/data/rsat/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf
		file1	1	11	1196
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m4 MA0785.1 oligos_6nt_mkv3_m4 POU2F1 0.824 0.755 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_6nt_mkv3_m4 MA0025.2 oligos_6nt_mkv3_m4 NFIL3 0.863 0.730 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_6nt_mkv3_m4 MA0843.1 oligos_6nt_mkv3_m4 TEF 0.781 0.716 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_6nt_mkv3_m4 MA0639.1 oligos_6nt_mkv3_m4 DBP 0.761 0.698 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_6nt_mkv3_m4 MA0627.2 oligos_6nt_mkv3_m4 POU2F3 0.816 0.691 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_6nt_mkv3_m4 MA0792.1 oligos_6nt_mkv3_m4 POU5F1B 0.835 0.683 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv3_m4 MA1115.1 oligos_6nt_mkv3_m4 POU5F1 0.807 0.673 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_6nt_mkv3_m4 MA0789.1 oligos_6nt_mkv3_m4 POU3F4 0.811 0.663 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv3_m4 MA1607.1 oligos_6nt_mkv3_m4 Foxl2 0.831 0.653 11 14 11 14 0.7857 1.0000 0.7857 R -3
oligos_6nt_mkv3_m4 MA0788.1 oligos_6nt_mkv3_m4 POU3F3 0.771 0.652 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_6nt_mkv3_m4 MA0847.2 oligos_6nt_mkv3_m4 FOXD2 0.768 0.650 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_6nt_mkv3_m4 MA0043.3 oligos_6nt_mkv3_m4 HLF 0.825 0.648 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_6nt_mkv3_m4 MA0786.1 oligos_6nt_mkv3_m4 POU3F1 0.826 0.635 11 12 10 13 0.7692 0.9091 0.8333 R -2
oligos_6nt_mkv3_m4 MA0784.1 oligos_6nt_mkv3_m4 POU1F1 0.791 0.622 11 14 11 14 0.7857 1.0000 0.7857 R -3
oligos_6nt_mkv3_m4 MA0787.1 oligos_6nt_mkv3_m4 POU3F2 0.803 0.618 11 12 10 13 0.7692 0.9091 0.8333 R -2
oligos_6nt_mkv3_m4 MA0845.1 oligos_6nt_mkv3_m4 FOXB1 0.871 0.603 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv3_m4 MA0032.2 oligos_6nt_mkv3_m4 FOXC1 0.827 0.573 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv3_m4 MA0507.1 oligos_6nt_mkv3_m4 POU2F2 0.793 0.566 11 13 10 14 0.7143 0.9091 0.7692 D -3
oligos_6nt_mkv3_m4 MA0142.1 oligos_6nt_mkv3_m4 Pou5f1::Sox2 0.768 0.563 11 15 11 15 0.7333 1.0000 0.7333 R 0
oligos_6nt_mkv3_m4 MA0846.1 oligos_6nt_mkv3_m4 FOXC2 0.765 0.491 11 12 9 14 0.6429 0.8182 0.7500 R -3
oligos_6nt_mkv3_m4 MA0607.1 oligos_6nt_mkv3_m4 Bhlha15 0.793 0.462 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_6nt_mkv3_m4 MA0047.3 oligos_6nt_mkv3_m4 FOXA2 0.804 0.459 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv3_m4 MA1683.1 oligos_6nt_mkv3_m4 FOXA3 0.771 0.440 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv3_m4 MA0042.2 oligos_6nt_mkv3_m4 FOXI1 0.872 0.436 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0481.3 oligos_6nt_mkv3_m4 FOXP1 0.758 0.433 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv3_m4 MA1103.2 oligos_6nt_mkv3_m4 FOXK2 0.756 0.432 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv3_m4 MA0850.1 oligos_6nt_mkv3_m4 FOXP3 0.854 0.427 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA1606.1 oligos_6nt_mkv3_m4 Foxf1 0.732 0.418 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv3_m4 MA0593.1 oligos_6nt_mkv3_m4 FOXP2 0.731 0.418 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv3_m4 MA0848.1 oligos_6nt_mkv3_m4 FOXO4 0.834 0.417 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0148.4 oligos_6nt_mkv3_m4 FOXA1 0.779 0.416 11 12 8 15 0.5333 0.7273 0.6667 R -4
oligos_6nt_mkv3_m4 MA0849.1 oligos_6nt_mkv3_m4 FOXO6 0.828 0.414 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0033.2 oligos_6nt_mkv3_m4 FOXL1 0.817 0.408 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0031.1 oligos_6nt_mkv3_m4 FOXD1 0.868 0.400 11 8 6 13 0.4615 0.5455 0.7500 R -2 
 Host name	pedagogix
 Job started	2021-02-16.145134
 Job done	2021-02-16.145321
 Seconds	16.11
	user	16.11
	system	2.78
	cuser	84.63
;	csystem	3.66