophila_melanogaster_eve_segmentation_sites_pval0.001.ft18-Apr-2014 16:46 5.3K 
[ ]Drosophila_melanogaster_all_upstream3000-noorf_Dorsal_mkv2_pval0.001_sites.ft18-Mar-2015 17:14 5.5M 
[ ]Dmelanogaster_segmentation_12matrices.tf11-Oct-2014 06:22 3.5K 
[TXT]Dmelanogaster_eve_up5000.fasta11-Oct-2014 06:22 5.6K 
[DIR]ChIP-seq_peaks/05-Feb-2020 14:39 -  
[ ]Capstarr_selected_TFs.tf18-Feb-2016 01:15 8.1K 
[TXT]CapStarrseq_InactiveProm_FDR95_All_samples.fasta18-Feb-2016 01:16 3.4M 
[TXT]CapStarrseq_Active_Prom_K562_merge_IP.fasta18-Feb-2016 01:15 175K 
[TXT]CapStarrseq_Active_Prom_HELA_merge_IP.fasta18-Feb-2016 01:15 136K 
[TXT]Blow_2010_GSM559653_midbrain_p300_peaks.bed08-Aug-2017 11:26 91K 
[TXT]Blow_2010_GSM348064_forebrain_p300_peaks.bed12-Dec-2013 19:48 91K 
[ ]Ballester_etal_elife_2014_module_beyondprimates_conserved_hg18_lift_to_hg19.varbed27-Nov-2017 19:07 572K 
[TXT]Ballester_etal_elife_2014_module_beyondprimates_conserved_hg18_lift_to_hg19.bed27-Nov-2017 19:07 38K 
[ ]Ballester_etal_elife_2014_hg18_hnf6_singletons.fa27-Nov-2017 19:07 4.0M 
[ ]Ballester_etal_elife_2014_hg18_hnf4a_singletons.fa27-Nov-2017 19:07 4.2M 
[ ]Ballester_etal_elife_2014_hg18_foxa1_singletons.fa27-Nov-2017 19:07 2.5M 
[ ]Ballester_etal_elife_2014_hg18_cebpa_singletons.fa27-Nov-2017 19:07 2.5M 
[ ]Ballester_etal_elife_2014_4TFs_motifs.tf07-Mar-2018 04:24 67K 
[ ]Arabidopsis_thaliana_methionine_genes_go-0009086.tab08-Aug-2017 11:26 7.5K 
[TXT]Arabidopsis_thaliana_GSM1482283_MYB3R3-GFP_ChIP_peaks.bed11-Nov-2015 04:16 113K 
[ ]All_hpromoterRegions_BG_model_mkv_2.oligos18-Feb-2016 01:15 2.0K